Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01147 and RBAM_007080
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:51
# Commandline: needle
# -asequence dna-align/BSNT_01147___gatA.1.9828.seq
# -bsequence dna-align/RBAM_007080___gatA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01147___gatA-RBAM_007080___gatA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01147___gatA-RBAM_007080___gatA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01147___gatA
# 2: RBAM_007080___gatA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1461
# Identity: 1240/1461 (84.9%)
# Similarity: 1240/1461 (84.9%)
# Gaps: 6/1461 ( 0.4%)
# Score: 5299.0
#
#
#=======================================
BSNT_01147___ 1 ATGTCATTATTTGATCATAAAATCACAGAATTAAAACAGCTCATACATAA 50
|||||||||||||||||.||||||||||||.|.|||||..|.||||||||
RBAM_007080__ 1 ATGTCATTATTTGATCACAAAATCACAGAACTGAAACAAATGATACATAA 50
BSNT_01147___ 51 AAAAGAGATTAAGATTTCTGATCTGGTTGACGAATCTTATAAACGCATCC 100
||||||.||.||||||||.|||||.|||||.||||||||.|||||.|||.
RBAM_007080__ 51 AAAAGAAATCAAGATTTCCGATCTTGTTGATGAATCTTACAAACGGATCG 100
BSNT_01147___ 101 AAGCGGTTGATGATAAGGTACAAGCCTTTTT--GGCATTAGATGAAGAAA 148
.|.|.||.|||||||||||.||.||.||||| .|| |.||||||||||
RBAM_007080__ 101 CATCCGTGGATGATAAGGTGCAGGCGTTTTTACAGC--TTGATGAAGAAA 148
BSNT_01147___ 149 GAGCGCGCGCATACGCGACGGAGCTTGATGAGGCGGTTGACGGCCGTTCT 198
||||.|||||.|||||||..||.|||||.||.|||||||||||.||.|||
RBAM_007080__ 149 GAGCCCGCGCTTACGCGAAAGAACTTGACGAAGCGGTTGACGGACGGTCT 198
BSNT_01147___ 199 GAGCACGGTCTTCTTTTCGGTATGCCGATCGGCGTAAAAGATAATATCGT 248
||.|||||||||||.|||||.||||||||||||||.|||||.||.|||||
RBAM_007080__ 199 GAACACGGTCTTCTCTTCGGAATGCCGATCGGCGTCAAAGACAACATCGT 248
BSNT_01147___ 249 AACAAAAGGGCTGCGCACAACATGCTCCAGCAAAATTCTCGAAAACTTTG 298
.||.||||||||.||||||||||||||.||||||||.|||||||||||.|
RBAM_007080__ 249 GACCAAAGGGCTTCGCACAACATGCTCAAGCAAAATCCTCGAAAACTTCG 298
BSNT_01147___ 299 ATCCGATTTATGACGCTACTGTCGTTCAGCGCCTTCAAGACGCTGAAGCG 348
||||||||||.||.||.||.|||||..||||||||||||..||||||||.
RBAM_007080__ 299 ATCCGATTTACGATGCGACGGTCGTGGAGCGCCTTCAAGCTGCTGAAGCC 348
BSNT_01147___ 349 GTCACAATCGGAAAACTGAACATGGACGAATTCGCCATGGGGTCATCTAC 398
|||||.||||||||.|||||.||||||||.|||||.|||||.||.|||||
RBAM_007080__ 349 GTCACGATCGGAAAGCTGAATATGGACGAGTTCGCGATGGGTTCTTCTAC 398
BSNT_01147___ 399 CGAAAACTCTGCTTAC-AAGCTGACGAAAAACCCTTGGAACCTGGATACA 447
.||||||||.||.||| |||| ||||||||||||||||||.||.|||||.
