Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00382 and RBAM_005530
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:09
# Commandline: needle
# -asequence dna-align/BSNT_00382.1.9828.seq
# -bsequence dna-align/RBAM_005530___ybfB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00382-RBAM_005530___ybfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00382-RBAM_005530___ybfB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00382
# 2: RBAM_005530___ybfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1344
# Identity: 597/1344 (44.4%)
# Similarity: 597/1344 (44.4%)
# Gaps: 546/1344 (40.6%)
# Score: 1871.5
#
#
#=======================================
BSNT_00382 1 ATG-----AAAAGACTGCATTATGCGTGGATCATCGTCTCCGTCACCTTT 45
||| ||||.| .||.|||||.||||||||.||.|..|||||.|||
RBAM_005530__ 1 ATGCGAATAAAATA--TCACTATGCATGGATCATTGTGTTTGTCACTTTT 48
BSNT_00382 46 TTGATCTTATTGGCGGTTCAGGGGGTGCGGCTGTCGTTTGGTGCGTTTGT 95
||.|.|||.||.||||||||.||.|.|||.||.||.|||||.||.|||||
RBAM_005530__ 49 TTCACCTTTTTAGCGGTTCAAGGCGCGCGTCTTTCATTTGGAGCTTTTGT 98
BSNT_00382 96 GGAGCCGTGGGAACGGCAGTTTTCAATCGATAGAAGCACCATCTCGCTGA 145
.||.||.||||||....|.|||||.||..|||||.|.||.|||||.||.|
RBAM_005530__ 99 TGAACCATGGGAAAAAGATTTTTCTATGAATAGAGGAACAATCTCACTTA 148
BSNT_00382 146 TTTCGACGGTGAGTTTTATTGTTTATGGCATATCACAGCCTGTGATCGGT 195
||||.||..||||||||||..|.|||||||||||.|||||..|.||.||.
RBAM_005530__ 149 TTTCCACTCTGAGTTTTATCATATATGGCATATCTCAGCCCATAATAGGG 198
BSNT_00382 196 CGGCTTGTGGACAAATGGGGTGCCCGGGCTG-TTTTGGCATGGAGT--GC 242
.||||.||.||.||||..||| |||.|..|| |||||.| ||| ||
RBAM_005530__ 199 AGGCTGGTTGATAAATTAGGT-CCCCGAATGATTTTGTC----AGTCAGC 243
BSNT_00382 243 GTTACT------GACAGGAGTCAGCATTTTCTTAACATACCTTGTGACTT 286
||| |.|.||| |||||.||.|.||.||.|...||||.|.|.
RBAM_005530__ 244 ---ACTTTCGTAGTCGGGA-TCAGCTTTATATTGACTTCTTTTGTAAATC 289
BSNT_00382 287 CGCCTTGGCAGCTGTTTTTGCTTTATGGGCTGGGTGTCTCGCTTGGAGTG 336
..||.|||||..|.|||.|.|||||.||..|.|.|.||||..|.||.||.
RBAM_005530__ 290 ATCCATGGCAATTATTTATCCTTTACGGAATTGTTATCTCAGTCGGTGTT 339
BSNT_00382 337 GGAGGAGCGTCGAATGTGGCGGCAAGTGTATTGGTCGT---CAATTGGTT 383
|||||.||.||.|||||.||.|||| .|.||||.|| .||||||||
RBAM_005530__ 340 GGAGGGGCATCCAATGTAGCCGCAA---CAGTGGTTGTTACAAATTGGTT 386
BSNT_00382 384 CAGCAAAAAGCGGGGACTAGCCTTTGGGACCATGGAAGCAGGCTTTGGCG 433
.|...||||.||.|||||.||.|||||.|..|||||.|||||.|||||||
RBAM_005530__ 387 TAATGAAAAACGCGGACTTGCTTTTGGAATTATGGAGGCAGGGTTTGGCG 436
BSNT_00382 434 CGGGGCAAATGCTTCTCGTTCCCGGCTCACTCATGTTGATCCATTGGTTT 483
||||.||.||||||||.||||||||.||.|||||.|||||.||.||||||
RBAM_005530__ 437 CGGGTCAGATGCTTCTTGTTCCCGGATCTCTCATTTTGATTCAATGGTTT 486
BSNT_00382 484 AGCTGGAAGCTGACGGTTGTGGTGTTGGGACTGCTGTTAATCTTGATTGT 533
|.|||||||.|.||.||.|||.|.|||||.|||.|.|||||..|.|||||
RBAM_005530__ 487 AACTGGAAGTTAACTGTAGTGATTTTGGGTCTGATTTTAATGGTTATTGT 536
BSNT_00382 534 CTTTCCGGCTGCGCTGCTGATGCTG---------CGGAACAATCCTTCAG 574
.|||||.| |.||.||| |||||..||||....|
RBAM_005530__ 537 GTTTCCTG---------TCATACTGTTATTCTTACGGAATCATCCCGGCG 577
BSNT_00382 575 AAAAGAATACAGAG------CCGATAGGCGG--------ACTGGCTGCAT 610
|.|.| |.| ||.||.||||| | |.
