Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01132 and RBAM_007010
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:49
# Commandline: needle
# -asequence dna-align/BSNT_01132___pcrA.1.9828.seq
# -bsequence dna-align/RBAM_007010___pcrA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01132___pcrA-RBAM_007010___pcrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01132___pcrA-RBAM_007010___pcrA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01132___pcrA
# 2: RBAM_007010___pcrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2230
# Identity: 1827/2230 (81.9%)
# Similarity: 1827/2230 (81.9%)
# Gaps: 20/2230 ( 0.9%)
# Score: 7555.0
#
#
#=======================================
BSNT_01132___ 1 TTGAATTATATTAGCAATCAATTACTAAGCGGTTTAAACCCCGTTCAGCA 50
.|||||||.|||||||||||||||.|||||||.|||||.|||||||||||
RBAM_007010__ 1 ATGAATTACATTAGCAATCAATTATTAAGCGGATTAAATCCCGTTCAGCA 50
BSNT_01132___ 51 GGAAGCAGTCAAAACAACGGACGGGCCTCTTTTGCTGATGGCGGGAGCGG 100
||||||.|||||.||.||||||||.||.||..|.|||||||||||.||||
RBAM_007010__ 51 GGAAGCGGTCAAGACGACGGACGGTCCCCTGCTTCTGATGGCGGGCGCGG 100
BSNT_01132___ 101 GAAGCGGAAAGACGCGTGTCCTGACACACAGAATTGCTTATTTAATGGCA 150
||||||||||.||.|||||.|||||.||||||||.||.||.||||||||.
RBAM_007010__ 101 GAAGCGGAAAAACACGTGTGCTGACGCACAGAATCGCATACTTAATGGCG 150
BSNT_01132___ 151 GAGAAGCATGTGGCGCCGTGGAACATTCTGGCGATCACATTTACAAATAA 200
||.||.||.||||||||.|||||||||||||||||.||||||||||||||
RBAM_007010__ 151 GAAAAACACGTGGCGCCATGGAACATTCTGGCGATTACATTTACAAATAA 200
BSNT_01132___ 201 AGCGGCACGCGAAATGAAAGAACGTGTGGAAAGCATCCTTGGACCCGGCG 250
|||.||..|.||||||||.||.||.|||||.|||||.||.||||||||||
RBAM_007010__ 201 AGCCGCCAGAGAAATGAAGGAGCGGGTGGAGAGCATTCTCGGACCCGGCG 250
BSNT_01132___ 251 CGGACGATATCTGGATTTCCACATTCCACAGCATGTGCGTGCGGATCTTG 300
||||.||.||||||||||||||.||||||||||||||.||||||||..||
RBAM_007010__ 251 CGGATGAAATCTGGATTTCCACCTTCCACAGCATGTGTGTGCGGATTCTG 300
BSNT_01132___ 301 CGCAGAGATATCGACCGGATTGGGATCAACCGAAATTTCTCCATCCTTGA 350
|||||.|||||.|||.|.||.||.||||||||||||||||||||.|||||
RBAM_007010__ 301 CGCAGGGATATTGACAGAATCGGCATCAACCGAAATTTCTCCATTCTTGA 350
BSNT_01132___ 351 TACGGGTGACCAGCTTTCAGTGATCAAGGGGATTTTGAAGGAGCGCAATC 400
|||||.|||.||||||||.||.||.||.||||||.||||.|||||.|||.
RBAM_007010__ 351 TACGGCTGATCAGCTTTCCGTTATTAAAGGGATTCTGAAAGAGCGGAATA 400
BSNT_01132___ 401 TTGATCCGAAGAAGTTTGACCCGAGAAGCATCCTCGGTACGATCAGCAGT 450
|.||||||||.||||||||.||||||||.||..|.||..|.||||||||.
