Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00815 and RBAM_005110
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:36
# Commandline: needle
# -asequence dna-align/BSNT_00815___ydcK.1.9828.seq
# -bsequence dna-align/RBAM_005110___ydcK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00815___ydcK-RBAM_005110___ydcK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00815___ydcK-RBAM_005110___ydcK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00815___ydcK
# 2: RBAM_005110___ydcK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 463
# Identity: 363/463 (78.4%)
# Similarity: 363/463 (78.4%)
# Gaps: 23/463 ( 5.0%)
# Score: 1381.5
#
#
#=======================================
BSNT_00815___ 1 ATGGATAATATAGAGCTTCAAAAGCTGACAGAGGATATTTCTAAAACA-T 49
||||||||...|.|.||||||||||||||.||.||.||.||| ..||| .
RBAM_005110__ 1 ATGGATAACGAACAACTTCAAAAGCTGACGGAAGACATCTCT-TTACAGG 49
BSNT_00815___ 50 ATTTTAAAAAGCCGTTCCGCCATCAGGCGCTTTTT-AATGACAGGCTTAA 98
||||...||||||||||||.||.|.||| |||||| ||||||.||||.||
RBAM_005110__ 50 ATTTCGGAAAGCCGTTCCGTCACCGGGC-CTTTTTCAATGACCGGCTGAA 98
BSNT_00815___ 99 AACCACGGGCGGAAGGTACCTGTTAACCTCTCATAACATTGAATTGAACA 148
|||.||.|||||..|.|||.||.|..|.||.||||||||.|||||.|||.
RBAM_005110__ 99 AACGACAGGCGGCCGCTACATGCTGTCTTCCCATAACATCGAATTAAACC 148
BSNT_00815___ 149 GAAAATATCTGATTGAACACGGCAGGGAG-GAACTGATCGGCATCATCAA 197
|||||||||||||.|||||||| |.|||| ||.|||.|.||.||||||||
RBAM_005110__ 149 GAAAATATCTGATCGAACACGG-ACGGAGCGAGCTGGTAGGAATCATCAA 197
BSNT_00815___ 198 GCACGAGCTCTGCCATTATCATCTTCACCTTGAAGGAAAAGGGTACAAGC 247
.||||||||.|||||||||||||||||.|||||.||||||||||||||||
RBAM_005110__ 198 ACACGAGCTGTGCCATTATCATCTTCATCTTGAGGGAAAAGGGTACAAGC 247
BSNT_00815___ 248 ACAGAGACAGAGATTTTAGA---ATGCTTTTGCAGCAAGTCAACGCGCCG 294
|||||||||.||||||.||| .||||| |||.|||||...||||||
RBAM_005110__ 248 ACAGAGACAAAGATTTCAGAGACCTGCTT---CAGAAAGTCGGAGCGCCG 294
BSNT_00815___ 295 AGGTTCTGTACACCCCT--TAAGAAAAAAGCGGAAAACAAA--AAAACTT 340
||.|||||.||.||.|| .||..|||||| |.||||| |||||.|
RBAM_005110__ 295 AGATTCTGCACGCCGCTGCAAACCAAAAAG----ACACAAAAGAAAACAT 340
BSNT_00815___ 341 ATATGTATATCTGTACGGCCTGCGGCCAACAGTATATAAAGAAGCGCGCC 390
|||||||||..||..|||||||||||||||||||||||||||||||.||.
RBAM_005110__ 341 ATATGTATAGATGCGCGGCCTGCGGCCAACAGTATATAAAGAAGCGGGCA 390
BSNT_00815___ 391 ATGAACCCTGACAGATACAGGTGCGGAAAATGCCGCGGAAAAATAAAAAG 440
|||||.||.||.|||||....||||||||.|||.|.||||||||.|||||
RBAM_005110__ 391 ATGAATCCGGAAAGATATGCCTGCGGAAAGTGCAGAGGAAAAATCAAAAG 440
BSNT_00815___ 441 AATTTTTTCGTAA 453
||||||| |||
RBAM_005110__ 441 AATTTTT---TAA 450
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