Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01150 and RBAM_007110
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Amino acid alignment /
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:51
# Commandline: needle
# -asequence dna-align/BSNT_01150___yerP.1.9828.seq
# -bsequence dna-align/RBAM_007110___swrC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01150___yerP-RBAM_007110___swrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01150___yerP-RBAM_007110___swrC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01150___yerP
# 2: RBAM_007110___swrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3200
# Identity: 2538/3200 (79.3%)
# Similarity: 2538/3200 (79.3%)
# Gaps: 97/3200 ( 3.0%)
# Score: 10030.0
#
#
#=======================================
BSNT_01150___ 1 ATGAATCACGTTATTAATTTCGTTCTGAAAAACAAATTCGCCGTATGGCT 50
|||||.|||.|||||||.||.||.|||||.|||||||||||.||.|||||
RBAM_007110__ 1 ATGAACCACATTATTAACTTTGTACTGAAGAACAAATTCGCAGTTTGGCT 50
BSNT_01150___ 51 GATGACGATTATTGTAACGGCAGCCGGCTTGTATGCGGGTATGAATATGA 100
||||||||||||.||.||.|.|||.||..|||||||.|||||||||||||
RBAM_007110__ 51 GATGACGATTATCGTTACTGTAGCAGGGCTGTATGCCGGTATGAATATGA 100
BSNT_01150___ 101 AGCAAGAGTCTATTCCTGACGTGAACATGCCTTA-CTTGACGATCAG--- 146
||||.||.||.||.||.|||||.||||||||||| ||| ||||
RBAM_007110__ 101 AGCAGGAATCCATACCGGACGTCAACATGCCTTACCTT-----TCAGTAA 145
BSNT_01150___ 147 -CACGACATATCCGGGTGCGACACCAAGCCAAGTGGCTGATGAAGTGACC 195
.|||||.|||||.||.||..|.||.||.|||||.||.|||||.|||||.
RBAM_007110__ 146 ATACGACTTATCCCGGAGCTGCTCCGAGTCAAGTTGCGGATGACGTGACA 195
BSNT_01150___ 196 AAACCGGTTGAACAAGCCGTGCAGAACTTGGACGGTGTCAGTGTTGTGAC 245
||||||.|.||.||.||.||.|||||.||.||.||.||.||.||.||.||
RBAM_007110__ 196 AAACCGATCGAGCAGGCGGTCCAGAATTTAGAAGGAGTGAGCGTCGTAAC 245
BSNT_01150___ 246 GTCGACGTCCTATGAAAACGCATCGTCGGTCATGATTGAATATGATTATG 295
|||.||.||||.||||||||..||.|||||.|||||||||||||||||..
RBAM_007110__ 246 GTCCACATCCTCTGAAAACGTCTCATCGGTTATGATTGAATATGATTACA 295
BSNT_01150___ 296 AGAAAGATATGGACAAAGCGAAAACAGAAGCAGCTGAAGCGTTAGAAAAC 345
|.||.|||||||||||.||||||||.||||..|||||||||.|.||.|..
RBAM_007110__ 296 ACAAGGATATGGACAAGGCGAAAACCGAAGTCGCTGAAGCGCTGGACAGT 345
BSNT_01150___ 346 GTCAACCTGCCTGATGACGCGAAGGATCCGGAGATTTCACGCTACAGCTT 395
||||.|||.|||||.||||||||..|.||.||.|||||.||.||||||.|
RBAM_007110__ 346 GTCAGCCTTCCTGACGACGCGAAAAAACCTGACATTTCCCGTTACAGCCT 395
BSNT_01150___ 396 GAATTCATTCCCGATTCTGACGCTGAGCGTGTCCAGTGATAAA-----GA 440
.||.||.|||||||||.|||||||.||.|||.|.||.|..||| |
RBAM_007110__ 396 CAACTCTTTCCCGATTTTGACGCTCAGTGTGACAAGCGGCAAAAGCTCG- 444
BSNT_01150___ 441 TAATCTACAAGAGCTGACGAAACAAGTGGAGGACAGCCTCGTTTCTAAAC 490
||..||||.|||||.|||.|.|||||..|||..||||||.||||.|
RBAM_007110__ 445 ----CTTGAAGACCTGACCAAAAATGTGGAAAACACTCTCGTTCCTAAGC 490
BSNT_01150___ 491 TTGAAGGCATAGAAGGCGTTGCGTCCGTCCAAGTATCAGGCCAGCAGGTG 540
||||||||||..|.|||||||||||.||.|||||.||.||.|||||||..
