Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01036 and RBAM_006390
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence dna-align/BSNT_01036___gcp.1.9828.seq
# -bsequence dna-align/RBAM_006390___gcp.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01036___gcp-RBAM_006390___gcp.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01036___gcp-RBAM_006390___gcp.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01036___gcp
# 2: RBAM_006390___gcp
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1068
# Identity: 786/1068 (73.6%)
# Similarity: 786/1068 (73.6%)
# Gaps: 54/1068 ( 5.1%)
# Score: 2810.5
#
#
#=======================================
BSNT_01036___ 1 ATGAGTGAGCAAAAAGACATGTACGTATTAGGAATTGAAACAAGCTGTGA 50
||||||||..||.||||.||.||.|||||||||||.||||||||||||||
RBAM_006390__ 1 ATGAGTGAAAAACAAGATATTTATGTATTAGGAATCGAAACAAGCTGTGA 50
BSNT_01036___ 51 TGAGACTGCTGCAGCTATTGTGAAAAACGGGAAAGAGATCATTTCAAACG 100
|||.||.||.||..|..|.||.|||||||||||.||.||.||||||||||
RBAM_006390__ 51 TGAAACAGCGGCCTCGGTCGTAAAAAACGGGAATGAAATTATTTCAAACG 100
BSNT_01036___ 101 TAGTAGCCTCTCAAATTGAAAGCCATAAGCGCTTCGGAGGCGTTGTTCCG 150
|.||.||.||||||||||||||||||||.||.|||||.||.||.||.||.
RBAM_006390__ 101 TTGTCGCTTCTCAAATTGAAAGCCATAAACGTTTCGGCGGGGTCGTGCCT 150
BSNT_01036___ 151 GAAATTGCTTCAAGACATCATGTTGAACAAATCACTTTGGTTATAGAAGA 200
|||||.||.||.|||||||||||.||.||.||.||..|.||.||.||.||
RBAM_006390__ 151 GAAATAGCGTCCAGACATCATGTGGAGCAGATTACCCTTGTGATTGAGGA 200
BSNT_01036___ 201 GGCGTTTCGCAAAGCTGGCATGACGTATAGTGATATTGATGCGATTGCAG 250
.||..||...|||||.|..|||...|.|..|||..|||||||||||||.|
RBAM_006390__ 201 AGCTCTTTTAAAAGCGGAGATGGGCTTTGATGAACTTGATGCGATTGCCG 250
BSNT_01036___ 251 TAACAGAAGGTCCGGGACTGGTGGGGGCGCTTCTTATTGGAGTGAATGCC 300
||||.|||||.||.|||||.||.||.||.||..|.||.|||||.|||||.
RBAM_006390__ 251 TAACGGAAGGACCCGGACTTGTCGGAGCCCTGTTAATCGGAGTCAATGCG 300
BSNT_01036___ 301 GCTAAAGCATTGAGCTTTGCACATAACATTCCGTTAGTAGGCGTTCATCA 350
||.||.||.||.||||||||.|||.|.||.|||.||||.||.||.|||||
RBAM_006390__ 301 GCAAAGGCGTTAAGCTTTGCCCATCAAATACCGCTAGTCGGTGTCCATCA 350
BSNT_01036___ 351 TATAGCCGGTCATATATACGCGAACCGTCTTGTAGAAGA-CATCGTGTTC 399
.||.||.||||||||.||.||.|||.|.||..|||.||| |.|| ..|||
RBAM_006390__ 351 CATTGCGGGTCATATTTATGCAAACAGGCTGATAGGAGAGCTTC-AATTC 399
BSNT_01036___ 400 CCGGCACTGGCATTGGTCGTTTCAGGAGGCCATACAGAACTGGTTTATAT 449
|||||.||.||.|||||.||.|||||.||.|||||.|||.||||||||||
RBAM_006390__ 400 CCGGCGCTTGCTTTGGTTGTGTCAGGCGGACATACGGAATTGGTTTATAT 449
