Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_01099 and RBAM_006820

See Amino acid alignment / Visit BSNT_01099 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:47
# Commandline: needle
#    -asequence dna-align/BSNT_01099___yebE.1.9828.seq
#    -bsequence dna-align/RBAM_006820___yebE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01099___yebE-RBAM_006820___yebE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01099___yebE-RBAM_006820___yebE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01099___yebE
# 2: RBAM_006820___yebE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 556
# Identity:     450/556 (80.9%)
# Similarity:   450/556 (80.9%)
# Gaps:           2/556 ( 0.4%)
# Score: 1814.0
# 
#
#=======================================

BSNT_01099___      1 ATGATGCAAACCATCTTATCAAATGGGATAGCCATGGTTCTCATAATTCT     50
                     ||||||||.||.||.|||||.||..|.||||..|||||||||||.|||||
RBAM_006820__      1 ATGATGCAGACGATTTTATCCAACAGTATAGGTATGGTTCTCATTATTCT     50

BSNT_01099___     51 CATTATTAATATTGTCTATGTGTCATTTTTTACGATAAGAATGATTTTAA    100
                     |||.|||||.|||.|.|||||.||.||.||||||||.||.||||||.|.|
RBAM_006820__     51 CATCATTAACATTATATATGTCTCTTTCTTTACGATCAGGATGATTCTGA    100

BSNT_01099___    101 CGCTGAAAGGACAGCGTTATTTAGCGGCCGGCATCAGTACGATTGAAATA    150
                     |..|.||.||||||||.|||||.||.||.||||||||||||||||||||.
RBAM_006820__    101 CATTAAAGGGACAGCGCTATTTCGCCGCGGGCATCAGTACGATTGAAATC    150

BSNT_01099___    151 CTGGTTTATGTGACGGGGCTGAGTCTGGTGCTCGATAA-CTTAGACCAGA    199
                     ||.||.||||||||.||.||||||||.|||||||..|| ||.| |.||.|
RBAM_006820__    151 CTTGTGTATGTGACCGGCCTGAGTCTCGTGCTCGGCAATCTGA-ATCAAA    199

BSNT_01099___    200 TTCAAAATGTGATCGCGTACGCGCTCGGTTACGGTCTTGGCGTAATTGTC    249
                     |||||||.||.||.||.||.||.|||||.|||||.||.|||||.||.||.
RBAM_006820__    200 TTCAAAACGTCATTGCCTATGCACTCGGCTACGGCCTCGGCGTCATAGTG    249

BSNT_01099___    250 GGCATGAAAATAGAAGAAAAATTGGCGCTTGGCTATATTATGGTCAATGT    299
                     ||.||||||||.|||||||||.|||||||.||||||||||..|||||.||
RBAM_006820__    250 GGAATGAAAATTGAAGAAAAACTGGCGCTCGGCTATATTACAGTCAACGT    299

BSNT_01099___    300 GATTACGAAGGAGCTCGATCTTGATCTTCCGAAGCAGCTCCGTGAAAAAG    349
                     .||||||||||||||||||||.||.||.|||||.||||||||.|||||||
RBAM_006820__    300 CATTACGAAGGAGCTCGATCTGGACCTGCCGAAACAGCTCCGGGAAAAAG    349

BSNT_01099___    350 GCTACGGCGTGACAAATTGGGTGGCAGGCGGGCTTGAAGGCGACCGCACA    399
                     |.|||||.||.||||..|||||.||.|||||.||||||||.|||||.||.
RBAM_006820__    350 GATACGGGGTTACAAGCTGGGTTGCGGGCGGACTTGAAGGAGACCGGACC    399

BSNT_01099___    400 GCCCTTCAGATCCTGACGCCGAGAAGATATGAACTCCAGCTATATGATAC    449
                     |||.|.|||||.|||||.|||.|.|.||||||.||.|||||.||||||||
RBAM_006820__    400 GCCATGCAGATACTGACACCGCGCAAATATGAGCTTCAGCTTTATGATAC    449

BSNT_01099___    450 GATTAAAACACTTGATTCAAAAGCCTTTATTATTGCGTACGAACCAAAAA    499
                     |||||||||.||||||..||||||.|||||.||.||.|..||.||.||||
RBAM_006820__    450 GATTAAAACGCTTGATGAAAAAGCGTTTATGATCGCCTTTGAGCCGAAAA    499

BSNT_01099___    500 CAATCCACGGCGGCTTCTGGGTCAAAGCGGTGAAGAAGAGGAGAATTAAA    549
                     |.|||||.|||||.||||||||.|||||.||||||||||||||||||||.
RBAM_006820__    500 CGATCCATGGCGGATTCTGGGTGAAAGCAGTGAAGAAGAGGAGAATTAAG    549

BSNT_01099___    550 GAATAA    555
                     ||||.|
RBAM_006820__    550 GAATGA    555


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.