RBAM_007110__ 491 TTGAAGGCATTCAGGGCGTTGCGTCTGTGCAAGTTTCCGGACAGCAGGAA 540
BSNT_01150___ 541 GAAGAGGTTGAATTCTCTTTCAAAGAAGACAAACTGAAGGAATACGGCCT 590
||..||||.|||||||||||||||||..|.|||.||||.||.|||||.||
RBAM_007110__ 541 GAGCAGGTGGAATTCTCTTTCAAAGACAAAAAAATGAAAGAGTACGGACT 590
BSNT_01150___ 591 TGATGAAGATACAGTCAAGCAAGTGATTCAAGGTTCAGATGTGACAACTC 640
.|||||||||||.||||||.|||||||.|||||.||.||.||.|..||.|
RBAM_007110__ 591 CGATGAAGATACCGTCAAGAAAGTGATCCAAGGCTCTGACGTCAATACGC 640
BSNT_01150___ 641 CGCTTGGATTGTACACATTCGGAAATGAAGAAAAATCTGTCGTCGTCAGC 690
||||||||||||||||||||||.||..||||||||||.||.|||||.|.|
RBAM_007110__ 641 CGCTTGGATTGTACACATTCGGCAACAAAGAAAAATCAGTTGTCGTTAAC 690
BSNT_01150___ 691 GGCGATATTGAAACAATTAAAGATTTGAAGAATATGAGAATCCCGACGGC 740
||.||||||....|||||||||||.||||..||||||||||.|||....|
RBAM_007110__ 691 GGAGATATTACGGCAATTAAAGATCTGAAAGATATGAGAATTCCGGTCAC 740
BSNT_01150___ 741 ATCTGCTTCAAGTGCAGGCAGCAGCGCAGCATC----TCAAGCGGGTGCG 786
||||.|||| ||| ||| || |||||||| |||
RBAM_007110__ 741 ATCTTCTTC---TGC---------CGC----TCAAGGTCAAGCGG--GCG 772
BSNT_01150___ 787 CAG--AGTGC----TCAAGCAGCCCAAAGCGCACAAGC--GGCAGCACAG 828
.|| .|||| || .||.||..| |||.||.|| .|||| |||
RBAM_007110__ 773 GAGCCGGTGCGGCGTC-TGCGGCGGA---CGCTCAGGCTATGCAG--CAG 816
BSNT_01150___ 829 GCGCAGCAAAGCGCAAGCACAGCA---GTGCCGACGGTCAAGCTTTCTGA 875
||.||||||||||| ..||||| ||||||||.||||||||||||||
RBAM_007110__ 817 GCACAGCAAAGCGC---GTCAGCAGGGGTGCCGACAGTCAAGCTTTCTGA 863
BSNT_01150___ 876 CATTGCC-ACAATTAAAGATGTGAAAAAAGCTGAATCTGTTTCACGCACA 924
||||||| || ||||||||||||||||||||||||||..||||.|||||.
