Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01159 and RBAM_007220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:52
# Commandline: needle
# -asequence dna-align/BSNT_01159.1.9828.seq
# -bsequence dna-align/RBAM_007220___yeeF1.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01159-RBAM_007220___yeeF1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01159-RBAM_007220___yeeF1.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01159
# 2: RBAM_007220___yeeF1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2063
# Identity: 1635/2063 (79.3%)
# Similarity: 1635/2063 (79.3%)
# Gaps: 112/2063 ( 5.4%)
# Score: 6560.5
#
#
#=======================================
BSNT_01159 1 ATGAAAGTATTTGAAGCGAAAACACTACTTTCAGAAGCGGCAGACCGTGC 50
||||||||.||.|||||.|..||.||.|| |||.|.| ||
RBAM_007220__ 1 ATGAAAGTTTTCGAAGCAACCACCCTGCT---------GGCCGCC---GC 38
BSNT_01159 51 AAAA------------GAGTACAAAGAACTAAGAACG--CAAATGGTCAA 86
.||| ||.||||||||||| |..|| ||.||||||||
RBAM_007220__ 39 CAAACAGCGCGCGGGTGAATACAAAGAACT--GCGCGGCCAGATGGTCAA 86
BSNT_01159 87 CTTGAGAAAAGCGTTAAAAAGCGTCGCTGATCTCAGTGACAGTGAATTCT 136
|||||.|||||||||..||.|..|.|||||||||.||||||.|||.||||
RBAM_007220__ 87 CTTGAAAAAAGCGTTTCAAGGTATGGCTGATCTCGGTGACAATGATTTCT 136
BSNT_01159 137 CAGGTAAAGGCGCTAGCAATATCAAAGCCTTCTACCACGACCACGTCGGC 186
||||....|||||.|..||.|||||||||||.|.|||.|||||||.||||
RBAM_007220__ 137 CAGGCCGGGGCGCAAATAACATCAAAGCCTTTTTCCAAGACCACGCCGGC 186
BSNT_01159 187 GTCACCGACCAATGGATCGA-CTACATCGACATGAAAATCGCATTTTTCA 235
|||||.|||...|||.|.|| || .|||||||||||||||||||||.|||
RBAM_007220__ 187 GTCACAGACAGCTGGCTTGATCT-GATCGACATGAAAATCGCATTTCTCA 235
BSNT_01159 236 ACAGTATCGCCGG--AGCCGCCGAAGACAAAGGCCTCTC--AGACGCATA 281
..||..|..|||| || |.||||||....||.||.|| |..|||||
RBAM_007220__ 236 CAAGCCTTCCCGGTAAG--GTCGAAGATGCCGGACTTTCCAATTCGCAT- 282
BSNT_01159 282 CATCGAAGAATCCTTCCTGGAGCACGAACTGGCAAATGCCAATAAAAAAT 331
.|.||.|||||.||.||||||||.||.||..|..|.|||...|..||||
RBAM_007220__ 283 -GTGGAGGAATCATTTCTGGAGCATGAGCTCACCCACGCCCTCAGTAAAT 331
BSNT_01159 332 CAAAATCCATCATGTCCGAACAGAAAAAAGCGATGAAAGACATCCT--GA 379
||||....||.|||...||.||||||||.|..|||.....|||||| ||
RBAM_007220__ 332 CAAAGGTGATTATGGAAGAGCAGAAAAAGGACATGCGCTCCATCCTCGGA 381
BSNT_01159 380 ACGATATCGACGACATCCTCCCGCTCGACCTGTTTTCAACAGAAACCTTC 429
||.|||||.||||||.||.|||||||.||.|||||.||.||||.|.|.
RBAM_007220__ 382 --GAGATCGATGACATCATCTCGCTCGATCTCTTTTCCACCGAAAGCGTG 429
BSNT_01159 430 AAAGACGAGCTGGCCGAT--GCC-----AACGACAAACGCAAAAAAACAC 472
.|..||.|||| ||.|| ||| ||.||.||||| ||||..
