Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03913 and RBAM_005870

See Amino acid alignment / Visit BSNT_03913 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:12
# Commandline: needle
#    -asequence dna-align/BSNT_03913___yraD.1.9828.seq
#    -bsequence dna-align/RBAM_005870___yraD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03913___yraD-RBAM_005870___yraD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03913___yraD-RBAM_005870___yraD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03913___yraD
# 2: RBAM_005870___yraD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 300
# Identity:     242/300 (80.7%)
# Similarity:   242/300 (80.7%)
# Gaps:           0/300 ( 0.0%)
# Score: 978.0
# 
#
#=======================================

BSNT_03913___      1 ATGAATCCTATCATAGAATATCTGACTGGCATGAATGTTCTGACAGACCA     50
                     ||||||||.||.||.|||||..||||.||.|||||||..|||||||||||
RBAM_005870__      1 ATGAATCCGATTATGGAATACTTGACGGGAATGAATGCACTGACAGACCA     50

BSNT_03913___     51 AATCATCGCTATGGACTTATTAATTTCAGCAAAAAACGGAGTCAGAAATT    100
                     |||..||||.|||||.|||||||.|||.|||||||.|||.||||||||.|
RBAM_005870__     51 AATTGTCGCAATGGATTTATTAAATTCGGCAAAAAGCGGTGTCAGAAACT    100

BSNT_03913___    101 ATGCGATGGCAGCCACTGAAGCCGGAACACCTGAAGTAAAAGAGGTCCTT    150
                     ||||||||||.||.||.|||||||||||.||||||||.||||.|.||||.
RBAM_005870__    101 ATGCGATGGCGGCGACGGAAGCCGGAACGCCTGAAGTGAAAGCGATCCTC    150

BSNT_03913___    151 ATCCGCCATTTGGAAGAAGCCCTTGATATGCACGAACAACTCTCGAGCTA    200
                     |.|||.||.||.|||||||||.|.||.|||||.||.|||.||||..||||
RBAM_005870__    151 ACCCGTCACTTAGAAGAAGCCATCGACATGCATGAGCAAATCTCACGCTA    200

BSNT_03913___    201 TATGATGGAAAAAGGCTGGTACCATCCTTGGAACACTGACGAACAAGTCA    250
                     |||||||||||||||||||||.||.||.||||||||..|.|||||||||.
RBAM_005870__    201 TATGATGGAAAAAGGCTGGTATCACCCGTGGAACACAAATGAACAAGTCC    250

BSNT_03913___    251 AGCTGAATTTACAAAATATTGATACAGCGATTCAATTGCCGACCCTTTAA    300
                     .|||.|||||.||||||||||||||.|||.|.|...||||...|||.|||
RBAM_005870__    251 GGCTCAATTTGCAAAATATTGATACGGCGCTCCGCCTGCCCGTCCTATAA    300


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.