Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01056 and RBAM_006550

See Amino acid alignment / Visit BSNT_01056 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:44
# Commandline: needle
#    -asequence dna-align/BSNT_01056___gutP.1.9828.seq
#    -bsequence dna-align/RBAM_006550___gutA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01056___gutP-RBAM_006550___gutA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01056___gutP-RBAM_006550___gutA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01056___gutP
# 2: RBAM_006550___gutA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1399
# Identity:    1191/1399 (85.1%)
# Similarity:  1191/1399 (85.1%)
# Gaps:          29/1399 ( 2.1%)
# Score: 5139.0
# 
#
#=======================================

BSNT_01056___      1 ATGATTGAAACAGAAAAAGTAACGGCAATGAAAG-TGAAGCATCAGTCAA     49
                     |||||||||||||||||||.|.|||||.| |||| .|||..|||      
RBAM_006550__      1 ATGATTGAAACAGAAAAAGCAGCGGCAGT-AAAGACGAAATATC------     43

BSNT_01056___     50 AATCCAGTACCGGACTGTCCTGGTTTGAACGAATCGGTTATGGATTCGGC     99
                              .|||.|||||||||.|.|||||..||||.||.|||||||||
RBAM_006550__     44 ---------GCGGCCTGTCCTGGATGGAACGGGTCGGCTACGGATTCGGC     84

BSNT_01056___    100 GATATGTCGTATAATATTATCTTTCAGTTTGTAAACGCATACTTATTATT    149
                     |||||||||||.||||||||||||||||||||||||||||||||||||||
RBAM_006550__     85 GATATGTCGTACAATATTATCTTTCAGTTTGTAAACGCATACTTATTATT    134

BSNT_01056___    150 TTATTATACAGACGTCGGCGGCATTCAGCCTGCGGTGATCGCAACTTTGT    199
                     .||.|||||||||||||||||||||.||||||||||.||||||.||||||
RBAM_006550__    135 CTACTATACAGACGTCGGCGGCATTAAGCCTGCGGTCATCGCAGCTTTGT    184

BSNT_01056___    200 TTCTTGTTGTGCGTGTGCTGGATGCTATTTTTGACCCGATCATGGGATTG    249
                     |||||.|.||..|.||||||||.|||||||||||||||||.|||||..||
RBAM_006550__    185 TTCTTATCGTAAGGGTGCTGGACGCTATTTTTGACCCGATTATGGGCGTG    234

BSNT_01056___    250 ATTTTAGATAAAACAAATACAAGGTGGGGAAAAGCAAGGCCATATTTGCT    299
                     ||||||||.||.||.||||||||.||||||||.||||||||.|||.|..|
RBAM_006550__    235 ATTTTAGACAAGACGAATACAAGATGGGGAAAGGCAAGGCCGTATCTTTT    284

BSNT_01056___    300 GTGGGTGGCATTTCCTTTTGCGCTATTCACATTCTTATGTTTTACGACGC    349
                     |||||||||.|||||||||||||||||.||.||||||||.||.|||||.|
RBAM_006550__    285 GTGGGTGGCGTTTCCTTTTGCGCTATTTACGTTCTTATGCTTCACGACCC    334

BSNT_01056___    350 CTCATTTCGGTGAGACCGGAAATATGGTATATGCGTATGTCACTTATATT    399
                     ||||||||||.|||||.||.||||||||.||||||||..|||||||||||
RBAM_006550__    335 CTCATTTCGGCGAGACGGGGAATATGGTTTATGCGTACATCACTTATATT    384

BSNT_01056___    400 CTGCTTGGGATGTCCTTTAGTATGCAAACGATCCCGGTGAACAGCTTAAC    449
                     |||||||||||||||||.||.|||||.|||||.|||||.|||||||||||
RBAM_006550__    385 CTGCTTGGGATGTCCTTCAGCATGCAGACGATTCCGGTCAACAGCTTAAC    434

BSNT_01056___    450 GGGGCGGATGACGAATTCGGTGGAGGAACGGACGGTTCTGACCACAACCC    499
                     ||||||||||||||||||.|||||||||||||||||||||||.||.||||
RBAM_006550__    435 GGGGCGGATGACGAATTCCGTGGAGGAACGGACGGTTCTGACGACGACCC    484

BSNT_01056___    500 GGATGATTTTGGTGTATATCGGCATTCTTTTATCCATTTCCTGTGCGACA    549
                     |||||||||||||.||||||||.|||||.|||||.|||||||||||||||
RBAM_006550__    485 GGATGATTTTGGTTTATATCGGAATTCTGTTATCGATTTCCTGTGCGACA    534

BSNT_01056___    550 CCGCTTGC-AACTGCTATCGGAGGAGAGA-ATCAGGCGTTTGGGTTTCAA    597
                     |||||||| .|| ||.|||||.|| ||.| |||||||||||||.||.|||
RBAM_006550__    535 CCGCTTGCGGAC-GCCATCGGCGG-GAAAGATCAGGCGTTTGGATTCCAA    582

BSNT_01056___    598 ATGACGGCGCTCATCTATGCGGCTGTCAGCATCGTTTTGAATCTATTTAG    647
                     |||||||||||.|||||||||||.||.|||||||..||||||||.||.||
RBAM_006550__    583 ATGACGGCGCTTATCTATGCGGCGGTGAGCATCGCATTGAATCTGTTCAG    632