RBAM_007220__ 430 GATCACAAGCT--CCAATCAGCCGACAAAAAGAGAAACG-----AAACGA 472
BSNT_01159 473 TGGATAAA-TTGGACGCCTTGGACGAAGACCTGAAAACAGAATACGC--- 518
|..||||| |.||..|.||| ||..|.||.||.|..|.|||||||||
RBAM_007220__ 473 TACATAAACTCGGCAGACTT-GATCACGATCTAACGAAAGAATACGCAGA 521
BSNT_01159 519 --CCTGTCAGAACCAAACGAACAATTCATCAAATCCGACTTCCAAAAGCT 566
|| |||.|.||||||||.||||||.||.|||||||..|..||||
RBAM_007220__ 522 AACC-----GAAGCGAACGAACAGTTCATCCAAGCCGACTTTGAGCAGCT 566
BSNT_01159 567 CCAAGAAGCAACTGGCAAAGGCAAAAACGCTACGCCCATCCACTACAACG 616
||||.|..|.||.||||||||.|||..|||.|||||..|.||||||||.|
RBAM_007220__ 567 CCAAAACACTACGGGCAAAGGAAAAGGCGCCACGCCGCTTCACTACAATG 616
BSNT_01159 617 CCAAGGCGTACCGTGACAGTGACATACATAAGAAAAAAGGCGACATTGAA 666
|||||||||||||.||.||.|||||.||||||||.||||||||.||||.|
RBAM_007220__ 617 CCAAGGCGTACCGAGAAAGCGACATCCATAAGAAGAAAGGCGAGATTGCA 666
BSNT_01159 667 AAGCGGA----CTGAGGCTTACTTGAAGATTAAGACAGAGGAAGCGAAGA 712
| || |.||.|||||.||||||||.||||.||||||||||||..
RBAM_007220__ 667 A----GACATTCGGATGCTTATTTGAAGATGAAGAAAGAGGAAGCGAAAG 712
BSNT_01159 713 AACGCGAGATTGAAAAACTGAAAGAAAGACTGAAAAACTACGATTATGCG 762
||||.|||||||||||||||||||||||||||||||||||||||||||||
RBAM_007220__ 713 AACGAGAGATTGAAAAACTGAAAGAAAGACTGAAAAACTACGATTATGCG 762
BSNT_01159 763 GATGCCGATGAATTTTACTCAATGGCAAAAACGATCGGCTATGAAAATCT 812
.||||.||||||||.||.||||||||.|||||||||||||||.||||.||
RBAM_007220__ 763 AATGCTGATGAATTCTATTCAATGGCCAAAACGATCGGCTATAAAAACCT 812
BSNT_01159 813 AACAGCAGAACAACAGAGATACTTCACCCAAATCGAAAACACGCGTGAAC 862
.|||..||||||.|||.|.||||||||.|||||.|||||||.||||||||
RBAM_007220__ 813 GACAAAAGAACAGCAGCGCTACTTCACTCAAATTGAAAACAAGCGTGAAC 862
BSNT_01159 863 TTGAAGCAGGCTTCAAAGGGGTTGCCGTCGGCCTTTATGATTCCGGGAAA 912
||..||..||.||||||||.||||||||||||||||||||||||||.|||
RBAM_007220__ 863 TTACAGATGGTTTCAAAGGCGTTGCCGTCGGCCTTTATGATTCCGGAAAA 912
BSNT_01159 913 GACGCGGTCGTAGGCCTGTGGGATATGGTCACAGATCCGGGCGGAACCGT 962
|||||||||..||||||||||||||||||||||||||||||||||||.||
RBAM_007220__ 913 GACGCGGTCACAGGCCTGTGGGATATGGTCACAGATCCGGGCGGAACGGT 962
BSNT_01159 963 TGAAGCCATTACAGGAGCGATGGCTCACCCGATCAAAACGTATGAAGCCA 1012
