Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00969 and RBAM_005960
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:39
# Commandline: needle
# -asequence dna-align/BSNT_00969___expZ.1.9828.seq
# -bsequence dna-align/RBAM_005960___expZ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00969___expZ-RBAM_005960___expZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00969___expZ-RBAM_005960___expZ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00969___expZ
# 2: RBAM_005960___expZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1721
# Identity: 1195/1721 (69.4%)
# Similarity: 1195/1721 (69.4%)
# Gaps: 166/1721 ( 9.6%)
# Score: 3969.5
#
#
#=======================================
BSNT_00969___ 1 ATGAAAGAGATTGTAACATTAA----CAAACGTTAGCTATGAAGTAAAGG 46
||||||||.||..|||.|.||| || |.||.||||||
RBAM_005960__ 1 ATGAAAGAAATGTTAAAAATAAGCGGCA----TCAGTTATGAA------- 39
BSNT_00969___ 47 ATCAAACTG--------TTTTTAAACATGTAAACGCCAGTGTTCAGCAAG 88
||| |||.| |||||.||||..|.|.|||.||.||||||||||
RBAM_005960__ 40 ATC-AACAGCGTTCCCCTTTTTGAACAGATCAGCGCGAGCGTTCAGCAAG 88
BSNT_00969___ 89 GAGATATCATTGGGATTACCGGAAAAAACGGCGCTGGGAAATC--TACGC 136
|.||.|||||.||..|||.|||.|||||||||||.||.||||| || .
RBAM_005960__ 89 GTGACATCATCGGCGTTATCGGTAAAAACGGCGCCGGCAAATCGTTA--T 136
BSNT_00969___ 137 TGCTGCACCTCATTCA----CACTGACTTAGCCCCTTCACAGGGACAAAT 182
||||||| |||.| ||.|.|...|||.||.|||||.|||||.||
RBAM_005960__ 137 TGCTGCA----ATTGATCTGCAATCAAAAAGCGCCGTCACAAGGACAGAT 182
BSNT_00969___ 183 CC------TTCGGAAG-------GATATAAAACTGGCTTTGGTTGAACAG 219
|| | |.||| .||||| |.||||.|||||.
RBAM_005960__ 183 CCAGATGAT--GCAAGATGTGAACATATA--------TATGGTGGAACAA 222
BSNT_00969___ 220 GAAACCGCGGCGTATTCCTTTGCGG--ATCAGACACCTGCCGAAAAGAAG 267
|||||.|..||.||| ..||.||| |||.|...|||||.| |.|.||
RBAM_005960__ 223 GAAACGGAAGCTTAT--GATTCCGGCCATCCGGAGCCTGCGG--AGGCAG 268
BSNT_00969___ 268 --TTACTGGAGAAATGGCATGTGCCTCTTCGTG-ATTTTCATCAGTTAAG 314
||..||||.||.|||.|.|||||....||.| .||||| .||.|||||
RBAM_005960__ 269 CCTTGTTGGAAAAGTGGAACGTGCCCGCACGCGCCTTTTC-GCAATTAAG 317
BSNT_00969___ 315 CGGCGGTGAAAAACTGAAAGCGCGGCTGGCGAAAGGACTATC-------A 357
||||||.||||||||||||||.||.||.||.|||||..|.|| |
RBAM_005960__ 318 CGGCGGAGAAAAACTGAAAGCCCGTCTTGCCAAAGGTTTCTCCTCCTCAA 367
BSNT_00969___ 358 GAGGATGCAGATCTGCTGCTGTTAGATGAACCGACAAACCACCTTGATGA 407
|||| .||..||.|.||||||||.|||||.||||||||.|||.|
RBAM_005960__ 368 ------GCAG-CCTTTTGTTATTAGATGAGCCGACGAACCACCTCGATCA 410
BSNT_00969___ 408 AAAAAGCTTGCAATTTCT----CATCCAACATCTGAAACATTATAGCGGC 453
..|.||.||..||.|.|| .||| |.||| ||..||||.|..|||