RBAM_007110__ 864 CATTGCCGAC-ATTAAAGATGTGAAAAAAGCTGAATCCATTTCCCGCACG 912
BSNT_01150___ 925 AATGGCAAAGACAGCATCGGCATCAATATCGTCAAAGCAAACGATGCGAA 974
||.||.||.|||||||||||.||.||||||||.|||||.||.||.||.||
RBAM_007110__ 913 AACGGAAAGGACAGCATCGGAATTAATATCGTAAAAGCCAATGACGCCAA 962
BSNT_01150___ 975 TACGGTAGAGGTTGCCGACAATG---TCAAAGCTGAGCTGAAGAAGTTCA 1021
.||||||||.||.|||| ||| |.||||.|||.|||||..|.|.||
RBAM_007110__ 963 CACGGTAGAAGTGGCCG---ATGCGATTAAAGATGAACTGAATCAATACA 1009
BSNT_01150___ 1022 AAGAAGACCATAAAGGCTTCAATTACAGCGCAACTCTCGACATGGCGGAG 1071
||.|||||||||||||.|||||.||||||.|.|||||.||.|||||.|||
RBAM_007110__ 1010 AAAAAGACCATAAAGGGTTCAAGTACAGCTCGACTCTTGATATGGCAGAG 1059
BSNT_01150___ 1072 CCGATCACACAGTCAGTTGACACGATGTTAAGCAAAGCCATCTTCGGTGC 1121
|||||.|||.||||.||.||.|||||||||||||||||.||.|||||.||
RBAM_007110__ 1060 CCGATTACAGAGTCGGTGGATACGATGTTAAGCAAAGCGATTTTCGGCGC 1109
BSNT_01150___ 1122 TATTTTTGCGATTGTGATTATTCTCTTATTCTTAAGAGATATCAAATCAA 1171
.|||||||||.|.|||||.|||||||||||||||||||||||.|||||||
RBAM_007110__ 1110 GATTTTTGCGGTCGTGATCATTCTCTTATTCTTAAGAGATATTAAATCAA 1159
BSNT_01150___ 1172 CATTAATTTCTGTTGTTTCAATTCCATTATCATTGCTGATCGCACTCCTT 1221
|..|.||||||.|.|||||.||.||..|.|||.|||||||.||.||.|||
RBAM_007110__ 1160 CGATGATTTCTATCGTTTCCATCCCGCTGTCACTGCTGATTGCGCTTCTT 1209
BSNT_01150___ 1222 GTGCTGCAGCAGCTTGATATCACATTGAATATTATGACGCTCGGCGCAAT 1271
||||||.|.|||||||||.||||||||||.||.|||||||||||.||.||
RBAM_007110__ 1210 GTGCTGAATCAGCTTGATGTCACATTGAACATAATGACGCTCGGTGCGAT 1259
BSNT_01150___ 1272 GACCGTTGCCATCGGACGTGTAGTCGATGACTCCATCGTTGTCATCGAGA 1321
|||.||.|||||||||||.||||||||.|||||.||.||.||.|||||.|
RBAM_007110__ 1260 GACGGTCGCCATCGGACGGGTAGTCGACGACTCGATTGTCGTGATCGAAA 1309
BSNT_01150___ 1322 ACATTTACCGCCGCATGAGACTCAAAGATGAGCCGCTCCGCGGAAAAGC- 1370
|||||||||||||||||||.||.||||||||.||..|.||||| .||||
RBAM_007110__ 1310 ACATTTACCGCCGCATGAGGCTGAAAGATGAACCTTTACGCGG-GAAGCA 1358
BSNT_01150___ 1371 ATTGGTTCGTGAAGCGACGAAGGAAATGTTTAAACCGATCATGTCATCGA 1420
||||||.||||||||||||||.||||||||||||||||||||||||||.|
RBAM_007110__ 1359 ATTGGTGCGTGAAGCGACGAAAGAAATGTTTAAACCGATCATGTCATCAA 1408
BSNT_01150___ 1421 CGATCGTGACAATCGCGGTATTCCTGCCGCTCGCACTTGTAGGCGGACAA 1470
|||||||.||.||.||.||||||||||||||.||..|.||.||||||||.
RBAM_007110__ 1409 CGATCGTAACCATTGCCGTATTCCTGCCGCTTGCCATGGTCGGCGGACAG 1458
BSNT_01150___ 1471 ATCGGTGAATTGTTTATTCCATTTGCCTTAACGATTGTTTTTGCGCTTGC 1520
|||||.|||.|||||||.||.|||||.|||||.||.||.||.||||||||
RBAM_007110__ 1459 ATCGGCGAACTGTTTATGCCGTTTGCATTAACAATCGTCTTCGCGCTTGC 1508
BSNT_01150___ 1521 CGCATCACTGGTGATTTCAATCACGCTTGTGCCGATGCTCGCACACAGCC 1570
||||||.|||.|||||||.|||||.||.|||||||||||.||.||||||.