|||||||||||||||.|||.||||||||||||||||||||||||||||||
RBAM_007220__ 963 TGAAGCCATTACAGGTGCGGTGGCTCACCCGATCAAAACGTATGAAGCCA 1012
BSNT_01159 1013 TTTCAGCGGCAATCGAAGAATCATACCAAAAAGACATGGTGAATGGCGAC 1062
||||||||||||||||||||||.|||||||||||||||||||||||||||
RBAM_007220__ 1013 TTTCAGCGGCAATCGAAGAATCGTACCAAAAAGACATGGTGAATGGCGAC 1062
BSNT_01159 1063 ACCTACTCAAGAGCAAGATGGGTGTCATATGCGGTTGGCACTGTTGTCAC 1112
||||||||.|||||||||||||||||||||||.||.|||||.|||||.||
RBAM_007220__ 1063 ACCTACTCCAGAGCAAGATGGGTGTCATATGCAGTAGGCACCGTTGTGAC 1112
BSNT_01159 1113 ATCAATTGTCGGCACAAAAGGTGTAGGAGCCGTCTCTAAAACAGGCACAG 1162
||||.|.||||||||||||||.||.||.||||||||.|||||.|||||||
RBAM_007220__ 1113 ATCAGTCGTCGGCACAAAAGGCGTCGGCGCCGTCTCAAAAACTGGCACAG 1162
BSNT_01159 1163 CTGCCAAAGTGACGGCCAAAGTCAAAACAGCAGCAAACAAATCAGCAACA 1212
|.|||||||||||..|||||||||||||||||||||.||||||.||.|||
RBAM_007220__ 1163 CCGCCAAAGTGACAACCAAAGTCAAAACAGCAGCAAGCAAATCCGCCACA 1212
BSNT_01159 1213 GCCCAAAAAGCCATAATGGTCTCAAAACAAACCGTTGATCACATCAAACA 1262
||.||||||||.||||..||||||||||||||||||||.||||||||.||
RBAM_007220__ 1213 GCTCAAAAAGCGATAACAGTCTCAAAACAAACCGTTGACCACATCAAGCA 1262
BSNT_01159 1263 AAAAGTAAACACAGGCATTGAAGTATCAAAAAAACACGTCAAAACCAGGT 1312
|||.||.|||||||||||.||||||||||||||||.|||||||||||.||
RBAM_007220__ 1263 AAAGGTCAACACAGGCATGGAAGTATCAAAAAAACGCGTCAAAACCAAGT 1312
BSNT_01159 1313 TAAATCAAATCGGAGATCTCACTCTAGCTGATATTCTCCCGTATCATCCG 1362
|.||||||||||||.|||||||||||||||||||||||||||||||||||
RBAM_007220__ 1313 TGAATCAAATCGGAAATCTCACTCTAGCTGATATTCTCCCGTATCATCCG 1362
BSNT_01159 1363 CGTCACGACTTAGTGCCGGCGGGCGTTCCTTACAACGCGGTCAACGGGGT 1412
||||||||||||||||||||||||||.||||||||.||.||||.||||||
RBAM_007220__ 1363 CGTCACGACTTAGTGCCGGCGGGCGTGCCTTACAATGCTGTCAGCGGGGT 1412
BSNT_01159 1413 CACACTTAAAGAGGGACTGCAAAAATTCGCCAAGGTCATTCTTCCGAAAC 1462
||||||||||||.|||||.||.|||||||||||||||||.||.|||||||
RBAM_007220__ 1413 CACACTTAAAGAAGGACTTCAGAAATTCGCCAAGGTCATCCTGCCGAAAC 1462
BSNT_01159 1463 CATACGGAACGTCATCAAGCGGAAGACGAACTCCAGCGCCACATGTACCG 1512
|.||||||||.||..|||||||.|||||.||.||.||.||.|||||.|||
RBAM_007220__ 1463 CGTACGGAACTTCTGCAAGCGGCAGACGGACACCGGCACCGCATGTCCCG 1512
