Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02068 and RBAM_006070
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:46
# Commandline: needle
# -asequence dna-align/BSNT_02068.1.9828.seq
# -bsequence dna-align/RBAM_006070___yjhB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02068-RBAM_006070___yjhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02068-RBAM_006070___yjhB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02068
# 2: RBAM_006070___yjhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 671
# Identity: 407/671 (60.7%)
# Similarity: 407/671 (60.7%)
# Gaps: 106/671 (15.8%)
# Score: 962.0
#
#
#=======================================
BSNT_02068 1 ---GTGCAAACCAAATGGCTGGAACGGGCACAGCGGATTCAA---GCGAT 44
|.|| |.||||||||.||..|||||.|.|.|.||||| |||
RBAM_006070__ 1 ATGGAGC---CAAAATGGCTAGATTGGGCAAAACAGCTTCAATCCGCG-- 45
BSNT_02068 45 TGCACAGGCTGGGCTTGCTTTTTCCAAGGATGTGTACGACAGGGAGAGGT 94
||.||.||.|||||.||||.||||||.||..|.||.||.|..|||||.|
RBAM_006070__ 46 -GCGCAAGCGGGGCTGGCTTATTCCAAAGACATATATGATATTGAGAGAT 94
BSNT_02068 95 ACGAAGAGCTAATGAAGCTCAGTGCAGAAATGATGGTGGAT--TAC--TC 140
..|||||..|||..||..|.||.|..||.||.||||.|.|| ||| .|
RBAM_006070__ 95 TTGAAGAAATAAGAAAAATAAGCGTGGATATCATGGCGCATCATACCGGC 144
BSNT_02068 141 ACAGAC----GGACATTGAAGTTATCACTGATTTATGGAAT----GGGGA 182
||.||| ||| |.||||..||..||| | ||.||
RBAM_006070__ 145 ACCGACAAAAGGA--------TCATCAAAGACGTAT----TCGCCGGTGA 182
BSNT_02068 183 GAGCGGCTATCCGACACCGAAAGCGGATGTTCGCGGCGCAGTATTCCGAG 232
.|..||||||||.||.|||||||..|||.|..|.|..|||||.||...||
RBAM_006070__ 183 CACGGGCTATCCCACTCCGAAAGTTGATATCAGAGCGGCAGTTTTTAAAG 232
BSNT_02068 233 AGAATCAG---ATTTTGCTTGTCCGGGAG--AAGCATGATGAGCTG-TGG 276
||||| ||.||..|.||..|.||| |||| ||.| ||.| |||
RBAM_006070__ 233 ---ATCAGAGCATATTAATGGTAAGAGAGAAAAGC--GACG-GCAGATGG 276
BSNT_02068 277 TCGCTGCCGGGTGGATTTTGC-GAGATTGGTTTATCGCCAGCTGAAAACG 325
.||||||||||.||| |..|| ||.||.||..|.||.||.|..||.|.||
RBAM_006070__ 277 GCGCTGCCGGGCGGA-TGGGCTGATATCGGGATTTCTCCGGGCGAGACCG 325
BSNT_02068 326 TCGTCAAGGAAATCAAAGAAGAGTCGGGGTACGA--TACAGAGCCGTCTC 373
..|||||.|||.|.|||||.||.|||||...||| ||.|| .|||| |.
RBAM_006070__ 326 CTGTCAAAGAAGTAAAAGAGGAATCGGGAATCGACGTAAAG-CCCGT-TA 373
BSNT_02068 374 GATTGCTGGCCGTGCTAGACAGCCATAAA---CACTCTCATCC-CCCTCA 419
.|.||.|.||.||..|.||.| |.||| ||.||.||||| ||.||.
RBAM_006070__ 374 AACTGTTAGCTGTAATGGATA---AGAAATGCCATTCCCATCCGCCGTCC 420
BSNT_02068 420 GCCTTATCACTATTATAAAATCTTCATCGCATGC---AGCAT-GACGGGC 465
||| ...|||..|||.|||.|.||.|||..|||| |.||| |.|||.|
RBAM_006070__ 421 GCC-GCCCACGTTTACAAAGTGTTTATCAAATGCGAGATCATCGGCGGCC 469
BSNT_02068 466 GG-GCAGGGGGAAACAGGGATC-GAGACGAATCATGCCGC---TTTTTTT 510
|| .||||| |||||.| ||.|| ||.| ||||| .||||||
RBAM_006070__ 470 GGCTCAGGG------AGGGAACAGAAAC-AAGC--GCCGCCGGCTTTTTT 510
BSNT_02068 511 CCGGAAGACAG-CCTCCCGCCGCTTTCT----CCC---AAACGAAACACA 552
.||||| ||.| .||.||||||||.||| ||| |.|||.||
RBAM_006070__ 511 GCGGAA-ACGGAACTGCCGCCGCTATCTGAAGCCCGCAATACGGAA---- 555
BSNT_02068 553 CCCTCA--CAGCTTAGCATGCTGTTTGACTTTTTGCGCCATCCGGACAAG 600
| |||.||...|.|.||||||..|.|.|....||||||||| |
RBAM_006070__ 556 -----AGTCAGATTGAAAAGATGTTTGCATATCTCAAACATCCGGAC--G 598
BSNT_02068 601 AAAACG---ATATTTGACTAA 618
||..|| || |||||.|||
RBAM_006070__ 599 AACCCGTTTAT-TTTGATTAA 618
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