RBAM_007010__ 401 TCGATCCGAAAAAGTTTGATCCGAGAAGTATTTTAGGCTCCATCAGCAGC 450
BSNT_01132___ 451 GCGAAAAACGAATTGACCGAACCGGAGGAATTCTCTAAAGTTGCTGGCGG 500
||.||||||||..|||.||||||.|||||||||.|.|||...||.|||||
RBAM_007010__ 451 GCAAAAAACGAGCTGATCGAACCTGAGGAATTCGCAAAAACGGCCGGCGG 500
BSNT_01132___ 501 CTACTACGATCAGGTGGTCAGCGATGTATATGCTGATTATCAGAAGAAGC 550
|||||||||||||||....||.||.||.|||.|.|||||||||||.||.|
RBAM_007010__ 501 CTACTACGATCAGGTCACGAGTGACGTGTATACCGATTATCAGAAAAAAC 550
BSNT_01132___ 551 TATTGAAAAACCAGTCGCTCGATTTTGACGATTTGATTATGACGACGATT 600
|..||||||||||.|||||.||||||||.|||||.||.||||||||||||
RBAM_007010__ 551 TGCTGAAAAACCAATCGCTTGATTTTGATGATTTAATCATGACGACGATT 600
BSNT_01132___ 601 AAACTGTTTGACCGAGTGCCTGAAGTGCTTGAATTTTATCAGCGCAAATT 650
||.||.||.||.||.|||||.|||||||||||.|||||||||||||||||
RBAM_007010__ 601 AAGCTTTTCGAGCGTGTGCCGGAAGTGCTTGAGTTTTATCAGCGCAAATT 650
BSNT_01132___ 651 CCAGTACATCCATGTTGATGAGTATCAGGATACGAACAGGGCGCAATACA 700
|||||||||.||.||.||.||||||||||||||||||||||||||||||.
RBAM_007010__ 651 CCAGTACATTCACGTAGACGAGTATCAGGATACGAACAGGGCGCAATACC 700
BSNT_01132___ 701 TGCTCGTTAAGCAGCTTGCCGAGCGTTTCCAGAACCTTTGCGTTGTCGGG 750
||||.||.|||||||||||.|..|||.|..|.||..|.|||||.|||||.
RBAM_007010__ 701 TGCTTGTGAAGCAGCTTGCGGCCCGTCTTGAAAATATCTGCGTCGTCGGT 750
BSNT_01132___ 751 GATTCTGATCAGTCAATCTACAGATGGCGCGGCGCGGATATCACCAACAT 800
||.||.||.|||||.||.||||||||||||||.|||||||||.|.||.||
RBAM_007010__ 751 GACTCCGACCAGTCCATTTACAGATGGCGCGGGGCGGATATCGCGAATAT 800
BSNT_01132___ 801 CCTTTCATTTGAAAAAGATTATCCGAATGCAAGCGTGATTTTGCTAGAAC 850
||||||.|||||||||||||||||||..||||.|||||||.||||.||.|
RBAM_007010__ 801 CCTTTCCTTTGAAAAAGATTATCCGAGCGCAAACGTGATTCTGCTCGAGC 850
BSNT_01132___ 851 AAAACTATCGTTCAACGAAACGGATTTTGCGTGCGGCTAACGAGGTCATC 900
|||||||.||.|||||.||.||||||.|||..|||||||||||.||.|||
RBAM_007010__ 851 AAAACTACCGCTCAACAAAGCGGATTCTGCAGGCGGCTAACGAAGTGATC 900
BSNT_01132___ 901 AAAAACAACTCTAACCGCAAACCGAAAAATTTGTGGACGGAAAACGATGA 950
|||||||||||.||||||||.||||||||..|||||||||||||.||.||
RBAM_007010__ 901 AAAAACAACTCAAACCGCAAGCCGAAAAACCTGTGGACGGAAAATGACGA 950
BSNT_01132___ 951 AGGCATAAAAATTTCCTATTATCGCGGTGATAATGAATTCGGAGAAGGAC 1000
||||||.||..||||.|||||..||||.||.|||||||||||.|||||.|
RBAM_007010__ 951 AGGCATCAAGCTTTCTTATTACAGCGGCGACAATGAATTCGGCGAAGGCC 1000
BSNT_01132___ 1001 AGTTTGTGGCCGGTAAAATTCATCAGCTTCACAGCTCAGGCAAGCGGAAG 1050
|.||.||.||.||.||||||.|..||||.||||||||.|||..|||||||
RBAM_007010__ 1001 AATTCGTCGCGGGCAAAATTTACGAGCTGCACAGCTCGGGCCGGCGGAAG 1050