BSNT_01056___    648 TTTCTTTACTGTACGGGAGCGAATTCAGCCTAAAAAGAGAAAAAAACAAG    697
                     ||||||||||||.|||||.||.|||||||||.||||.|||||||||||||
RBAM_006550__    633 TTTCTTTACTGTGCGGGAACGGATTCAGCCTGAAAAAAGAAAAAAACAAG    682

BSNT_01056___    698 GGATCAAAAAGACATTATCCGTTTTATTCCAAAACAAACCCTTGCTTATG    747
                     |.||.||||||||.||.||.|||||.||||.||||||.||.|||||.||.
RBAM_006550__    683 GAATGAAAAAGACGTTGTCTGTTTTGTTCCGAAACAAGCCTTTGCTCATT    732

BSNT_01056___    748 TTAATTTCATCCTTTTTGGCTTTTGCGATCGGGTTTAATATTAAGCTCAG    797
                     ||..||||..|.||||||||.||||||||.||||||||.|||||||||||
RBAM_006550__    733 TTGGTTTCTGCATTTTTGGCGTTTGCGATTGGGTTTAACATTAAGCTCAG    782

BSNT_01056___    798 CACGATGGTGTATTATTTTACGTATAACGTCAACCATAAAGAGTTCGTAT    847
                     .|||||||||||.|||||||||||||||||||.||||||.||.||.||.|
RBAM_006550__    783 TACGATGGTGTACTATTTTACGTATAACGTCAGCCATAAGGAATTTGTGT    832

BSNT_01056___    848 TTATGGGCACCGTTTTATTTTTCGGAGCAGCGCTGATCAGCAATTTGTTT    897
                     ||.|.||.|||||.||.||||||||.||||||||||||||||||.|||||
RBAM_006550__    833 TTTTAGGAACCGTGTTGTTTTTCGGCGCAGCGCTGATCAGCAATCTGTTT    882

BSNT_01056___    898 ATTCCTTTCTTTTCTGAGAAGTGGGGCAGAAAACAAGTCATGATCATCAC    947
                     |||||||||||||||||||||.|||||.|.||.||.||.|||||||||||
RBAM_006550__    883 ATTCCTTTCTTTTCTGAGAAGCGGGGCCGGAAGCAGGTTATGATCATCAC    932

BSNT_01056___    948 GGCAGCTCTATCGCTTATTTCTTATGCCGGCCTGCATTTTACGCCGTATT    997
                     |||.||..|||||||.|||||||||||.|||||.||.|||||..||||||
RBAM_006550__    933 GGCGGCGTTATCGCTGATTTCTTATGCGGGCCTTCAGTTTACATCGTATT    982

BSNT_01056___    998 CTTCCATTACACTCATTTTCATTTGGCTTTTCGTTTCGGGATTTTTCACA   1047
                     ||||..|..|.||.||||||.||||||||||||||||||||||||||||.
RBAM_006550__    983 CTTCGCTGCCGCTTATTTTCTTTTGGCTTTTCGTTTCGGGATTTTTCACG   1032

BSNT_01056___   1048 ACGCCTTTAAATACGCTTGCTTGGGGAATGGTGGCTGATTGCGTCGATTA   1097
                     ||||||||||||||||||||||||||||||||.||.|||||.||||||||
RBAM_006550__   1033 ACGCCTTTAAATACGCTTGCTTGGGGAATGGTTGCCGATTGTGTCGATTA   1082

BSNT_01056___   1098 TGCGGAATGGAAAACCGGAGTTCGCGCGGATGGTGTTGTGATTTCGAGCA   1147
                     |||||||||||||||||||||.||.||.|||||.||.|||||.|||||||
RBAM_006550__   1083 TGCGGAATGGAAAACCGGAGTCCGGGCTGATGGCGTGGTGATCTCGAGCA   1132

BSNT_01056___   1148 TGAGCTTTATTAATAAGCTGGGTGTTGCGTTAGCCGGGTCATTTTCGGCC   1197
                     ||||.||.||.||||||||.||.|||||||||||||||||||||||||||
RBAM_006550__   1133 TGAGTTTCATCAATAAGCTCGGAGTTGCGTTAGCCGGGTCATTTTCGGCC   1182

BSNT_01056___   1198 ATTTACTTAGGAATCGCCGGGTATGTGGCGAATACAGACCAGACAGTTG-   1246
                     .||||..|.|||||||||||.||||..||||||||.||.|||||    | 
RBAM_006550__   1183 GTTTATCTCGGAATCGCCGGATATGCCGCGAATACCGATCAGAC----GA   1228

BSNT_01056___   1247 ---CGTCATTGAATGCGATTAAAAATATGAATGCTTTGATTCCGGGATTT   1293
                        |||||||||||||||||||||||||||||||..|.|||||||||||.
RBAM_006550__   1229 CCTCGTCATTGAATGCGATTAAAAATATGAATGCGCTCATTCCGGGATTG   1278

BSNT_01056___   1294 TTCATTTTGCTTTCTATTATTCTTATCGCCTTCTATCCTTTAACGGAAAA   1343
                     ||||||.||||.||||||||||||||..|.||.|||||||||||.|||||
RBAM_006550__   1279 TTCATTCTGCTGTCTATTATTCTTATTTCTTTTTATCCTTTAACTGAAAA   1328

BSNT_01056___   1344 AAGATATAAACACATCATCTCTGAGCTGGAGCAAAGGTCTGCGAGATAA   1392
                     ||.||||.|.||.||.||.|||||.||||||||||||.||||.||||||
RBAM_006550__   1329 AAAATATCAGCAGATGATGTCTGATCTGGAGCAAAGGGCTGCCAGATAA   1377


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