Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03865 and RBAM_006050

See Amino acid alignment / Visit BSNT_03865 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:10
# Commandline: needle
#    -asequence dna-align/BSNT_03865___bltR.1.9828.seq
#    -bsequence dna-align/RBAM_006050___bltR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03865___bltR-RBAM_006050___bltR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03865___bltR-RBAM_006050___bltR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03865___bltR
# 2: RBAM_006050___bltR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 861
# Identity:     590/861 (68.5%)
# Similarity:   590/861 (68.5%)
# Gaps:          78/861 ( 9.1%)
# Score: 1863.5
# 
#
#=======================================

BSNT_03865___      1 ATGAGCGAAGATGTTAAGAAGTATTTCACAACAGGGGAGTTTTCGAAGCT     50
                     |||||||||||.||.|..||.||.||||||||.||.||.|||.|.||.||
RBAM_006050__      1 ATGAGCGAAGACGTCAGAAAATACTTCACAACGGGTGAATTTGCAAAACT     50

BSNT_03865___     51 CTGCCGTGTAAAAAAACAAACCTTATTTCATTATGATGAGATTGGTCT--     98
                     .||||..|||||||||||||||.|.||.||||||||.|||||.||.||  
RBAM_006050__     51 GTGCCACGTAAAAAAACAAACCCTGTTCCATTATGACGAGATCGGCCTGC    100

BSNT_03865___     99 TTTCTCGCCGGAAATAAAAAAAGAAAATGGGTATAGATATTATTCCTATC    148
                     |||||  ||||||||.|||||||..||.||.||.|||||.||||||||||
RBAM_006050__    101 TTTCT--CCGGAAATCAAAAAAGCGAACGGATACAGATACTATTCCTATC    148

BSNT_03865___    149 ATCAATTTGAGATTTTTCAAGTCATCAGTCTATTTAAAGAGCTTGGGGTT    198
                     |||||||.||..|.||.||.||||||.||||.|||||.|||.|.||.||.
RBAM_006050__    149 ATCAATTCGAACTGTTCCAGGTCATCGGTCTGTTTAAGGAGGTCGGCGTG    198

BSNT_03865___    199 CCATTAAAAGAAAT-AAAGTG-TCTAATAAAAGGAAAAACACCAGACAAG    246
                     ||.||.||..|.|| |||..| |||  |||.||..|||||.||.||....
RBAM_006050__    199 CCCTTGAAGCAGATCAAACCGCTCT--TAACAGACAAAACCCCTGAGGGT    246

BSNT_03865___    247 ATCCTGCATG-TTCTAAAAGAAAAGTCTATTGAGATTGATAAAAAAATAA    295
                     |||.| ||.| ||.|||||||.||.|||...||.||.||.|..|||||.|
RBAM_006050__    247 ATCAT-CACGCTTTTAAAAGAGAAATCTTCAGAAATCGAAAGCAAAATCA    295

BSNT_03865___    296 ATGAGCTTAAGCAGTTGCAAACGATCTTACAAACAAAAGTGACGCTTACA    345
                     |..||||..||||..|.||||.|||..|.|..|||||.||||.|||.||.
RBAM_006050__    296 AAAAGCTGGAGCACCTCCAAAGGATGATTCGGACAAAGGTGAAGCTGACC    345

BSNT_03865___    346 GAACAAGCACTT-GAGACTGATTTTTCCTCAATTTCTTT----TGAATAT    390
                     |||||||| ||| |||||.||.||||||||..|.||.||    .||    
RBAM_006050__    346 GAACAAGC-CTTGGAGACAGACTTTTCCTCCGTCTCATTGCAGCGA----    390

BSNT_03865___    391 TTAAATGAAGAAACATTCATGTTAAG-----CCGAAAAACATTAAACTTA    435
                     |||.|||||||.|||.|.|||.||.|     |||.|...|||     ||.
RBAM_006050__    391 TTAGATGAAGAGACACTTATGATAGGACGGCCCGTACTCCAT-----TTG    435

BSNT_03865___    436 CCAGAACGAAAATATGTGGCAGCCATTTCAGAACTCATTC-----ATGAA    480
                     ||||||||..|||||...||.||.|||||.|||.|.||.|     |||  
RBAM_006050__    436 CCAGAACGGCAATATACTGCCGCTATTTCCGAATTGATCCGCTATATG--    483

BSNT_03865___    481 GTTCAGCAATATGAATTAGATGAAGGATATCCGATAGGCGGAATCTTTGC    530
                        |.|..|.|||||.|.|||.|.||..|||||.|.||||||.|.|||||
RBAM_006050__    484 ---CGGGTACATGAACTCGATCAGGGGCATCCGGTCGGCGGACTGTTTGC    530

BSNT_03865___    531 ACGGGAACA-AATCTTAGAAAAAGACTTCTACAATTACAGTTACTTTTAT    579
                     .|||||.|| |.|||.| |||||||.||||||||.||||...|.||||||
RBAM_006050__    531 GCGGGAGCAGATTCTGA-AAAAAGAATTCTACAACTACACCCATTTTTAT    579

BSNT_03865___    580 ATAAAAGTAAAAGATG-GGGCAGAGAACATAAA-------TTATCATGTA    621
                     ||.||   .|.||||| .||||.|||..|||.|       .|||||    
RBAM_006050__    580 ATGAA---GACAGATGAAGGCATAGAGAATAGAGACCTCCATATCA----    622

BSNT_03865___    622 CGGCCAAAAGGCCTGTATGCAGTTGGATATGAAATAGGCG--GAAATACT    669
                      .|||.|||||.||.|||||.||.||.||..|||||||.|  |||  .|.
RBAM_006050__    623 -AGCCGAAAGGGCTTTATGCCGTCGGGTACCAAATAGGGGATGAA--GCG    669

BSNT_03865___    670 GAAGAGGCGTACCGGAGAATCATTGAGTTCATTGAAAGA-AATGGAATGC    718
                     ||||.|||.|||||.||.|||||..||||.|||| |||| .||||..||.
RBAM_006050__    670 GAAGCGGCTTACCGCAGCATCATGCAGTTTATTG-AAGAGTATGGGCTGG    718

BSNT_03865___    719 AAATAGGGGAAAATGCATATGAGGAATATATGCTGGATGAGATGGTAGTT    768
                     ||||.||.||..||||||||||.|||||||||||.||||||.|.||.|..
RBAM_006050__    719 AAATGGGCGATTATGCATATGAAGAATATATGCTTGATGAGGTTGTGGCG    768

BSNT_03865___    769 GACGGGTATGAAAATACATAT-GCAAAAATCCTCCTTCAAGT------TA    811
                     |||||||.|||.||| ||.|| .|||.|||||..||.|||||      ||
RBAM_006050__    769 GACGGGTTTGACAAT-CAGATCACAAGAATCCAGCTGCAAGTCCGCAGTA    817

BSNT_03865___    812 AAGAGGTGTAA    822
                           .||||
RBAM_006050__    818 ------CGTAA    822


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03865 and RBAM_006050

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