BSNT_01036___ 450 GAAGGAACATGGATCATTTGAAGTCATTGGGGAAACCCTTGATGATGCGG 499
|||.||.|||||.|||||.||.||.||.||.|||||.||.||||||||.|
RBAM_006390__ 450 GAAAGAGCATGGTTCATTCGAGGTTATCGGTGAAACGCTGGATGATGCCG 499
BSNT_01036___ 500 CAGGAGAAGCCTACGACAAAGTGGCGCGGACGATGGGATTGCCATATCCG 549
||||.|||||.||||||||||||||..|.||||||||..|.||.||||||
RBAM_006390__ 500 CAGGCGAAGCTTACGACAAAGTGGCAAGAACGATGGGGCTTCCTTATCCG 549
BSNT_01036___ 550 GGTGGACCGCAAATTGACAAGCTAGCTGAAAAA----GGGAATGACAAT- 594
||.||.|||||.|||||.|||||.|||| |||||.| .||
RBAM_006390__ 550 GGAGGGCCGCAGATTGATAAGCTGGCTG-----CTGTGGGAACG--GATT 592
BSNT_01036___ 595 --ATTCCGCTTCCTCGCGCATGGCTTGAAGAAGGCTCTTACAACTTCAGC 642
|||||||||||.||.||.|||||.||||||||.||||||||.||||||
RBAM_006390__ 593 CCATTCCGCTTCCGCGTGCGTGGCTGGAAGAAGGGTCTTACAATTTCAGC 642
BSNT_01036___ 643 TTTAGCGGATTGAAGTCTGCGGTGATCAATACGCTTCATAATGCATCCCA 692
||.|||||..|||||||.||.|||||.||.|||||||||||.||.||.||
RBAM_006390__ 643 TTCAGCGGCCTGAAGTCAGCTGTGATTAACACGCTTCATAACGCCTCGCA 692
BSNT_01036___ 693 AAAAGGGCAA----GAGATTGCTCCGGAAGAT-TTGTCTGCCAGTTTCCA 737
|||| || |.||||.|||||||.||| ||| |.||.||.||.||
RBAM_006390__ 693 AAAA----AATGAGGTGATTCCTCCGGAGGATCTTG-CCGCAAGCTTTCA 737
BSNT_01036___ 738 AAATAGTGTGATCGATGTCTTGGTAACCAAAAC------GGCGCGCGCGG 781
..|.|||||.||.|||||..||....|.||||| ||| ||||
RBAM_006390__ 738 GCAGAGTGTCATTGATGTACTGACGGCAAAAACCTCTAAGGC---CGCG- 783
BSNT_01036___ 782 CAAAGGAATATGATGTCAAACAGGTCCTTTTAGCCGGAGGAGTAGCTGCA 831
||.|||||.|..||.|||||.||.||..|.||.||.||.|||||.||.
RBAM_006390__ 784 --AAAGAATACGGGGTTAAACAAGTGCTGCTGGCAGGGGGCGTAGCCGCT 831
BSNT_01036___ 832 AACAGAGGCCTCAGAGCTGCATTAGAAAAGGAATTTGCCCAG-CATGAAG 880
||||.|||.||.|||||.|||.|..|..||||||| ||| |||...|
RBAM_006390__ 832 AACAAAGGGCTGAGAGCCGCACTGCAGCAGGAATT----CAGCCATTCGG 877
BSNT_01036___ 881 G-GATTAC--GCTTGTCATTCCTCCATTAGCT----TTATGCACGGATAA 923
| |||..| |||||||||.||.|| ||| |||||.|||||.||
RBAM_006390__ 878 GAGATCCCGAGCTTGTCATCCCGCC----GCTTTCCTTATGTACGGACAA 923
BSNT_01036___ 924 TGCTGCGATGATTGCTGCTGCTGGTACAATTGCTTTTGAAAAAGGAATTC 973
|||.|||||||||||.|||||.||.||..|||||||||||||.||.||||
RBAM_006390__ 924 TGCAGCGATGATTGCGGCTGCCGGAACCGTTGCTTTTGAAAAGGGGATTC 973
BSNT_01036___ 974 GCGGTGCATATGATATGAATGGCCAGCCCGGCCTTGAATTGACTTCTTAT 1023
|.||..|||||||||||||.||.||||||||..|.|||||.||.||||.|
RBAM_006390__ 974 GGGGCTCATATGATATGAACGGACAGCCCGGTTTGGAATTAACATCTTTT 1023
BSNT_01036___ 1024 CAAAGTCTCACGAGATAA 1041
.|..||||||||...|||
RBAM_006390__ 1024 GATCGTCTCACGTTGTAA 1041
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