Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06250 and RBAM_005300
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:41
# Commandline: needle
# -asequence dna-align/BSNT_06250___yyaQ.1.9828.seq
# -bsequence dna-align/RBAM_005300.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06250___yyaQ-RBAM_005300.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06250___yyaQ-RBAM_005300.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06250___yyaQ
# 2: RBAM_005300
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 425
# Identity: 207/425 (48.7%)
# Similarity: 207/425 (48.7%)
# Gaps: 151/425 (35.5%)
# Score: 422.5
#
#
#=======================================
BSNT_06250___ 1 ATGTTAACAAGAGAAGATATCTTTAAACACGTCAAAGAAAAATACGGTAC 50
|| ||| ||| |.|..|||.||.|
RBAM_005300 1 AT----------GAA-------TTA------TGATGGAATAAAA------ 21
BSNT_06250___ 51 ATCGCCTGATTACCCGTGGGTGAAATACCCAAAC---TATG-----CTTC 92
|||||| ||..|.|..|..|||||| |||| |.||
RBAM_005300 22 -------GATTAC---TGCCTAACCTTTCCAAACTCTTATGAAGACCATC 61
BSNT_06250___ 93 --TTTGAGACAT------ACATCAA------ACAAAAAATGGTACGGTCT 128
|||| ||.|| ||..||| ||||| ||
RBAM_005300 62 CTTTTG-GAGATGGTTGGACTGCAATTCGTCACAAA---------GG--- 98
BSNT_06250___ 129 TATCATGAATGTTCTCCCAGAAAA-ATTAG-GCTTGGATGGTCA-TGGCG 175
|||| .|||||| |||.| .||| ||..||| |.|||
RBAM_005300 99 ------GAAT-------AAGAAAATATTTGCACTT--ATCTTCACTCGCG 133
BSNT_06250___ 176 A--AATAGATAT-TCTAAATCTAAAATGTCCCCCTGAAA----------- 211
| ||.|..||| |.|.||.||.|||||....|||||||
RBAM_005300 134 ACGAACACTTATGTGTCAACCTTAAATGCGAACCTGAAAGGGCTGATTTT 183
BSNT_06250___ 212 -TAAGTGATAGCTT----AAGAAACGGGGAAAATATCTTACCCGGATATC 256
||.|||.| ||| ||||| |||...||||||||.|
RBAM_005300 184 CTACGTGGT--CTTTTTGAAGAA-----------ATCAAGCCCGGATACC 220
BSNT_06250___ 257 ATATGGATAAGGAACATTGGATTTCAATTGTTTTAGA--ACGGACAGAT- 303
|||||.|.|||||.|||||||.|.|..||...||||| |.|||| |
RBAM_005300 221 ATATGAACAAGGAGCATTGGAATACTCTTACCTTAGATGAGGGAC---TC 267
BSNT_06250___ 304 CCAGAAGGCGAAATCTATAACTTAATCGAGCAGAGCTTTCATTT-----A 348
|||||...|.|||||.||.||.|..|..||.|.||||||.|..| |
RBAM_005300 268 CCAGAGCACCAAATCCATGACATGGTAAAGTACAGCTTTGAACTGACAAA 317
BSNT_06250___ 349 ACC---AAGTGA------------- 357
||| ||||.|
RBAM_005300 318 ACCAAAAAGTAAAAAGGAAACATAA 342
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