RBAM_005530__ 578 AGATG------GGGCTATCTCCTATGGGCGGTTTTATGAA--------AG 613
BSNT_00382 611 CAGAA----AAAG-AAACAGCA-----CCCAAAACAACAGCTCTTTCAG- 649
||||| |||| .||||||| |||| || ||||.|
RBAM_005530__ 614 CAGAAGCTGAAAGTGAACAGCATACGGCCCA---------CT-TTTCTGT 653
BSNT_00382 650 -TGGCCGGGATGTTTCGGATGAGGCAATTCTGGTTCTTGATTTTTCCGTT 698
|||.|.| |||||.|.|.||..|||||||||||.||.||.||.|| |
RBAM_005530__ 654 TTGGACAG--TGTTTTGCAAGAAACAATTCTGGTTTTTAATATTACC--T 699
BSNT_00382 699 TTTG--ATCTGTGGATTTACGACCGTGGGGTTGATGGATACCCATTTGAT 746
|||| ||.||.||.|||||.||....|||.|||||||||||||..|.||
RBAM_005530__ 700 TTTGCTATATGCGGTTTTACAACTACAGGGCTGATGGATACCCACCTTAT 749
BSNT_00382 747 TCCGTTTTCTCATGATCATGGCTTTTCAACGACAGTCACGAGTGCTGCTG 796
.||.|||||||||||.|||||.||||||||.|..||.||.||||||||.|
RBAM_005530__ 750 CCCTTTTTCTCATGACCATGGATTTTCAACAAGTGTAACCAGTGCTGCAG 799
BSNT_00382 797 TCAGTCTGCTGGCAGG-CTTAATATTGCTGGCATCTTGCTGTCCGGAATT 845
|.|||.||.||||.|| .||||||||...||.|||.|..|.||.||||||
RBAM_005530__ 800 TTAGTGTGTTGGCGGGATTTAATATTTTGGGGATCATTATTTCAGGAATT 849
BSNT_00382 846 GTAG---------------------------------------------- 849
|..|
RBAM_005530__ 850 GCGGCAGACCGTTGGAGCAGTAAAAAGATGCTTATTCTTTTATATGTCAT 899
BSNT_00382 849 -------------------------------------------------- 849
RBAM_005530__ 900 ACGCGCATTATCAATTTGTATCCTGTTATATAGTCATCATCCGGTCATAT 949
BSNT_00382 849 -------------------------------------------------- 849
RBAM_005530__ 950 TGCTTATTTTTGCCACCCTGTTTGGACTAGTTGATTTTGCAACTGTAGCT 999
BSNT_00382 849 -------------------------------------------------- 849
RBAM_005530__ 1000 CCTACTCAAATGTTAGCCACGCAATATTTTAAACAATATTCAGTTGGTTT 1049
BSNT_00382 849 -------------------------------------------------- 849
RBAM_005530__ 1050 TATTTTAGGCTGGTTATTCCTGAGCCATCAGATAGGATCAGCGCTGGGAG 1099
BSNT_00382 849 -------------------------------------------------- 849
RBAM_005530__ 1100 CTTATGTACCAGGTTTTCTCTATAGTGAAATGGGTAACTATGATCTTTCT 1149
BSNT_00382 849 -------------------------------------------------- 849
RBAM_005530__ 1150 TTTTATTTCTCAATTATTATTTTGTTGGGAGCGGCAATATTTACTTTCTT 1199
BSNT_00382 849 -------------------------------------------------- 849
RBAM_005530__ 1200 ACTGCCTGAAACGGTGAAAATAAAAAAAGAACAAAAACCGAAGACCGATT 1249
BSNT_00382 849 -------------------------------------------- 849
RBAM_005530__ 1250 CAGCTTCAAATGAAACAGTATCCAAGCGTGTGAATACCCCGTGA 1293
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