Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01086 and RBAM_006720

See Amino acid alignment / Visit BSNT_01086 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:46
# Commandline: needle
#    -asequence dna-align/BSNT_01086___yeaB.1.9828.seq
#    -bsequence dna-align/RBAM_006720___yeaB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01086___yeaB-RBAM_006720___yeaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01086___yeaB-RBAM_006720___yeaB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01086___yeaB
# 2: RBAM_006720___yeaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 882
# Identity:     676/882 (76.6%)
# Similarity:   676/882 (76.6%)
# Gaps:          18/882 ( 2.0%)
# Score: 2562.0
# 
#
#=======================================

BSNT_01086___      1 ATGGAGAGATATGATGAATTGAAAAAGGGTGAATCCGGGGCGCTGGTCAG     50
                     .|||||||||||.|||||||||||||.||.|||.||||.|||.|.|||||
RBAM_006720__      1 GTGGAGAGATATCATGAATTGAAAAAAGGCGAAACCGGAGCGATTGTCAG     50

BSNT_01086___     51 CATTGCCGCGTAT-----CTTGTTCTTTCCGCAATTAAACTGATCATCGG     95
                     .||||.|||.|||     .|||     ||.|...|.||.||..|.|||||
RBAM_006720__     51 TATTGGCGCATATGCGGCATTG-----TCGGTTGTGAAGCTTGTGATCGG     95

BSNT_01086___     96 TTATCTTTTTCACTCGGAAGCACTTACGGCAGACGGGTTAAATAACACAA    145
                     ||||.|.||||||||.|||||.|||..|||.|||||.||||||||.||.|
RBAM_006720__     96 TTATTTGTTTCACTCAGAAGCGCTTCAGGCCGACGGTTTAAATAATACGA    145

BSNT_01086___    146 CTGACATTATTGCTTCTGCTGCTGTGCTGATTGGCCTGCGCATCTCTCAA    195
                     ||||.||..|.||.|||||.|||||..|.||.||..|||||||||||||.
RBAM_006720__    146 CTGATATCGTGGCATCTGCGGCTGTTTTCATCGGTTTGCGCATCTCTCAG    195

BSNT_01086___    196 AAGCCTCCTGACGAAGATCATCCATACGGCCACTTCCGAGCGGAAACGAT    245
                     ||.||||||||||||||||||||.||||||||.||.||.||.||.||..|
RBAM_006720__    196 AAACCTCCTGACGAAGATCATCCTTACGGCCATTTTCGGGCAGAGACCGT    245

BSNT_01086___    246 TGCATCGCTTATCGCATCGTTTATTATGATGGTTGTCGGACTGCAAGTGC    295
                     .||.||.||.|||||.||..|||||||||||.||||||||.|||||||||
RBAM_006720__    246 CGCGTCACTCATCGCTTCCATTATTATGATGCTTGTCGGAATGCAAGTGC    295

BSNT_01086___    296 TGTTCAGCGCCGGAGAATCTATTTTTTCTGCTAAACAAGAGACGCCGGAT    345
                     ||||||||||||...|||||||||||||.|.||||.|.||.||.||||||
RBAM_006720__    296 TGTTCAGCGCCGCGCAATCTATTTTTTCCGTTAAAGAGGAAACACCGGAT    345

BSNT_01086___    346 ATGATTGCGGCTTGGACGGCAGCGGGCGGGGCAGTCCTGATGCTGATCGT    395
                     |||||.||.||.||||||||.|||||..|.||.|||.||||||||||.||
RBAM_006720__    346 ATGATAGCCGCCTGGACGGCCGCGGGGAGCGCCGTCGTGATGCTGATGGT    395

BSNT_01086___    396 TTATCGGTACAATAAAAGGCTGGCCAAAAAGGTGAAGAGCCAGGCGCTCC    445
                     .||.||.||.|..|||.||||.|||||||||||.||.||||||||   ||
RBAM_006720__    396 CTACCGCTATACGAAAGGGCTTGCCAAAAAGGTAAACAGCCAGGC---CC    442

BSNT_01086___    446 TT---GCTGCGGCTGCTGATAATAAATCAGACGCATTGGTCAGTATCGGC    492
                     ||   ||||||||.|||||||||||||||||.||..|.||||||||||||
RBAM_006720__    443 TTTCAGCTGCGGCAGCTGATAATAAATCAGATGCGCTCGTCAGTATCGGC    492

BSNT_01086___    493 ACGTTTATCGGCATTGTGGCTGCTCAATTCCATCTTGCTTGGATTGATAC    542
                     |||||||||||.|||.|.|||.|.||.||||||.|.||||||.|||||||
RBAM_006720__    493 ACGTTTATCGGAATTTTTGCTTCACAGTTCCATTTGGCTTGGGTTGATAC    542

BSNT_01086___    543 GGTCACTGCGTTTGTGATCGGCCTGCTTATTTGCAAGACCGCATGGGATA    592
                     |||.||.||||||.|.|||||..||.|.||.|||||.|||||.|||||||
RBAM_006720__    543 GGTTACCGCGTTTATCATCGGGTTGATCATATGCAAAACCGCGTGGGATA    592

BSNT_01086___    593 TTTTTAAAGAATCATCTCACTCTTTGACAGATGGATTCGA-CACAAAGGA    641
                     |||||||.|||||.|||||.||..||||.||.||.||.|| ..|||| .|
RBAM_006720__    593 TTTTTAAGGAATCCTCTCATTCGCTGACTGACGGTTTTGATGTCAAA-CA    641

BSNT_01086___    642 CATTTCCGCTTATAAACAGACAATCGAAAAAATCTCCGGTGTGAGCCGTT    691
                     .|||||.|.|||||||.||||.||.|||.|.||..|.||.||.|||||||
RBAM_006720__    642 TATTTCTGATTATAAAAAGACGATTGAACAGATTGCGGGCGTCAGCCGTT    691

BSNT_01086___    692 TAAAAGACATAAAAGCAAGATACTTGGGCAGTACGGTTCATGTTGATGTG    741
                     |||||||.||.|||||.|||||..|||||||..|.||||||.|||||||.
RBAM_006720__    692 TAAAAGATATTAAAGCGAGATATCTGGGCAGCTCCGTTCATATTGATGTC    741

BSNT_01086___    742 GTGGTTGAGGTATCGGCAGATTTAAATATTACGGAAAGCCACGATATAGC    791
                     ||..||||.||..||.|||||.|.||.||||..||.||.||.||.||.||
RBAM_006720__    742 GTCATTGAAGTGCCGTCAGATCTGAACATTAAAGAGAGTCATGAGATCGC    791

BSNT_01086___    792 CAATGAAATTGAGCGGAGAATGAAGGAGGAGCATGCGATTGATTATTCGC    841
                     .|||||..|.||.||.|..|||||.|||||.|||||.|||||..||||.|
RBAM_006720__    792 AAATGAGGTAGAACGCAAGATGAAAGAGGAACATGCCATTGACCATTCAC    841

BSNT_01086___    842 ATGTTCATATGGAGCCTTTAGAACACAAATAA    873
                     |.|||||||||||||||.|..|.|..||||||
RBAM_006720__    842 ACGTTCATATGGAGCCTCTCCAGCTGAAATAA    873


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