RBAM_007080__ 399 TGAAAACTCCGCGTACAAAGC-GACGAAAAACCCTTGGAATCTCGATACG 447
BSNT_01147___ 448 GTTCCCGGCGGTTCAAGCGGCGGATCTGCGGCTGCGGTTGCTGCGGGAGA 497
|||||||||||.|||||||||||.||.||.|||||||||||.|||||.||
RBAM_007080__ 448 GTTCCCGGCGGATCAAGCGGCGGTTCCGCAGCTGCGGTTGCCGCGGGCGA 497
BSNT_01147___ 498 AGTTCCGTTTTCTCTTGGATCTGACACAGGCGGCTCCATCCGTCAGCCGG 547
|||.||||||||.||.||||||||.||.||||||||||||||.|||||||
RBAM_007080__ 498 AGTGCCGTTTTCACTCGGATCTGATACGGGCGGCTCCATCCGCCAGCCGG 547
BSNT_01147___ 548 CTTCTTTCTGCGGCGTTGTCGGATTAAAACCTACATACGGCCGTGTATCT 597
||||||||||||||||.|||||||||||.|||||||||||.||.||.||.
RBAM_007080__ 548 CTTCTTTCTGCGGCGTCGTCGGATTAAAGCCTACATACGGACGCGTGTCG 597
BSNT_01147___ 598 CGTTACGGACTGGTCGCATTTGCGTCTTCATTAGACCAAATCGGACCGAT 647
||||||||..|||||||.||||||||||||.|.|||||.|||||.|||||
RBAM_007080__ 598 CGTTACGGTTTGGTCGCTTTTGCGTCTTCACTGGACCAGATCGGGCCGAT 647
BSNT_01147___ 648 TACACGTACGGTTGAGGATAACGCGTTTTTACTTCAAGCGATTTCTGGCG 697
.|||.|.||.||.||.||||||||.||..|.|||||.||||||||.|||.
RBAM_007080__ 648 CACAAGAACCGTAGAAGATAACGCATTCCTGCTTCAGGCGATTTCAGGCC 697
BSNT_01147___ 698 TAGATAAAATGGACTCCACGAGTGCAAATGTGGACGTGCCTGATTTTCTT 747
..||.|||||||||||.|||||.||.|||||.||.|||||.||.||||||
RBAM_007080__ 698 CGGACAAAATGGACTCTACGAGCGCCAATGTCGAAGTGCCGGACTTTCTT 747
BSNT_01147___ 748 TCTTCATTAACTGGCGACATCAAAGGACTGAAAATCGCCGTTCCGAAAGA 797
|||||||||||||||||.||.|||||..|.|||||||||||.||||||||
RBAM_007080__ 748 TCTTCATTAACTGGCGATATTAAAGGCTTAAAAATCGCCGTACCGAAAGA 797
BSNT_01147___ 798 ATACCTTGGTGAAGGTGTCGGCAAAGAAGCGAGAGAATCTGTCTTGGCAG 847
|||.||.||.|||||.||||||||||||||||.||||||.||.||.||.|
RBAM_007080__ 798 ATATCTCGGAGAAGGCGTCGGCAAAGAAGCGAAAGAATCGGTTTTAGCCG 847
BSNT_01147___ 848 CGCTGAAAGTCCTTGAAGGTCTCGGCGCTACATGGGAAGAAGTGTCTCTT 897
|..|.|||||.|||||||..|||||.||.||||||||||||||.|||||.
RBAM_007080__ 848 CTTTAAAAGTGCTTGAAGACCTCGGAGCGACATGGGAAGAAGTATCTCTG 897
BSNT_01147___ 898 CCGCACAGTAAATACGCGCTTGCGACATATTACCTGCTGTCATCTTCTGA 947
||||||||.|||||||||||||||||.|||||.||||||||.|||||.||
RBAM_007080__ 898 CCGCACAGCAAATACGCGCTTGCGACGTATTATCTGCTGTCTTCTTCCGA 947
BSNT_01147___ 948 AGCGTCAGCGAACCTTGCACGCTTTGACGGCATCCGCTACGGCTACCGCA 997
||||||.||.||||||||.||||||||||||||||||||||||||||||.