RBAM_007110__ 1509 CGCATCGCTGTTGATTTCGATCACACTGGTGCCGATGCTTGCGCACAGCT 1558
BSNT_01150___ 1571 TGTTCAAAAAATCATTAACCGGTGCGCCGATTAAAGCGAAAGAACACAAA 1620
|.|||||||||||..|.||.||.|||||..|||||||||||||.||.||.
RBAM_007110__ 1559 TATTCAAAAAATCGCTCACAGGCGCGCCTGTTAAAGCGAAAGAGCATAAG 1608
BSNT_01150___ 1621 CCAGGCAGACTTGCAAACATCTATAAAAAAGTATTGAACTGGGCGCTGAG 1670
||.||||||.|.||.||..|||||||||||||..||.|.|||.|..|.||
RBAM_007110__ 1609 CCGGGCAGATTGGCCAATTTCTATAAAAAAGTGCTGCATTGGTCATTAAG 1658
BSNT_01150___ 1671 CCACAAATGGATCACGTCTATCATCGCTGTTCTGATGCTCCTTGGAAGCT 1720
.||.||||||||.||.|||||||||||.|||||||||||..|.||.||.|
RBAM_007110__ 1659 ACATAAATGGATTACATCTATCATCGCGGTTCTGATGCTTGTCGGCAGTT 1708
BSNT_01150___ 1721 TGTTCCTCGTACCGTTAATCGGTGCCAGCTACCTGCCGTCCG-AGGAAGA 1769
|||||||||||||..|.|||||.||.||||||||||| |.|| |.|..||
RBAM_007110__ 1709 TGTTCCTCGTACCTCTGATCGGCGCGAGCTACCTGCC-TGCGCAAGCGGA 1757
BSNT_01150___ 1770 AAAAACGATGCAGCTCACATACAGCCCAGAACCGGGTGAAACGAAAAAAG 1819
.||||||||||||||||||||||..||.||||||||.||||||||||..|
RBAM_007110__ 1758 CAAAACGATGCAGCTCACATACACGCCTGAACCGGGCGAAACGAAAAGCG 1807
BSNT_01150___ 1820 AAGCCGAAAATGAAGCTG---AAAAAGCGGAAAAAATCCTGCTTGACCGC 1866
||||.|||| |||||| |||||||||||.|.||.||||||.|.|||
RBAM_007110__ 1808 AAGCTGAAA---AAGCTGCGCAAAAAGCGGAAGACATGCTGCTTAAACGC 1854
BSNT_01150___ 1867 AAGCATGTCGATACGGTTCAGTATTCATTAGGCTCTGGC--AGCCCGCT- 1913
||.|||||||||||.|||||||||||||||||||| || ||.|||||
RBAM_007110__ 1855 AAACATGTCGATACCGTTCAGTATTCATTAGGCTC--GCAAAGTCCGCTC 1902
BSNT_01150___ 1914 TGCGGGAGGAGATTCTAACGGCGCGTTATTCTATATCAAATATGAAAGCG 1963
.||||.|| .||.||||||||.||.|||||..|.|||||.||....|
RBAM_007110__ 1903 GGCGGAAG----CTCAAACGGCGCATTGTTCTACGTGAAATACGAGGATG 1948
BSNT_01150___ 1964 ACACACCTGACTTTGATAAAGAAAAAGATAACGTTCTGAAGGAAATCCAA 2013
||||.|||||.|||||.|||||||||||.||.||..|.||.||||||.||
RBAM_007110__ 1949 ACACGCCTGATTTTGACAAAGAAAAAGACAATGTCTTAAAAGAAATCAAA 1998
BSNT_01150___ 2014 AAGCAATCTGACCGCGGAGAATGGAAGTCACAGGACTTCAGCTCTTCAGG 2063
||...|||...||||||.||||||||.|||||..|.|||||.||.|||||
