Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01149 and RBAM_007100
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:51
# Commandline: needle
# -asequence dna-align/BSNT_01149___yerO.1.9828.seq
# -bsequence dna-align/RBAM_007100___yerO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01149___yerO-RBAM_007100___yerO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01149___yerO-RBAM_007100___yerO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01149___yerO
# 2: RBAM_007100___yerO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 915
# Identity: 593/915 (64.8%)
# Similarity: 593/915 (64.8%)
# Gaps: 132/915 (14.4%)
# Score: 1809.0
#
#
#=======================================
BSNT_01149___ 1 ATGAATGAAAAAAAAGAGAGAATCATAAAAACCAGCATTCGTTTATTTGC 50
|||||.|||||||||||||.||||||||||||..||||.|.|||||||||
RBAM_007100__ 1 ATGAACGAAAAAAAAGAGAAAATCATAAAAACAGGCATCCATTTATTTGC 50
BSNT_01149___ 51 GAAAAAAGGATTCGCAGCTACGACGATCCAAGAAATCGCCAGTGAATGCG 100
.||||||||.||..|..|.||.||.||.||.|||||||||.|||||||||
RBAM_007100__ 51 CAAAAAAGGGTTTTCTTCAACAACCATTCAGGAAATCGCCGGTGAATGCG 100
BSNT_01149___ 101 GCATTTCGAAGGGCGCTTTTTATTTGCACTTCAAATCGAAAGAAGCGCTG 150
|.|||||.||.||.||.||.|||.|.||.||||||||.|||||||..||.
RBAM_007100__ 101 GAATTTCAAAAGGGGCCTTCTATCTCCATTTCAAATCAAAAGAAGACCTT 150
BSNT_01149___ 151 CTGTTATCTGCCTGTGAATATTATATCGGTATGTCTATGAACAAAATGAA 200
.||.|.||.||.|||||.|||||.|||||.|||||||||.|..||||.||
RBAM_007100__ 151 TTGCTCTCAGCATGTGAGTATTACATCGGCATGTCTATGGAAGAAATAAA 200
BSNT_01149___ 201 AAATATAGAAGAAGATCTTGCCGGA-AAGCCGCCTAAAGAAGTTTTGAAA 249
.||.||..||..|||.|.| |.|.| ||.||||||||.||.||.||...|
RBAM_007100__ 201 GAAAATCAAAACAGAACAT-CAGCATAAACCGCCTAAGGACGTATTCCGA 249
BSNT_01149___ 250 AAACAAATTGGCGC---TCAATTTGAGGATTTTCGCGATCATAAAGATTT 296
|||||||| ||| ||||||..||||.|||...||.||.||.||.||
RBAM_007100__ 250 AAACAAAT---CGCATATCAATTCCAGGAATTTATGGAACACAAGGACTT 296
BSNT_01149___ 297 TATCGTTCTTTTGCTTACCGAAAATATCATTCCGGAAAATCAAGAAATCA 346
||||.||||.|||||.|.||||||..|||||||.|||||||||.|..|||
RBAM_007100__ 297 TATCATTCTCTTGCTGAGCGAAAAGGTCATTCCTGAAAATCAAAAGGTCA 346
BSNT_01149___ 347 AGCAATACTTT-------------TACAAAGTAACCATGGAGACGGATAA 383
|.||.||.||| |.|||..|||| |.
RBAM_007100__ 347 AACAGTATTTTCATGAGGCCAATATTCAATTTAAC-------------AT 383
BSNT_01149___ 384 GCTGTACCGGAACGCCTTGCTGGTATCC---TATGGCGAAGGAATCGAGC 430
||||||.|||.|.||.|||| |.||| ||.||.||.|...||...|
RBAM_007100__ 384 GCTGTATCGGGATGCGTTGC---TCTCCGTTTACGGAGATGCCGTCACAC 430
BSNT_01149___ 431 GGTATGTCGCAGATCTGTCCATCATGGCAAGAGGCATTGTGCATTCCTAT 480
.||.|.|.||.|||..||||.|.|||||...|||.||||||...||||||
RBAM_007100__ 431 CGTTTTTAGCGGATGCGTCCGTTATGGCGCAAGGAATTGTGAGCTCCTAT 480
BSNT_01149___ 481 ATGAACGTGATGGTATTTAACGATGAGCTTAATATCG--ATGCAGAA--G 526
||..|..|..||.|.|||| ||||.|.|| || ||.|.|.| |
RBAM_007100__ 481 ATTCATTTCTTGATTTTTA---ATGAACATA----CGGCATTCCGGACGG 523
BSNT_01149___ 527 AAA---TCTCAGCCTTTATTATTGAGAGACTGGATGATCTTG--TACAGG 571
||| |..|.||||||.|.||||..|||.|.||||||| || ||| ||
RBAM_007100__ 524 AAAACGTGGCGGCCTTTCTGATTGCCAGAATCGATGATC-TGATTAC-GG 571
BSNT_01149___ 572 GGCTGAGCCGTTCTGCACTCAAT-CCGAT----TG-TATCAAAAGACATT 615
|.||||...| |..|||| ||||| || |..|..|.||.||.
RBAM_007100__ 572 GACTGATAAG------AGACAATCCCGATCCGCTGCTGCCTGAGGATATC 615
BSNT_01149___ 616 T----TCAACCCGATGCCTGCGGAAAAAGACCAG-CTGCTTGAGGACATT 660
| |||.|||| |.|||||.|.||| .|| |||||||.|||.|||
RBAM_007100__ 616 TTCACTCAGCCCG----CGGCGGACAGAGA-AAGACTGCTTGCGGATATT 660
BSNT_01149___ 661 CAGAAAGTGAAAGAAAACAGCAC-------GCTGCCCGAGGATATCACCG 703
|| |||||.||.||||| ||||||.|||||..||..||
RBAM_007100__ 661 CA-------AAAGATAAAAGCACAGCAGGGGCTGCCTGAGGACGTCCTCG 703
BSNT_01149___ 704 TGTCACTTGATGTTATCGAGGAAGAAT-TGACTCAGGATAAACCGCGCAA 752
|.||.|||||.||.||.||.||.|||| || |..||||..|.|||||.||
RBAM_007100__ 704 TATCGCTTGAAGTCATTGAAGAGGAATGTG-CAAAGGAAGAGCCGCGAAA 752
BSNT_01149___ 753 GCCGATTATTAAAGGCATGCTGTCCAATTTGACCGGAACCAACGACAA-- 800
.||||||||||||||.|||||||||||.|||.|.|| ||.||..||
RBAM_007100__ 753 ACCGATTATTAAAGGAATGCTGTCCAACTTGGCAGG---CAGCGGAAATG 799
BSNT_01149___ 801 AGAAG-TTGAAAGGCTTCGGGC-----------CC----TCATCTCTGTC 834
||.|| ||||||.|||.||||| || |||||
RBAM_007100__ 800 AGCAGATTGAAACGCTGCGGGCTTCCATTGAAACCTATTTCATC------ 843
BSNT_01149___ 835 TTTATCTCAATTTGA 849
|||| ||
RBAM_007100__ 844 -TTAT---AA----- 849
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