Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00811 and RBAM_005090
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:36
# Commandline: needle
# -asequence dna-align/BSNT_00811___ydcI.1.9828.seq
# -bsequence dna-align/RBAM_005090___ydcI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00811___ydcI-RBAM_005090___ydcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00811___ydcI-RBAM_005090___ydcI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00811___ydcI
# 2: RBAM_005090___ydcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2181
# Identity: 1694/2181 (77.7%)
# Similarity: 1694/2181 (77.7%)
# Gaps: 42/2181 ( 1.9%)
# Score: 6469.5
#
#
#=======================================
BSNT_00811___ 1 ATGGAAACGTCAGCCCTTTTAAAACAGCAAATTGCGAAAGAAATAGGTTT 50
||||||||||.|||||||||.|||.|.||||||||..||||||.||..||
RBAM_005090__ 1 ATGGAAACGTTAGCCCTTTTGAAAAAACAAATTGCTGAAGAAACAGCGTT 50
BSNT_00811___ 51 ATCACAAAAACACGTTGAAAGTGTCATCCGCCTGCTAGAAGACGGCAATA 100
|||.||||||||.||.||||||||||||||||||||.|||||||||||||
RBAM_005090__ 51 ATCCCAAAAACATGTCGAAAGTGTCATCCGCCTGCTGGAAGACGGCAATA 100
BSNT_00811___ 101 CAGTACCGTTTATTGCCCGGTATCGAAAAGAGCAGACGGGTTCAATGGAT 150
|.||.|||||||||||.|||||.||||||||||||||.||.||||||||.
RBAM_005090__ 101 CCGTCCCGTTTATTGCGCGGTACCGAAAAGAGCAGACCGGCTCAATGGAC 150
BSNT_00811___ 151 GAGGTTCAGATTCAGACGATTTCTGAACGCTGGCAATACATACAAAACCT 200
|||||.|||||||||.|.||.||.||.||.||||||||||||||||||||
RBAM_005090__ 151 GAGGTGCAGATTCAGGCAATCTCCGAGCGGTGGCAATACATACAAAACCT 200
BSNT_00811___ 201 GAACCAGCGAAAAGAAGAAGTCATCAGGCTGATTGCAGAGCAGGATAAAC 250
||..|||||.|||||||||||||||||..||||..|.||||||||.||.|
RBAM_005090__ 201 GACGCAGCGGAAAGAAGAAGTCATCAGATTGATCTCTGAGCAGGACAAGC 250
BSNT_00811___ 251 TGACAGATGATCTAAAAGGTAAAATCGAGCAATCGGTGAAGCTTCAGGAA 300
||||.||.|..||.||....||||||||.|||.||||.||||||||||||
RBAM_005090__ 251 TGACGGAAGGGCTGAAGCAAAAAATCGAACAAGCGGTTAAGCTTCAGGAA 300
BSNT_00811___ 301 GTGGAAGACCTTTACCG-CCCTTATAAACAAAAACGCAAAACAAAGGCGA 349
||.||.||..|.||||| ||||| .|||||||||||.||||||||.||.|
RBAM_005090__ 301 GTCGAGGATTTATACCGTCCCTT-CAAACAAAAACGGAAAACAAAAGCCA 349
BSNT_00811___ 350 CAGTCGCCAAAAGCAAAGGCCTTGAGCCGCTTGCCGACTATATCCTGACA 399
|.|||||||||||||||||.|||||.||||||||.||||||||.||..|.
