Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00382 and RBAM_005530

See Amino acid alignment / Visit BSNT_00382 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:09
# Commandline: needle
#    -asequence dna-align/BSNT_00382.1.9828.seq
#    -bsequence dna-align/RBAM_005530___ybfB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00382-RBAM_005530___ybfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00382-RBAM_005530___ybfB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00382
# 2: RBAM_005530___ybfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1344
# Identity:     597/1344 (44.4%)
# Similarity:   597/1344 (44.4%)
# Gaps:         546/1344 (40.6%)
# Score: 1871.5
# 
#
#=======================================

BSNT_00382         1 ATG-----AAAAGACTGCATTATGCGTGGATCATCGTCTCCGTCACCTTT     45
                     |||     ||||.|  .||.|||||.||||||||.||.|..|||||.|||
RBAM_005530__      1 ATGCGAATAAAATA--TCACTATGCATGGATCATTGTGTTTGTCACTTTT     48

BSNT_00382        46 TTGATCTTATTGGCGGTTCAGGGGGTGCGGCTGTCGTTTGGTGCGTTTGT     95
                     ||.|.|||.||.||||||||.||.|.|||.||.||.|||||.||.|||||
RBAM_005530__     49 TTCACCTTTTTAGCGGTTCAAGGCGCGCGTCTTTCATTTGGAGCTTTTGT     98

BSNT_00382        96 GGAGCCGTGGGAACGGCAGTTTTCAATCGATAGAAGCACCATCTCGCTGA    145
                     .||.||.||||||....|.|||||.||..|||||.|.||.|||||.||.|
RBAM_005530__     99 TGAACCATGGGAAAAAGATTTTTCTATGAATAGAGGAACAATCTCACTTA    148

BSNT_00382       146 TTTCGACGGTGAGTTTTATTGTTTATGGCATATCACAGCCTGTGATCGGT    195
                     ||||.||..||||||||||..|.|||||||||||.|||||..|.||.||.
RBAM_005530__    149 TTTCCACTCTGAGTTTTATCATATATGGCATATCTCAGCCCATAATAGGG    198

BSNT_00382       196 CGGCTTGTGGACAAATGGGGTGCCCGGGCTG-TTTTGGCATGGAGT--GC    242
                     .||||.||.||.||||..||| |||.|..|| |||||.|    |||  ||
RBAM_005530__    199 AGGCTGGTTGATAAATTAGGT-CCCCGAATGATTTTGTC----AGTCAGC    243

BSNT_00382       243 GTTACT------GACAGGAGTCAGCATTTTCTTAACATACCTTGTGACTT    286
                        |||      |.|.||| |||||.||.|.||.||.|...||||.|.|.
RBAM_005530__    244 ---ACTTTCGTAGTCGGGA-TCAGCTTTATATTGACTTCTTTTGTAAATC    289

BSNT_00382       287 CGCCTTGGCAGCTGTTTTTGCTTTATGGGCTGGGTGTCTCGCTTGGAGTG    336
                     ..||.|||||..|.|||.|.|||||.||..|.|.|.||||..|.||.||.
RBAM_005530__    290 ATCCATGGCAATTATTTATCCTTTACGGAATTGTTATCTCAGTCGGTGTT    339

BSNT_00382       337 GGAGGAGCGTCGAATGTGGCGGCAAGTGTATTGGTCGT---CAATTGGTT    383
                     |||||.||.||.|||||.||.||||   .|.||||.||   .||||||||
RBAM_005530__    340 GGAGGGGCATCCAATGTAGCCGCAA---CAGTGGTTGTTACAAATTGGTT    386

BSNT_00382       384 CAGCAAAAAGCGGGGACTAGCCTTTGGGACCATGGAAGCAGGCTTTGGCG    433
                     .|...||||.||.|||||.||.|||||.|..|||||.|||||.|||||||
RBAM_005530__    387 TAATGAAAAACGCGGACTTGCTTTTGGAATTATGGAGGCAGGGTTTGGCG    436

BSNT_00382       434 CGGGGCAAATGCTTCTCGTTCCCGGCTCACTCATGTTGATCCATTGGTTT    483
                     ||||.||.||||||||.||||||||.||.|||||.|||||.||.||||||
RBAM_005530__    437 CGGGTCAGATGCTTCTTGTTCCCGGATCTCTCATTTTGATTCAATGGTTT    486

BSNT_00382       484 AGCTGGAAGCTGACGGTTGTGGTGTTGGGACTGCTGTTAATCTTGATTGT    533
                     |.|||||||.|.||.||.|||.|.|||||.|||.|.|||||..|.|||||
RBAM_005530__    487 AACTGGAAGTTAACTGTAGTGATTTTGGGTCTGATTTTAATGGTTATTGT    536