BSNT_01132___ 1051 CTGTCTGATATCGCCATATTATACCGGACAAACGCGCAGTCCCGTGTGAT 1100
||.||.||||||||.||.|||||||||||||||||.|||||.||.||.||
RBAM_007010__ 1051 CTTTCCGATATCGCGATTTTATACCGGACAAACGCCCAGTCGCGCGTCAT 1100
BSNT_01132___ 1101 TGAGGAAACGCTTCTCAAAGCGGGCTTGAACTATAACATTGTCGGCGGCA 1150
|||||||||.|||.|.|||.|.||..|||||||.||.||.||||||||.|
RBAM_007010__ 1101 TGAGGAAACCCTTTTAAAATCCGGACTGAACTACAATATCGTCGGCGGAA 1150
BSNT_01132___ 1151 CAAAGTTCTATGACAGAAAAGAAATTAAAGACATTCTTGCGTACCTGCGC 1200
|.||||||||.|||||.||||||||||||||||||||.||.|||||||||
RBAM_007010__ 1151 CCAAGTTCTACGACAGGAAAGAAATTAAAGACATTCTCGCATACCTGCGC 1200
BSNT_01132___ 1201 CTCGTATCCAATCCGGATGACGATATCAGTTTCACGCGCATTGTCAATGT 1250
||.||.||.||.|||||.|||||.||||||||.|||||.||.||||||||
RBAM_007010__ 1201 CTTGTGTCAAACCCGGACGACGACATCAGTTTTACGCGGATCGTCAATGT 1250
BSNT_01132___ 1251 GCCGAAGCGCGGAGTCGGCGCGACATCACTTGAAAAAATCGCTTCGTATG 1300
|||||||||.||.||||||||.||.||.||.||||||||||||||.||||
RBAM_007010__ 1251 GCCGAAGCGGGGCGTCGGCGCCACTTCGCTAGAAAAAATCGCTTCATATG 1300
BSNT_01132___ 1301 CGGCCATAAACGGCTTGTCCTTTTTCCAAGCGATTCAGCAGGTTGATTTT 1350
||||.||.|||||..||||..|.|||||.|||||..|.|||||||||||.
RBAM_007010__ 1301 CGGCGATGAACGGAATGTCAATGTTCCAGGCGATCAAACAGGTTGATTTC 1350
BSNT_01132___ 1351 ATCGGCGTCAGTGCCAAAGCGGCAAACGCGCTTGACAGCTTTAGACAGAT 1400
|||||||||||.||.|||||||||||||||||||||.|||||.|...|||
RBAM_007010__ 1351 ATCGGCGTCAGCGCGAAAGCGGCAAACGCGCTTGACGGCTTTGGCGCGAT 1400
BSNT_01132___ 1401 GATTGAAAACCTGACCAATATGCAGGATTACTTATCCATTACAGAGCTGA 1450
|||||||||.|||||.||.||||||||||||.|.||||||||.||.||.|
RBAM_007010__ 1401 GATTGAAAATCTGACGAACATGCAGGATTACCTGTCCATTACGGAACTCA 1450
BSNT_01132___ 1451 CAGAAGAAATTCTTGATAAGACGGAATACAGAGAAATGCTGAAGGCTGAG 1500
|.|||||||||||.||.||.||||||||||||||||||||||||||.||.
RBAM_007010__ 1451 CGGAAGAAATTCTCGAGAAAACGGAATACAGAGAAATGCTGAAGGCCGAA 1500
BSNT_01132___ 1501 AAATCGATCGAAGCCCAAAGCCGTTTAGAAAATATCGACGAGTTCCTGTC 1550
|||||.||||||||||||||||||.|.|||||||||||||||||.||.||
RBAM_007010__ 1501 AAATCAATCGAAGCCCAAAGCCGTCTTGAAAATATCGACGAGTTTCTTTC 1550
BSNT_01132___ 1551 TGTTACGAAAAACTTTGAACAGAAAAGTGAAGACAAGACACTCGTTGCGT 1600
.||.|||||||||||.|||||.|||||.|||||||||.|.|||||.||||
RBAM_007010__ 1551 CGTGACGAAAAACTTCGAACAAAAAAGCGAAGACAAGTCTCTCGTCGCGT 1600
BSNT_01132___ 1601 TCCTGACAGACTTGGCATTGATCGCAGATATTGATCAGCTCGATCAGCAG 1650
|.|||||.||.|||||..||||.||.||||||||.||||||||.|||.||
RBAM_007010__ 1601 TTCTGACTGATTTGGCGCTGATTGCGGATATTGACCAGCTCGACCAGAAG 1650
