Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01038 and RBAM_006410

See Amino acid alignment / Visit BSNT_01038 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:42
# Commandline: needle
#    -asequence dna-align/BSNT_01038___moaC.1.9828.seq
#    -bsequence dna-align/RBAM_006410___moaC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01038___moaC-RBAM_006410___moaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01038___moaC-RBAM_006410___moaC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01038___moaC
# 2: RBAM_006410___moaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 554
# Identity:     417/554 (75.3%)
# Similarity:   417/554 (75.3%)
# Gaps:          52/554 ( 9.4%)
# Score: 1667.5
# 
#
#=======================================

BSNT_01038___      1 GTGTATGATCTGTTTAAGGAGCGTTTTAATATGAATGGATTTTCTCATTT     50
                                                   ||||||||||||||||||||
RBAM_006410__      1 ------------------------------ATGAATGGATTTTCTCATTT     20

BSNT_01038___     51 TAATGAACAGGGCAGAGCCCAGATGGTGGATATTAGCGAAAAATCTTCGA    100
                     |||||||.|.|||.|.||||..|||||||||||.|||||.||||||||.|
RBAM_006410__     21 TAATGAAGAAGGCCGTGCCCGCATGGTGGATATAAGCGATAAATCTTCAA     70

BSNT_01038___    101 CTGTCCGTACTGCGGCGGCTGTTTCAAGCGTACACATGAAGAATGAGGTG    150
                     |.|||||||||||.||.||..|.||.|||||||||||||||.||||.|||
RBAM_006410__     71 CAGTCCGTACTGCCGCTGCGATATCCAGCGTACACATGAAGCATGACGTG    120

BSNT_01038___    151 TACGAGAAAATACAGAGTCA-------TGATATCGGCAAAGGAGATGTAC    193
                     ||| ||      ||||.|||       .||.|||||.||||||||.||.|
RBAM_006410__    121 TAC-AG------CAGAATCAAAAACCGCGAGATCGGAAAAGGAGACGTGC    163

BSNT_01038___    194 TGGCTGTCGCACAGGTGGCAGGCATTATGGCCGCAAAGCAAACGT---CG    240
                     |||||||||||||||||||.||.|||||||||||||||||.||||   ||
RBAM_006410__    164 TGGCTGTCGCACAGGTGGCCGGAATTATGGCCGCAAAGCAGACGTCAGCG    213

BSNT_01038___    241 AATATCATTCCGATGTGCCATCCGCTTTCATTGAGCGGGGTAGATATATC    290
                     |.||||   |||||||||||.||||||||.||.|||.|.||.||.||.||
RBAM_006410__    214 ATTATC---CCGATGTGCCACCCGCTTTCTTTAAGCAGCGTTGACATTTC    260

BSNT_01038___    291 GTTTGACTGGAAAATAAAAGAAGCAGAAGTTATACTTCATATAAAAGCAC    340
                     .||.|.||||.|...|||.||..|.||||...|.|||||||||.|.||| 
RBAM_006410__    261 ATTCGGCTGGGAGGAAAAGGATTCCGAAGCCGTTCTTCATATACAGGCA-    309

BSNT_01038___    341 AG-GTCAAAACGAAAGGGAGTACAGGTGTGGAAATGGAAGCGCTCACTTC    389
                     || ||.||||||||||||||||||||||||||||||||||||||.|||||
RBAM_006410__    310 AGCGTAAAAACGAAAGGGAGTACAGGTGTGGAAATGGAAGCGCTAACTTC    359

BSNT_01038___    390 TGCATCGGTGTGCGCTCTTACCGTTTACGATATGTGCAAGGCCCTTGATA    439
                     .||.||.||.||||||.|.||||||||.||.|||||||||||.||.||||
RBAM_006410__    360 CGCTTCAGTCTGCGCTTTGACCGTTTATGACATGTGCAAGGCGCTGGATA    409

BSNT_01038___    440 AGGGGATGGTCATCGGCCCTACTTTCTTGCTGGAGAAGACAGGCGGGAAA    489
                     |.||.||||||||||||||.||.|.|.|..||||.||||||||.||.|||
RBAM_006410__    410 AAGGAATGGTCATCGGCCCGACCTGCCTCATGGAAAAGACAGGAGGCAAA    459

BSNT_01038___    490 AACGGTGACTTTAAAAGAGAACTATCCGAGTATAATTTGGAGGACCAAAA    539
                     ||||||||.|||||||||||...|||.||||||||..|||||||||||..
RBAM_006410__    460 AACGGTGATTTTAAAAGAGATGCATCTGAGTATAAAGTGGAGGACCAATC    509

BSNT_01038___    540 ATGA    543
                     ||||
RBAM_006410__    510 ATGA    513


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