BSNT_00382       534 CTTTCCGGCTGCGCTGCTGATGCTG---------CGGAACAATCCTTCAG    574
                     .|||||.|         |.||.|||         |||||..||||....|
RBAM_005530__    537 GTTTCCTG---------TCATACTGTTATTCTTACGGAATCATCCCGGCG    577

BSNT_00382       575 AAAAGAATACAGAG------CCGATAGGCGG--------ACTGGCTGCAT    610
                     |.|.|      |.|      ||.||.|||||        |        |.
RBAM_005530__    578 AGATG------GGGCTATCTCCTATGGGCGGTTTTATGAA--------AG    613

BSNT_00382       611 CAGAA----AAAG-AAACAGCA-----CCCAAAACAACAGCTCTTTCAG-    649
                     |||||    |||| .|||||||     ||||         || ||||.| 
RBAM_005530__    614 CAGAAGCTGAAAGTGAACAGCATACGGCCCA---------CT-TTTCTGT    653

BSNT_00382       650 -TGGCCGGGATGTTTCGGATGAGGCAATTCTGGTTCTTGATTTTTCCGTT    698
                      |||.|.|  |||||.|.|.||..|||||||||||.||.||.||.||  |
RBAM_005530__    654 TTGGACAG--TGTTTTGCAAGAAACAATTCTGGTTTTTAATATTACC--T    699

BSNT_00382       699 TTTG--ATCTGTGGATTTACGACCGTGGGGTTGATGGATACCCATTTGAT    746
                     ||||  ||.||.||.|||||.||....|||.|||||||||||||..|.||
RBAM_005530__    700 TTTGCTATATGCGGTTTTACAACTACAGGGCTGATGGATACCCACCTTAT    749

BSNT_00382       747 TCCGTTTTCTCATGATCATGGCTTTTCAACGACAGTCACGAGTGCTGCTG    796
                     .||.|||||||||||.|||||.||||||||.|..||.||.||||||||.|
RBAM_005530__    750 CCCTTTTTCTCATGACCATGGATTTTCAACAAGTGTAACCAGTGCTGCAG    799

BSNT_00382       797 TCAGTCTGCTGGCAGG-CTTAATATTGCTGGCATCTTGCTGTCCGGAATT    845
                     |.|||.||.||||.|| .||||||||...||.|||.|..|.||.||||||
RBAM_005530__    800 TTAGTGTGTTGGCGGGATTTAATATTTTGGGGATCATTATTTCAGGAATT    849

BSNT_00382       846 GTAG----------------------------------------------    849
                     |..|                                              
RBAM_005530__    850 GCGGCAGACCGTTGGAGCAGTAAAAAGATGCTTATTCTTTTATATGTCAT    899

BSNT_00382       849 --------------------------------------------------    849
                                                                       
RBAM_005530__    900 ACGCGCATTATCAATTTGTATCCTGTTATATAGTCATCATCCGGTCATAT    949

BSNT_00382       849 --------------------------------------------------    849
                                                                       
RBAM_005530__    950 TGCTTATTTTTGCCACCCTGTTTGGACTAGTTGATTTTGCAACTGTAGCT    999

BSNT_00382       849 --------------------------------------------------    849
                                                                       
RBAM_005530__   1000 CCTACTCAAATGTTAGCCACGCAATATTTTAAACAATATTCAGTTGGTTT   1049

BSNT_00382       849 --------------------------------------------------    849
                                                                       
RBAM_005530__   1050 TATTTTAGGCTGGTTATTCCTGAGCCATCAGATAGGATCAGCGCTGGGAG   1099

BSNT_00382       849 --------------------------------------------------    849
                                                                       
RBAM_005530__   1100 CTTATGTACCAGGTTTTCTCTATAGTGAAATGGGTAACTATGATCTTTCT   1149

BSNT_00382       849 --------------------------------------------------    849
                                                                       
RBAM_005530__   1150 TTTTATTTCTCAATTATTATTTTGTTGGGAGCGGCAATATTTACTTTCTT   1199

BSNT_00382       849 --------------------------------------------------    849
                                                                       
RBAM_005530__   1200 ACTGCCTGAAACGGTGAAAATAAAAAAAGAACAAAAACCGAAGACCGATT   1249

BSNT_00382       849 --------------------------------------------    849
                                                                 
RBAM_005530__   1250 CAGCTTCAAATGAAACAGTATCCAAGCGTGTGAATACCCCGTGA   1293


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