Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01135 and RBAM_007030
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:50
# Commandline: needle
# -asequence dna-align/BSNT_01135___yerH.1.9828.seq
# -bsequence dna-align/RBAM_007030___yerH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01135___yerH-RBAM_007030___yerH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01135___yerH-RBAM_007030___yerH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01135___yerH
# 2: RBAM_007030___yerH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1205
# Identity: 940/1205 (78.0%)
# Similarity: 940/1205 (78.0%)
# Gaps: 22/1205 ( 1.8%)
# Score: 3631.5
#
#
#=======================================
BSNT_01135___ 1 TTGAAAAAGACGTTGGCATTGG------CGGCAACGGCGGCAGTATTAAT 44
||||||||||.||||||||||| |||||||||||||||||.|.||
RBAM_007030__ 1 TTGAAAAAGATGTTGGCATTGGCGGCGACGGCAACGGCGGCAGTACTCAT 50
BSNT_01135___ 45 GCTGTCTGCCTGCTCGTCAGGTTTTGGGGGGGAGAAGGAGGAAGAGATTA 94
||||||.|||||.|||.|..||||.||||||.|.||.|||||||||||.|
RBAM_007030__ 51 GCTGTCGGCCTGTTCGCCGAGTTTCGGGGGGAACAAAGAGGAAGAGATCA 100
BSNT_01135___ 95 CGCAAAAGACGGCGAAATCGTCAGAAAAAGCGATTGTCCCGAAATATAAT 144
||||.||.|||||.||.||.||.|||||||||||..|.||||||||||||
RBAM_007030__ 101 CGCAGAAAACGGCAAAGTCTTCTGAAAAAGCGATCATACCGAAATATAAT 150
BSNT_01135___ 145 ATCTCTGACTCCTATTACAAAATGGTGCTGCCGTTTAAGGCAGGCAAAGC 194
||||||||.|||||.||.|||||||||||.|||||||||||.||.|||||
RBAM_007030__ 151 ATCTCTGATTCCTACTATAAAATGGTGCTTCCGTTTAAGGCCGGAAAAGC 200
BSNT_01135___ 195 GCGCGGCTTAACAACGGAACAGCTGAATACTAGGCTGGACATTGACGAGT 244
|||||||.|.||..||||.|.||||||.||.|||||||||||.||.||.|
RBAM_007030__ 201 GCGCGGCCTGACCGCGGACCGGCTGAACACGAGGCTGGACATCGATGAAT 250
BSNT_01135___ 245 TTGAAACAGGGCTGATGCGTCTTGCCCAAGATTCTTTCTCGACTGACGAT 294
|.||.||.||.||||||||.||.||.|||||..|.|||.||||.||.||.
RBAM_007030__ 251 TCGAGACGGGTCTGATGCGGCTCGCTCAAGACACGTTCCCGACGGATGAC 300
BSNT_01135___ 295 TATCTGTTCCAAGAAGGACAATATTTAGATGAGGATACAGTATTAAGCTG 344
|||.|||..||.|||||.||.||||||||||||||.||.|||.|.|||||
RBAM_007030__ 301 TATTTGTATCAGGAAGGCCAGTATTTAGATGAGGACACGGTACTCAGCTG 350
BSNT_01135___ 345 GCTGGCACGGAAAAAAACGGGCTCTGATTTGAAAAAAGCCGAAAAA-GAA 393
|||.|..||.||||||...|||..||||.|| ||||||.||||||| |.|
RBAM_007030__ 351 GCTTGACCGCAAAAAAGAAGGCAGTGATCTG-AAAAAGGCGAAAAAGGCA 399
BSNT_01135___ 394 GATAAAAACTTCAAAAATGAAGGCTTGAACCCGGCGCTCCCGAGCTCTGG 443
|||...||.||..|.|||...|||||.||.||.|.|||.||.|||||.||
RBAM_007030__ 400 GATTCCAATTTTCAGAATCTCGGCTTAAATCCCGTGCTGCCAAGCTCGGG 449
BSNT_01135___ 444 TTCAACAGAAGAAAAGAACGAAAGCAGCCCGATTTATTTAGCATCCATGC 493
.||..||.||||.||.||.||||.||||||||||||.|||||.|||||||
RBAM_007030__ 450 ATCGGCAAAAGAGAAAAATGAAAACAGCCCGATTTACTTAGCGTCCATGC 499
BSNT_01135___ 494 TTGAGCATGATTATTTAGTCAGAAAAGATAAGAATTCTATCCAGCTTGGC 543
|||||||.|||||.|||||.|||||||||||.|||||.||||||||||||
RBAM_007030__ 500 TTGAGCAGGATTACTTAGTAAGAAAAGATAAAAATTCCATCCAGCTTGGC 549
BSNT_01135___ 544 GGCGTCATGATCGGACTGGCGTTAAACTCCGTGTATTACTATCGTGAAAA 593
||..||||||||||.||.||..|.|||||.||.||.||.||.||||||||
RBAM_007030__ 550 GGTATCATGATCGGTCTCGCTCTCAACTCTGTATACTATTACCGTGAAAA 599
BSNT_01135___ 594 AACTGGCGACCCGCAAAAAGAAGTGGAGATTAAGGACAGCACGCTCCGCC 643
.||.||.||.|||||..|.|||||||||.|.|..||||..|||.|||| |
RBAM_007030__ 600 CACAGGTGATCCGCAGCAGGAAGTGGAGCTCAGTGACAAAACGATCCG-C 648
BSNT_01135___ 644 AG-CAGGGAGAAAAAATTGCACAGGAGGTTATTAACCGCCTCCGCAAAAA 692
|| ||.||.|||.||||.||.|||||.||..||||||||||.||.||||.