RBAM_007110__ 1999 AAAACATCCAGCCGCGGCGAATGGAAATCACAAAATTTCAGTTCGTCAGG 2048
BSNT_01150___ 2064 CAATAACAACGAATTAACATACTATGTGTATGGCGATTCTGAAAACGATA 2113
|||.||||||||||||||.|||||||||||.||.|||||.||....||||
RBAM_007110__ 2049 CAACAACAACGAATTAACGTACTATGTGTACGGAGATTCAGAGTCTGATA 2098
BSNT_01150___ 2114 TTAAAGACACGGTCAAAGATATTGAAAAAATCATGAAGGATGAAAAGGAT 2163
||||||.||||||||||||.||.|||...||||||||..|..|.||||||
RBAM_007110__ 2099 TTAAAGGCACGGTCAAAGACATCGAAGGCATCATGAAAAAGCAGAAGGAT 2148
BSNT_01150___ 2164 CTGAAAAACGTAAACTCAGGCCTTTCCAGCACATATGATGAGTACACATT 2213
||||||.||.|.|||||||||||||||||||||||||||||||||||.||
RBAM_007110__ 2149 CTGAAAGACATCAACTCAGGCCTTTCCAGCACATATGATGAGTACACGTT 2198
BSNT_01150___ 2214 TGTCGCTGACCAAGAAAAACTAAGCAAACTCGGTTTAACTGCGTCTCAAA 2263
||||||||||||.||.|||||.|||||.|..||..|.||.||.||.||||
RBAM_007110__ 2199 TGTCGCTGACCAGGAGAAACTCAGCAAGCAGGGCCTGACGGCTTCGCAAA 2248
BSNT_01150___ 2264 TTTCTCAGGCCTTAATGTCACAAACATCACAAGAACCGCTCACAACTGTG 2313
|.||.||.|||.|.|||||.|||||.|||||....||..|.|||||.|||
RBAM_007110__ 2249 TCTCCCAAGCCCTGATGTCCCAAACGTCACAGTCTCCTTTGACAACGGTG 2298
BSNT_01150___ 2314 AAAAAAGACGGCAAAGAGCTTGATGTGAACATTAAGACAGAAAAAGACGA 2363
|||||.|||||||||||||||||.||.|||||.||.||||||||||||.|
RBAM_007110__ 2299 AAAAAGGACGGCAAAGAGCTTGACGTCAACATCAAAACAGAAAAAGACCA 2348
BSNT_01150___ 2364 GTATAAGAGTGTGAAAGATTTAGAGAATAAAAAGATCACTTCCGCGACTG 2413
||||||||||||.|||||.||||||.||||||..|||||.||..|..|.|
RBAM_007110__ 2349 GTATAAGAGTGTAAAAGAATTAGAGGATAAAACCATCACATCGCCTGCAG 2398
BSNT_01150___ 2414 GCCAGGAAGTCAAAATCGGCGATGTGGCAAAAGTGAAGGAAGGATCAACA 2463
||||.|||||.|||||||||||||||||.||||||||..|.||..|.|||
RBAM_007110__ 2399 GCCAAGAAGTAAAAATCGGCGATGTGGCGAAAGTGAAAAACGGCACGACA 2448
BSNT_01150___ 2464 TCAGATACCGTGTCAAAACGTGATGGAAAAGTCTATGCGGATGTCACAGG 2513
||.||||||.|.||.|||||.||.||.|||||.||.||.||.||.|| ||
RBAM_007110__ 2449 TCCGATACCATTTCCAAACGCGACGGCAAAGTGTACGCTGACGTAAC-GG 2497
BSNT_01150___ 2514 TGA-GGTTACGTCTGACAACGTCAC--AGCCGT-ATCAGCTGCTATCCAG 2559
..| .||.||.|||||||||||||| ||..|| ||||||.| |.||.