RBAM_005090__ 350 CCGTCGCCAAAAGCAAAGGTCTTGAACCGCTTGCGGACTATATTCTTTCT 399
BSNT_00811___ 400 CTTCCCCAAGATGATCGTCT----GGCAGCAACTGCAGACCAATACATCA 445
||.||..||||..|.||.|| |.||.| ||.||.|||||.||||
RBAM_005090__ 400 CTCCCGAAAGAAAACCGCCTTCACGACATC----GCTGATCAATATATCA 445
BSNT_00811___ 446 GCGAAGAAAAAGAAGT--GTTCACACGAGAAGAAGCGATTGAAGGCGCCA 493
|.|.|||||||||||| .|| ||.||||.|||||.|||||||||||.|
RBAM_005090__ 446 GTGCAGAAAAAGAAGTCGCTT--CAAGAGAGGAAGCCATTGAAGGCGCGA 493
BSNT_00811___ 494 AGCACATTATTGCGGAACAAATCTCAGACGAGCCGACCTTCAGAAAGTGG 543
|||||||.||.||.|||||||||||.||.||.||....||||||||||||
RBAM_005090__ 494 AGCACATCATAGCCGAACAAATCTCGGATGACCCTCATTTCAGAAAGTGG 543
BSNT_00811___ 544 ATTCGCCAGGAAACCTTCAAAAGAGGAACCATTAAGTCCGCAGCCGGAAA 593
||||||||||||||.|..||||.|||||...|.|..|||||.||.||.||
RBAM_005090__ 544 ATTCGCCAGGAAACGTATAAAAAAGGAATTCTCACTTCCGCGGCAGGCAA 593
BSNT_00811___ 594 GT---CGGCAGACACCGATGAGAAAAATGTGTATGAAATGTATTACGAGT 640
|| |.||||| .||.||||||||.||.|||||||||||.|||||||
RBAM_005090__ 594 GTCAGCCGCAGA---TGACGAGAAAAACGTCTATGAAATGTACTACGAGT 640
BSNT_00811___ 641 ATGAAGAGCCAATTGCAAAA-GTTGTTCCGCATAGGGTGCTGGCAATGAA 689
|.||||||||.| |.||||| ||.|||||.||.||.|||||.||.|||||
RBAM_005090__ 641 ACGAAGAGCCGA-TCCAAAAGGTCGTTCCTCACAGAGTGCTTGCGATGAA 689
BSNT_00811___ 690 CCGCGGCGAAAAAGAAGATATTTTAAAGGTAGCGATCGAACCGCCTGCGG 739
||||||.||||||||||..|||||||||.|.||||||||||||||.||.|
RBAM_005090__ 690 CCGCGGTGAAAAAGAAGGCATTTTAAAGATTGCGATCGAACCGCCCGCCG 739
BSNT_00811___ 740 ATCACATTAAGGCGTATTTAGAAAAACAAATCATCAAAAATCGCTCAACA 789
||||.||.||.||.|||||||||||.|||||.||||||.|.||...|||.
RBAM_005090__ 740 ATCAGATAAAAGCTTATTTAGAAAAGCAAATTATCAAACACCGTGAAACG 789
BSNT_00811___ 790 TCCGTAAGAGAGATTTTGCAGGAGACAATTGAAGACAGCTATAAAAGGCT 839
.|.||.|.|||.|...||.|.||..|.|||||.|||||.||.|||.|.||
RBAM_005090__ 790 CCTGTGAAAGAAACGCTGAAAGAAGCCATTGAGGACAGTTACAAACGTCT 839
BSNT_00811___ 840 GATCCAGCCGGCAATCGAGCGTGAAATCAGGAAAGAGCTCTCAGAAAAAG 889
||||||||||||.||.|||||.||.|||.|.||||||||.||||||||||
RBAM_005090__ 840 GATCCAGCCGGCTATTGAGCGCGATATCCGCAAAGAGCTGTCAGAAAAAG 889
BSNT_00811___ 890 CTGATGAACAGGCGATTCATATTTTCTCAGAGAACTTGAGAAAGCTTCTT 939
|.||.|..||||||||.|||||||||.|.||.||..||.|.|||||.||.