RBAM_007030__ 649 AGCCACGGTGAAGAAATCGCCCAGGAAGTCGTTAACCGCCTTCGGAAAAT 698
BSNT_01135___ 693 AGATAACTTGAAGAATGTGCCGATTACCGTCGCGCTCTACAAGCAGGCGT 742
.||||||.||||.||||||||||||||||||||.||.||.||.||.|||.
RBAM_007030__ 699 GGATAACCTGAAAAATGTGCCGATTACCGTCGCCCTTTATAAACAAGCGC 748
BSNT_01135___ 743 CAAAAACATCGATTGTGCCGGGGAACTTCATCGCCAAAACAGAGGTCAAA 792
|.||||||||.||.||.||||||||.|.|||.||.||||||||.||||||
RBAM_007030__ 749 CGAAAACATCAATCGTACCGGGGAATTACATTGCAAAAACAGAAGTCAAA 798
BSNT_01135___ 793 GCAGGCTCTACTGAT-----ATCTCAAATTGGGATGACATCAATGAAAAA 837
||.||||| || ||.|||||.||||||||..||||.|||||.
RBAM_007030__ 799 GCCGGCTC-----ATCCACCATTTCAAACTGGGATGATGTCAAAGAAAAG 843
BSNT_01135___ 838 TATGTATTCTATCCGGCAGATACAACCACAGCAGAAAAATACCCGGATGA 887
||.||.|||||||||||.||||||..|||.|||.|.||||||||.|||||
RBAM_007030__ 844 TACGTCTTCTATCCGGCGGATACAGACACGGCAAAGAAATACCCTGATGA 893
BSNT_01135___ 888 CACCGAGGTCTTTAAGCGGTTCAAAAACTCAATTGA-AGAATATTTCCCG 936
..||||.||.|||||.||.|||||||||.|.||.|| || .||.||||||
RBAM_007030__ 894 TTCCGAAGTATTTAAACGCTTCAAAAACGCCATCGACAG-CTACTTCCCG 942
BSNT_01135___ 937 AACTATACAGGCGTTGTCGGTACAGCGCTGTATGAAAATGATGAAATGAA 986
||.||.||.||.||.|||||.||.||..||||.|||||.||||||||||.
RBAM_007030__ 943 AATTACACCGGAGTCGTCGGAACGGCAATGTACGAAAACGATGAAATGAG 992
BSNT_01135___ 987 GAAAATGAAGATTGACATACCAATGCAATTCTATGGAAAAAGTGAAGTTG 1036
.||||||||||||||.||.||.||||||||.||.||.|||||.|||||..
RBAM_007030__ 993 AAAAATGAAGATTGAAATCCCGATGCAATTTTACGGGAAAAGCGAAGTCA 1042
BSNT_01135___ 1037 TCGCGTTTACCCAGTTCTTAACGGGTGAAGTGATGGACTACTACTCTAAA 1086
||||.||||||||.|.||||||.|||||..|||||||.||.||.||.|||
RBAM_007030__ 1043 TCGCCTTTACCCAATACTTAACAGGTGAGCTGATGGATTATTATTCAAAA 1092
BSNT_01135___ 1087 GGCTCAGTTGATGTCGAAGTCAATATCACGTCCTCAGACGGACAGGAAGC 1136
||||||||||||||||||.|.||.||.||.||.||.|||||.||||||||
RBAM_007030__ 1093 GGCTCAGTTGATGTCGAAATTAACATTACCTCGTCTGACGGCCAGGAAGC 1142
BSNT_01135___ 1137 GGTTATTATCCGCAATGCCGGAGATAAAGAGCCGACTGTTCACATTTATG 1186
|.|.||..||||||||||.||.||.|||||.|||||.||.||.|||||.|
RBAM_007030__ 1143 GCTGATCGTCCGCAATGCGGGTGACAAAGAACCGACCGTCCATATTTACG 1192
BSNT_01135___ 1187 ACTGA 1191
|.|.|
RBAM_007030__ 1193 ATTAA 1197
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