Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_00982 and RBAM_006030

See Amino acid alignment / Visit BSNT_00982 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:40
# Commandline: needle
#    -asequence dna-align/BSNT_00982___ydhB.1.9828.seq
#    -bsequence dna-align/RBAM_006030___ydhB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00982___ydhB-RBAM_006030___ydhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00982___ydhB-RBAM_006030___ydhB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00982___ydhB
# 2: RBAM_006030___ydhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 784
# Identity:     567/784 (72.3%)
# Similarity:   567/784 (72.3%)
# Gaps:          71/784 ( 9.1%)
# Score: 2128.0
# 
#
#=======================================

BSNT_00982___      1 ---------------ATGCTCATTATTCTTGTTATGTTTCTTCTAGGAAT     35
                                    .||||.|||||.||.||||||||||||||.||.||
RBAM_006030__      1 ATGGAGGAGAAGATTGTGCTTATTATACTCGTTATGTTTCTTCTCGGGAT     50

BSNT_00982___     36 TATTTTAGGCTTTATTGGCGCCGGTGGAGCCGGCTTTGTCATTGCCCTTT     85
                     ||||.|.||.|||||.||||||||.||||||||.|||||||||||.||||
RBAM_006030__     51 TATTCTCGGGTTTATCGGCGCCGGGGGAGCCGGTTTTGTCATTGCACTTT    100

BSNT_00982___     86 TAACGCTTCTTTTCCATATCCCGATTCATACGGCTTTAGGCACTTCGCTT    135
                     ||||..|.||.||.|||.|.|||||||||||||||||.|||||.||.|||
RBAM_006030__    101 TAACTATACTGTTTCATGTACCGATTCATACGGCTTTGGGCACCTCCCTT    150

BSNT_00982___    136 GCCGGCATGGCTTTTACAAGCTTATCAGGGGCATACAGCCACTATCGCGA    185
                     |||||.||||||||.|||||.|||||.|||||.|.|||||||||.||.||
RBAM_006030__    151 GCCGGAATGGCTTTCACAAGTTTATCGGGGGCTTTCAGCCACTACCGTGA    200

BSNT_00982___    186 GGGCAACATTCAAATGAAAATCGGCTTAATAGTCGGAGGCTTTGCTGCGG    235
                     .|||||.|||||.|||||.||||||.|.||.|||||.|..|||||.||..
RBAM_006030__    201 AGGCAATATTCAGATGAAGATCGGCCTCATCGTCGGCGTTTTTGCGGCAT    250

BSNT_00982___    236 TTGGCTCATTTTTCGGCGCCAAGCTGACATCTTTTATTCCGGCTGATTTG    285
                     |.||.||.||||||||.||.|.|||.||.||..||||.||.||.||||||
RBAM_006030__    251 TCGGTTCGTTTTTCGGGGCAAGGCTTACTTCCCTTATCCCCGCAGATTTG    300

BSNT_00982___    286 CTTCATTATTTGACGGCTGGAATGTTATTTTTATCAGCAATTCTCATTTT    335
                     ||.|||||.||||||||.||.|||.|.||||||||.||..|.||.|||||
RBAM_006030__    301 CTGCATTACTTGACGGCGGGCATGCTGTTTTTATCTGCTCTGCTTATTTT    350

BSNT_00982___    336 AATCAGATTATTTATTTTAAAAGAGAAGGCTCAAGTGAAT---------C    376
                     |.||.|.|||||||||.|||||||.|   |.||||...||         |
RBAM_006030__    351 AGTCCGGTTATTTATTGTAAAAGAAA---CACAAGAAGATTCCGGACAGC    397

BSNT_00982___    377 AAAGCACTCTTTCAACGTATA----CGAGAGC------------GGTCAT    410
                     ||||||.||  |.||  ||||    .||.|||            .|||||
RBAM_006030__    398 AAAGCAATC--TGAA--TATATGGGTGAAAGCCGTTGTACTCGGTGTCAT    443

BSNT_00982___    411 CTTAGGAATTGCAGCCGGCGTTCTT-TCCGGCACATTCGGCATCGGGTCG    459
                     |..|||||             |||| |||||.||||||||||||||.||.
RBAM_006030__    444 CGCAGGAA-------------TCTTGTCCGGAACATTCGGCATCGGCTCT    480

BSNT_00982___    460 GCACCTTTTATTCAAATCGGTTTAATGATTAT-----GCTGAATCTGTCC    504
                     ||.|||||.||.||||||||.|||||||||.|     |||     |.|||
RBAM_006030__    481 GCTCCTTTCATCCAAATCGGCTTAATGATTCTTTTGCGCT-----TATCC    525

BSNT_00982___    505 ATTCGCCATTCTGTCGGAACGACGATGCTTGTGATCATCCCTTTGGCTGT    554
                     ||.|||||.||.|||||.||.||.||||||||.||.|||||..|.||.||
RBAM_006030__    526 ATCCGCCAGTCGGTCGGCACCACCATGCTTGTCATTATCCCGCTTGCGGT    575

BSNT_00982___    555 AGGTGGAGGCATCGGATATATTACAGAAGGTTTTGTTGATTACGTTTTGC    604
                     .||.|||||..||||.|||.|.||.|||||.|||||.|||||..|..||.
RBAM_006030__    576 CGGCGGAGGACTCGGTTATGTGACGGAAGGATTTGTCGATTATATGCTGT    625

BSNT_00982___    605 TTGTCAAAGTTCTGGTCGGGACAATGTGCGGTGCCTATGTAGGCGCGAAA    654
                     |.||||||||.|||.||||.||.||||||||.||.|||||.||.||||||
RBAM_006030__    626 TGGTCAAAGTGCTGATCGGAACGATGTGCGGCGCATATGTCGGAGCGAAA    675

BSNT_00982___    655 TTCACCAACCTCATGCCAAAGGTGGTTTTGAAATCAGCCATCTTTTTGAC    704
                     ||||||||||||.||||.||.||..||.|||||||||||||||||||.||
RBAM_006030__    676 TTCACCAACCTCGTGCCGAAAGTCATTCTGAAATCAGCCATCTTTTTAAC    725

BSNT_00982___    705 TCCGGCGATTGCAGGCCTGCTGTTGTTATTCTAA    738
                     .|||||.||.||.||.||..||.|.|||||.|||
RBAM_006030__    726 ACCGGCCATCGCCGGTCTCATGCTTTTATTTTAA    759


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00982 and RBAM_006030

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