BSNT_01132___ 1651 GAGGAAGAGTCAGGCGGCAAGGATGCGATCACCCTGATGACACTGCACGC 1700
||.||.||.||||||||.||||||||..||||..|.||||||||||||||
RBAM_007010__ 1651 GAAGAGGAATCAGGCGGAAAGGATGCCGTCACTTTAATGACACTGCACGC 1700
BSNT_01132___ 1701 CGCGAAAGGACTGGAGTTCCCGGTTGTTTTCTTGATGGGGCTTGAAGAAG 1750
|||.||.||.||.||.||.||.||.||.|||||.|||||..|.|||||||
RBAM_007010__ 1701 CGCTAAGGGGCTTGAATTTCCTGTCGTGTTCTTAATGGGCATGGAAGAAG 1750
BSNT_01132___ 1751 GCGTCTTCCCGCACAGCCGTTCACTCATGGAGGAAGCGGAAATGGAAGAA 1800
||||.||||||||||||||.||.||.|||||.|||||.||.|||||||||
RBAM_007010__ 1751 GCGTGTTCCCGCACAGCCGCTCCCTGATGGAAGAAGCCGAGATGGAAGAA 1800
BSNT_01132___ 1801 GAACGCCGCCTTGCGTACGTTGGGATTACAAGGGCTGAACAGGAGCTTTA 1850
||||||.|.||.||.||.||.||.|||||.|||||.|||.|.||..|.||
RBAM_007010__ 1801 GAACGCAGGCTCGCATATGTAGGCATTACGAGGGCGGAAGAAGAATTGTA 1850
BSNT_01132___ 1851 TCTGACCAATGCTAAAATGCGCACCTTGTTTGGCCGGACAAATATGAACC 1900
|.|.||.|||||.||||||||||||||.||.|||||.||.||||||||.|
RBAM_007010__ 1851 TTTAACGAATGCCAAAATGCGCACCTTATTCGGCCGCACCAATATGAATC 1900
BSNT_01132___ 1901 CGGAATCTCGCTTCATTGCTGAAATACCGGATGATTTATTGGAAAACCTA 1950
|||||||.|||||.||....||||||||.|..|||||||||||.||||||
RBAM_007010__ 1901 CGGAATCCCGCTTTATCAGGGAAATACCTGGCGATTTATTGGAGAACCTA 1950
BSNT_01132___ 1951 AATGAGAAAAAAGAAACGAGAGCGACGTC---TGC-------GAGAAAAA 1990
||||||||.| |||| ||.|| ||| .||||||.
RBAM_007010__ 1951 AATGAGAAGA---AAAC-------ACCTCGCATGCAGCCGGGAAGAAAAG 1990
BSNT_01132___ 1991 TGCAGCCGAGACGCGGCCCTGTTTCACGCCCCGTATCCTACGCCAGCAAA 2040
|||||||.|.||||||.||.||.||.||.|||||.|||||.||.|.||||
RBAM_007010__ 1991 TGCAGCCAAAACGCGGGCCCGTATCCCGTCCCGTTTCCTATGCGAACAAA 2040
BSNT_01132___ 2041 ACAGGCGGCGACACCTTAAACTGGGCAGTCGGAGATAAGGCGGGCCATAA 2090
||||||||||||.|..|.|.||||||.|||||.|||||.|||||||||||
RBAM_007010__ 2041 ACAGGCGGCGACTCGCTCAGCTGGGCGGTCGGCGATAAAGCGGGCCATAA 2090
BSNT_01132___ 2091 AAAATGGGGAACAGGAACTGTCGTCAGCGTGAAAGGCGAAGGAGAAGGGA 2140
|||||||||.||.|||||.||.||||||||.|||||.|||||.|||.|.|
RBAM_007010__ 2091 AAAATGGGGCACCGGAACGGTTGTCAGCGTAAAAGGAGAAGGCGAAAGCA 2140
BSNT_01132___ 2141 CGGAGCTCGATATTGCCTTCCCGAGCCCTGTTGGCGTGAAACGCCTGTTA 2190
|.|||||.|||||.||.|||||||||||.||.||||||||.||.|||.|.
RBAM_007010__ 2141 CCGAGCTTGATATCGCATTCCCGAGCCCAGTCGGCGTGAAGCGTCTGCTT 2190
BSNT_01132___ 2191 GCAGCATTTGCTCCTATTGAAAAGCAGTAA 2220
||.||.|||||.||.|||||||||||||||
RBAM_007010__ 2191 GCCGCTTTTGCGCCGATTGAAAAGCAGTAA 2220
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