RBAM_005960__ 411 GCACAGTTTAGAAATACTGCTAAATC--AGATC--AAGAATTACAAAGGC 456
BSNT_00969___ 454 ACTGTGATTCTCGTTTCTCACGATCGATATTTTTTAGACGAAGCCGCAAC 503
||..|.|||.|.|||||.||.|||||...||||.||||.|.||||||.||
RBAM_005960__ 457 ACCATTATTTTTGTTTCGCATGATCGTGCTTTTATAGATGCAGCCGCGAC 506
BSNT_00969___ 504 AAAAATATGGTCGCTTG-AGGATCAGACGCTGATTGAATTCAAAGGGAAT 552
||||||.|||.|..|.| |||| .|||..||.||||||...|||||||||
RBAM_005960__ 507 AAAAATCTGGGCCATCGAAGGA-AAGAAACTCATTGAACATAAAGGGAAT 555
BSNT_00969___ 553 TACTCCGGGTATATGAAGTTCCGGGAGAAGAAAAGACTCACCCAGCAGCG 602
||.||..|.||||||.||.||||..|..|||.||||||.||.||||||||
RBAM_005960__ 556 TATTCAAGCTATATGGAGGTCCGCAAACAGAGAAGACTGACACAGCAGCG 605
BSNT_00969___ 603 TGAATATGAAAAGCAGCAAAAAATGGTTGAACGGATTGAAGCACAAATGA 652
.||||||||.||.|||||.||.|||||..||.||||||||||.|||||||
RBAM_005960__ 606 CGAATATGAGAATCAGCAGAATATGGTCAAAAGGATTGAAGCTCAAATGA 655
BSNT_00969___ 653 ATGGGCT---CGCTTCTTGGTCGGAAAAAGCCCACGCCCAATCGACGAAA 699
|.|.||| || |.|||||..|||||||||||||||||||.||||||
RBAM_005960__ 656 ACGAGCTGAGCG---CCTGGTCAAAAAAAGCCCACGCCCAATCAACGAAA 702
BSNT_00969___ 700 AAGGAAGGGTTTAAAGAATATCATAGGGTAAAAGCGAAGCGTACGGATGC 749
|..|||||||||||||||||.|||.|.||||||||.||.||.|||||.||
RBAM_005960__ 703 ATAGAAGGGTTTAAAGAATACCATCGCGTAAAAGCAAAACGCACGGACGC 752
BSNT_00969___ 750 CCAGATTAAATCCAAGCAGAAGCGGCTTGAAAAAGAGCTGGAAAAAGCAA 799
||||||||||||.|||||||||||.||||||||||||||.||||||||.|
RBAM_005960__ 753 CCAGATTAAATCAAAGCAGAAGCGTCTTGAAAAAGAGCTTGAAAAAGCGA 802
BSNT_00969___ 800 AGGCGGAACCCGTTACCCCAGAATATACAGTCCGCTTTTCAATCGATACA 849
|.||.|||||.|||....|.||.|||..||||||.|||||.||.|| .||
RBAM_005960__ 803 AAGCAGAACCGGTTGAAGCGGAGTATGAAGTCCGTTTTTCCATTGA-GCA 851
BSNT_00969___ 850 ACCCACAAAA-CAGGAAAACGTTTTTTAGAAGTTCAGAATGTAACAAAAG 898
.|.||.|||| |.|||||.||||||||||||||...|.||||.|||||..
RBAM_005960__ 852 CCGCAAAAAAGCGGGAAAGCGTTTTTTAGAAGTAAGGGATGTCACAAAGT 901
BSNT_00969___ 899 CGTTTGGAGAAAGGACCCTCTTTAAAAACGCAAACTTTAC---GATTCAG 945
|.|.||..|.|.|.||.||.||.|||||||..||.||.|| ||| |
RBAM_005960__ 902 CATATGACGGACGAACGCTTTTCAAAAACGTGAATTTCACTGTGAT---G 948
BSNT_00969___ 946 CACGGCGAAAAGGTTGCGATCATAGGCCCCAATGGCAGCGGAAAAACGAC 995
|||||.||||||.|.|||||.|.||||||.||.||||||||.|||||.||
RBAM_005960__ 949 CACGGTGAAAAGATCGCGATTACAGGCCCGAACGGCAGCGGGAAAACAAC 998
BSNT_00969___ 996 ATTACTGAACATCATTCTGGGACAGGAAACAGCAGAAGGAAGTGTATGGG 1045
||||.||||..||||.||.||.|||||||.|||..|.||.||..|||||.
RBAM_005960__ 999 ATTATTGAAGGTCATCCTCGGGCAGGAAAAAGCGCAGGGCAGCATATGGA 1048
BSNT_00969___ 1046 TGTCGCCGTCTGCAAACATCGGCTATTTAACGCAGGAGGTGTTTGATTTG 1095
|.||.||||||||||||.||||.||||||||||||||.||.||.||..|.