BSNT_01159 1513 CCGGTAACCGTCAAATACGGCGAGCATTTCGCAAGATGGAGCAGAAAGAA 1562
||||||||.||||||||||||||||||||.||.|.|||||.|||||||||
RBAM_007220__ 1513 CCGGTAACGGTCAAATACGGCGAGCATTTTGCGAAATGGACCAGAAAGAA 1562
BSNT_01159 1563 AGTACTGAAGCCGAATGTTATCTACAAAACAAAAGAAGGCTACACATACA 1612
||||.|||||||||||||.|||||||||||||||||||||||||||||||
RBAM_007220__ 1563 AGTATTGAAGCCGAATGTCATCTACAAAACAAAAGAAGGCTACACATACA 1612
BSNT_01159 1613 CGACTGACAACTATGGTAGAATTACAAGTGTCAAAGCAGACTTGCAGCTG 1662
|.||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_007220__ 1613 CTACTGACAACTATGGTAGAATTACAAGTGTCAAAGCAGACTTGCAGCTG 1662
BSNT_01159 1663 GGAGAAGCAAAACGAAACCAATATGCACAGACGAATGCTGGAAAGCCCCA 1712
||||||||||||||.|||||||||||.|||.|.||.||.||.||.||
RBAM_007220__ 1663 GGAGAAGCAAAACGCAACCAATATGCGCAGTCTAAAGCAGGTAAACC--- 1709
BSNT_01159 1713 AGACCGAAAGCCCGACGATGACGGCGGCCATTTAATCGCCACCCAATTCA 1762
||||||...|.|.||.||.|||||.|||||..|||||||.||.|||||||
RBAM_007220__ 1710 AGACCGTCTGACAGATGACGACGGAGGCCACCTAATCGCTACTCAATTCA 1759
BSNT_01159 1763 AAGGCTCAGGCCAGTTCGACAATATCGTGCCGATGAATTCTCAGATTAAT 1812
|.||||||||||||||||||||.|||||||||||||||||||||||||||
RBAM_007220__ 1760 AGGGCTCAGGCCAGTTCGACAACATCGTGCCGATGAATTCTCAGATTAAT 1809
BSNT_01159 1813 AGGAGTGGCGGGAAATGGTACAACATGGAGCAAGTGTGGTCTAAAG---C 1859
|||||.|||||...||||||..|.||||||||||..|||.| |||| |
RBAM_007220__ 1810 AGGAGCGGCGGCCGATGGTATGAAATGGAGCAAGAATGGGC-AAAGGCTC 1858
BSNT_01159 1860 TTTAAGTCAAAAACCACCGAAACAGGTGACAGTTAAAATTAACA------ 1903
||.||| ||.|||||||.||| |.||||||..||||||
RBAM_007220__ 1859 TTAAAG--AAGAACCACCTAAA------AGAGTTAATGTTAACATAGAAT 1900
BSNT_01159 1904 ACATTTATGAGGGTGATTCTTTAAGACCTTCTAAATTTATTGTTGTATAT 1953
..||.|||.|.|||||.||||||||||||.|.|||||.||..|.|.||||
RBAM_007220__ 1901 CTATATATAAAGGTGACTCTTTAAGACCTACAAAATTCATAATCGAATAT 1950
BSNT_01159 1954 AAAGTTGGGGATAAAGAACCTGTTAGAACAATC------ATTAAGAATAA 1997
|...||||..||||| |.||.|.|| ||.||.||..|
RBAM_007220__ 1951 ACGATTGGCAATAAA---------ACAAAATTCGTGACAATAAAAAACCA 1991
BSNT_01159 1998 AGCTGGGGGTTAA 2010
||||||.||||||
RBAM_007220__ 1992 AGCTGGAGGTTAA 2004
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