RBAM_007080__ 948 AGCGTCTGCAAACCTTGCGCGCTTTGACGGCATCCGCTACGGCTACCGCT 997
BSNT_01147___ 998 CAGACAACGCGGATAACCTGATCGACCTTTACAAGCAAACACGCGCTGAA 1047
||||.||.|||||.|||||||||||||||||.||.||.||||||.|.|||
RBAM_007080__ 998 CAGATAATGCGGACAACCTGATCGACCTTTATAAACAGACACGCTCAGAA 1047
BSNT_01147___ 1048 GGTTTTGGAAATGAAGTCAAACGCCGCATCATGCTTGGAACGTTTGCTTT 1097
||.||.||.||||||||.||.||||||||||||||.||.||.||.||..|
RBAM_007080__ 1048 GGCTTCGGCAATGAAGTGAAGCGCCGCATCATGCTCGGCACCTTCGCGCT 1097
BSNT_01147___ 1098 AAGCTCAGGCTACTACGATGCGTACTACAAAAAAGCGCAAAAAGTGCGTA 1147
.|||||.||||||||.||.|||||.|||||||||||||||||||||||.|
RBAM_007080__ 1098 CAGCTCCGGCTACTATGACGCGTATTACAAAAAAGCGCAAAAAGTGCGCA 1147
BSNT_01147___ 1148 CGTTGATTAAGAAGGATTTTGAAGACGTATTTGAAAAATATGATGTTATT 1197
||.|.||||||||.||||||||||||||||||||.|||||.|||||.||.
RBAM_007080__ 1148 CGCTTATTAAGAAAGATTTTGAAGACGTATTTGAGAAATACGATGTCATC 1197
BSNT_01147___ 1198 GTTGGACCGACTACACCGACACCTGCGTTTAAAATCGGTGAAAACACGAA 1247
||.||||||||.||.||||||||.||.||.||||||||.|||||.||.|.
RBAM_007080__ 1198 GTCGGACCGACAACGCCGACACCGGCATTCAAAATCGGCGAAAAAACCAG 1247
BSNT_01147___ 1248 GGATCCGCTCACAATGTACGCAAACGATATCTTAACGATTCCGGTCAACC 1297
.||||||||||||||||||||.||||||||.||||||||.||.|||||||
RBAM_007080__ 1248 CGATCCGCTCACAATGTACGCCAACGATATTTTAACGATCCCTGTCAACC 1297
BSNT_01147___ 1298 TTGCCGGCGTACCGGGAATCAGCGTGCCATGCGGATTAGCAGACGGACTT 1347
|.||.||.||.|||||||||||||||||.||||||||.||.||||||||.
RBAM_007080__ 1298 TCGCGGGTGTGCCGGGAATCAGCGTGCCGTGCGGATTTGCGGACGGACTG 1347
BSNT_01147___ 1348 CCGCTCGGCCTGCAAATCATCGGAAATCACTTTGACGAAAGCACTGTATA 1397
||||||||.|||||||||||||||||.|||||.||.|||.||||||||||
RBAM_007080__ 1348 CCGCTCGGACTGCAAATCATCGGAAAACACTTCGATGAAGGCACTGTATA 1397
BSNT_01147___ 1398 CCGCGTTGCTCATGCATTTGAACAAGCGACAGACCATCATAAAGCAAAAC 1447
||||||.||||||||.|||||.||.||.|||||.|||||||||||.||||
RBAM_007080__ 1398 CCGCGTCGCTCATGCTTTTGAGCAGGCAACAGATCATCATAAAGCGAAAC 1447
BSNT_01147___ 1448 CTGAACTGTAA 1458
|||||||||||
RBAM_007080__ 1448 CTGAACTGTAA 1458
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