RBAM_007110__ 2498 CAACCGTCACTTCTGACAACGTCACGAAGGTGTCATCAGCCG---TTCAA 2544
BSNT_01150___ 2560 AAGAAAATCGATAAGCTAGACCATCCTGATAACGTATCGATTGACACAGG 2609
||||||.|.||.||.||.||.||.||.||.||.|||||||||||.||.||
RBAM_007110__ 2545 AAGAAAGTGGACAAACTGGATCACCCGGACAATGTATCGATTGATACCGG 2594
BSNT_01150___ 2610 CGGCGTATCAGCGGATATCGCTGATTCCTTCACGAAGCTCGGTTTAGCGA 2659
|||.||||||||||||||.|||||||||||.|||||.|||||.|||||.|
RBAM_007110__ 2595 CGGTGTATCAGCGGATATTGCTGATTCCTTTACGAAACTCGGCTTAGCAA 2644
BSNT_01150___ 2660 TGCTGGCAGCAATAGCGATCGTTTACCTTGTGCTCGTGATTACCTTCGGC 2709
||||.||.|||||.||.|||||.|||||.||.||.|||||.||.||||||
RBAM_007110__ 2645 TGCTTGCCGCAATCGCCATCGTATACCTCGTTCTTGTGATCACGTTCGGC 2694
BSNT_01150___ 2710 GGAGCACTAGCGCCATTTGCTATTCTGTTCTCATTGCCGTTCACAGTCAT 2759
||||||.|||||||.|||||.|||||||||||..|.|||||.||||||||
RBAM_007110__ 2695 GGAGCATTAGCGCCGTTTGCGATTCTGTTCTCGCTTCCGTTTACAGTCAT 2744
BSNT_01150___ 2760 CGGTGCCCTGGTCGGACTTTACGTATCAGGTGAAACGATCAGTCTGAACG 2809
|||.||..|.|.||||||.||.|||||.||.||.|||||||||||.||.|
RBAM_007110__ 2745 CGGCGCATTAGCCGGACTGTATGTATCCGGAGAGACGATCAGTCTAAATG 2794
BSNT_01150___ 2810 CAATGATCGGTATGCTCATGCTGATCGGTATCGTTGTCACGAATGCGATT 2859
|.||||||||||||||.|||||||||||.|||||.|||||.|||||||||
RBAM_007110__ 2795 CCATGATCGGTATGCTGATGCTGATCGGAATCGTCGTCACAAATGCGATT 2844
BSNT_01150___ 2860 GTCTTAATTGACCGCGTGATTCATAAGGAAGCGGAAGGCCTGTCGACGAG 2909
|||||||||||||||||.||.|||||.||||||||||||.|.||||||||
RBAM_007110__ 2845 GTCTTAATTGACCGCGTCATCCATAAAGAAGCGGAAGGCTTATCGACGAG 2894
BSNT_01150___ 2910 AGAAGCGCTCCTGGAAGCCGGCTCTACACGACTCCGTCCGATCCTGATGA 2959
|||||||||||||||||||||||||||..||.|.||||||||.|||||||
RBAM_007110__ 2895 AGAAGCGCTCCTGGAAGCCGGCTCTACGAGATTGCGTCCGATTCTGATGA 2944
BSNT_01150___ 2960 CAGCCATTGCGACAATCGGCGCCTTGATTCCATTAGCCCTCGGCTTCGAA 3009
|.||.||.|||||||||||||||.||.|||||||.||..|.|||||||||
RBAM_007110__ 2945 CGGCGATCGCGACAATCGGCGCCCTGCTTCCATTGGCATTGGGCTTCGAA 2994
BSNT_01150___ 3010 GGCGGAAGCCAGGTCATTTCAAAAGGACTCGGCGTCACGGTTATCGGCGG 3059
||||||||||||||||||||.|||||||||||.|||||.|||||||||||
RBAM_007110__ 2995 GGCGGAAGCCAGGTCATTTCTAAAGGACTCGGTGTCACCGTTATCGGCGG 3044
BSNT_01150___ 3060 CTTGATCAGTTCAACGCTTCTGACGCTCTTGATCGTGCCAATCGTATATG 3109
.||.||||||||.||.||.||.||.||..||||.|||||.||||||||||
RBAM_007110__ 3045 TTTAATCAGTTCGACTCTGCTTACCCTTCTGATTGTGCCGATCGTATATG 3094
BSNT_01150___ 3110 AAGTATTGGCGAAGTTCCGCAAGAAAAAACCGGGAACGGAAGAAGAGTAA 3159
|||||||.|||||.|||||.|||||||||||.||||||||||||||||||
RBAM_007110__ 3095 AAGTATTAGCGAAATTCCGTAAGAAAAAACCTGGAACGGAAGAAGAGTAA 3144
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