RBAM_005960__ 1049 TTTCTCCGTCTGCAAACGTCGGATATTTAACGCAGGAAGTATTCGACCTC 1098
BSNT_00969___ 1096 CCTTTAGAACAAACACCGGAAGAGTTATTTGAGAATGAAACATTTAAAGC 1145
||..|.||..||||.||.|||.||.|.|||.|.||.|||||.||..|.|.
RBAM_005960__ 1099 CCGCTTGATAAAACCCCCGAACAGCTTTTTTACAAAGAAACGTTCGAGGA 1148
BSNT_00969___ 1146 AAGAGGGCACGTTCAAAATCTGATGAGACACTTAGGTTTTACAGCTGCCC 1195
||||||..|.||||||..|||.||||..||.|||||.|||||.||.||.|
RBAM_005960__ 1149 AAGAGGAAATGTTCAATCTCTCATGAAGCATTTAGGATTTACCGCGGCGC 1198
BSNT_00969___ 1196 AATGGACTGAACCGAT---CAAGCATATGAGTATGGGTGAGCGTGTAAAG 1242
|||||||.|||||.|| |||| |||||.|||||.|||||.||.||
RBAM_005960__ 1199 AATGGACGGAACCCATCGGCAAG---ATGAGCATGGGAGAGCGGGTCAA- 1244
BSNT_00969___ 1243 AT-CAAGCTGATGGCATATATTCTGGAGGAAAAAGACGTGCTGATTTTAG 1291
|| |||.||||||||.|.||||.|.|||||.|||||.|||||||||.|.|
RBAM_005960__ 1245 ATGCAAACTGATGGCGTTTATTTTAGAGGAGAAAGATGTGCTGATTCTGG 1294
BSNT_00969___ 1292 ATGAGCCGACAAACCATCTCGACCTGCCTTCACGCGAACAGCTGGAAGAA 1341
||||||||||||||||.||.||.|||||.||||||||.|||||.|||||.
RBAM_005960__ 1295 ATGAGCCGACAAACCACCTTGATCTGCCGTCACGCGAGCAGCTTGAAGAC 1344
BSNT_00969___ 1342 ACACTGTCACAATACAGCGGCACATTGCTGGC-----GGTATCACATGAC 1386
||..||.|.|.||||..|||.|| ||| | .|||||.|||||.
RBAM_005960__ 1345 ACTTTGGCCCGATACGACGGAAC---GCT--CATCATCGTATCTCATGAT 1389
BSNT_00969___ 1387 CGATACTTTCTCGAAAAAACAACAAACA----GTAAACTCGTCATCTCAA 1432
||.||||||.|||||||.||.||..||| | ||.|..|||||||
RBAM_005960__ 1390 CGTTACTTTGTCGAAAAGACGACGGACATCCGG----CTTGATATCTCAA 1435
BSNT_00969___ 1433 ACAACGGCATCAAAAAGCAGTTAAATGA--CGCCGCTCCTTCTGAAAGAA 1480
||..|.||.||..|||.||.|..||.|| |.|| ||||.|| ||..
RBAM_005960__ 1436 ACGGCAGCGTCCGAAAACAATGGAAAGAATCTCC-CTCCGTC----AGGG 1480
BSNT_00969___ 1481 ATGA-GCGGGAAGAGCTTCGGTTAAAGCTTGAGACAGAAAGACAAGAAGT 1529
|.|| || .|||||.||.||.||.|||||||||||.|||.|.||.|||||
RBAM_005960__ 1481 ACGATGC-TGAAGAACTGCGATTGAAGCTTGAGACCGAACGGCAGGAAGT 1529
BSNT_00969___ 1530 GCTGGGAAAGCTCAGTTTTATGACGCCAAATGATAAAGGGTATAAGGAGC 1579
.||.|||||.|||||.||.||||||||...|||||||...|||...||||
RBAM_005960__ 1530 CCTCGGAAAACTCAGCTTCATGACGCCGGCTGATAAACAATATCGTGAGC 1579
BSNT_00969___ 1580 TTGATCAGGCTTTCAATGAGCTTACGAAACGAATAAAAGAGCTGGATCAT 1629
|||||||....|||||.|||||.||| .||||| ||
RBAM_005960__ 1580 TTGATCAAAAATTCAAAGAGCTGACG---------GAAGAG-------AT 1613
BSNT_00969___ 1630 CAAGACAA---AAATGACTGA 1647
||||| || ||||||
RBAM_005960__ 1614 CAAGA-AATTGAAATGA---- 1629
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