RBAM_005090__ 890 CAGACGCGCAGGCGATCCATATTTTCGCTGAAAATCTGCGTAAGCTCCTG 939
BSNT_00811___ 940 TTGCAGCCGCCGATGAAAGGCAAAACCGTTCTCGGTGTTGACCCAGCCTT 989
.||||||||||||||||.||.|||..|||.|||||.||.||.||.|||||
RBAM_005090__ 940 CTGCAGCCGCCGATGAAGGGAAAAGTCGTGCTCGGCGTCGATCCGGCCTT 989
BSNT_00811___ 990 TCGAACCGGCTGTAAGCTCGCTGT-GTCAGATGAGACTGGAAAAGTCTTG 1038
.||.||.||.||.||.||.||.|| || .||||||||.||||||||..||
RBAM_005090__ 990 CCGTACGGGGTGCAAACTGGCAGTCGT-TGATGAGACGGGAAAAGTGCTG 1038
BSNT_00811___ 1039 AAAATTGATGTGATCTATCCGCATGCGCCAGTCAACAAAACAAAAGAAGC 1088
|||||.||.||.||.||.|||||.||.||.||.||.||.|||...|||||
RBAM_005090__ 1039 AAAATCGACGTCATTTACCCGCACGCTCCCGTAAAAAAGACAGCGGAAGC 1088
BSNT_00811___ 1089 CCATGAAAAAGTGAAAAAGATT-CTTGAGCAGTATCAAGTCGAGATGGTG 1137
.||..|||||.|.|||.| ||| ||.||.|.|||..||||||||.|.|||
RBAM_005090__ 1089 ACAGAAAAAAATCAAACA-ATTGCTGGACCGGTACGAAGTCGAGGTTGTG 1137
BSNT_00811___ 1138 GCGATCGGAAACGGCACAGCATCCAGAGAAACAGAACAATTCATCGTCAA 1187
||||||||||||||.||.|||||.|||||.|||||.||||||.||||..|
RBAM_005090__ 1138 GCGATCGGAAACGGAACGGCATCAAGAGAGACAGAGCAATTCGTCGTTGA 1187
BSNT_00811___ 1188 TGTACTGAAAGACATGCCGCGCAAAATTTATTATGTGATCGTCAATGAAG 1237
|||.||||||||.|....|||..|.|||||||||||.||||||||.||.|
RBAM_005090__ 1188 TGTGCTGAAAGAAACAGAGCGGGACATTTATTATGTCATCGTCAACGAGG 1237
BSNT_00811___ 1238 CGGGTGCAAGCGTCTATTCGGCTTCAGAGCTGGCCCGAGAAGAATTCCCT 1287
|.||.||||||||.|||||.||.|||||..|.|||||.||||||||.||.
RBAM_005090__ 1238 CCGGAGCAAGCGTGTATTCCGCGTCAGAAATCGCCCGTGAAGAATTTCCG 1287
BSNT_00811___ 1288 GACCTTAAGGTTGAAGAGCGCAGTGCCGTGTCTATTGCGCGAAGACTTCA 1337
||..||.||||.|||||||||||.|||||.||.||.|||||.||..|.||
RBAM_005090__ 1288 GATTTTCAGGTCGAAGAGCGCAGCGCCGTCTCCATCGCGCGGAGGTTGCA 1337
BSNT_00811___ 1338 AGACCCGCTTGCGGAGCTCGTTAAAATCGATCCGAAGTCTGTTGGTGTCG 1387
.||||||||.||.|||||.||.|||||.|||||.||.||.||.||.||||
RBAM_005090__ 1338 GGACCCGCTGGCCGAGCTTGTAAAAATTGATCCTAAATCCGTCGGCGTCG 1387
BSNT_00811___ 1388 GACAGTATCAGCATGACGTCAGCCAAAAACGCTTAAATGAATCTCTGCGG 1437
|.||.||.|||||.||.|||||||||||.|..|||||.||||||||.||.
RBAM_005090__ 1388 GGCAATACCAGCACGATGTCAGCCAAAAGCAATTAAACGAATCTCTCCGT 1437
BSNT_00811___ 1438 TTTGTCGTCGAAACGGTCGTAAACCAGGTGGGAGTAAACGTCAACACAGC 1487
||||||||.||.||.|||||.|||||.||.||.||.||.|||||.|||||
RBAM_005090__ 1438 TTTGTCGTAGAGACCGTCGTCAACCAAGTCGGGGTGAATGTCAATACAGC 1487
BSNT_00811___ 1488 CTCCGCCGCGCTGCTTCAGTATGTAGCGGGATTATCGAAGTCTGTAGCAG 1537
.||.||||||||||||||.||||||||.||.|||||.||..|.||.||.|
RBAM_005090__ 1488 ATCAGCCGCGCTGCTTCAATATGTAGCCGGGTTATCCAAAACCGTTGCCG 1537
BSNT_00811___ 1538 GCAACGTTGTCAAAAAACGTGAGGAAATCGGAAAGTTTTCAAATCGAAAA 1587
|.||..|.|||||||||.|.||.||..|||||||.|||.|||||||.|||
RBAM_005090__ 1538 GTAATATCGTCAAAAAAAGGGAAGAGCTCGGAAAATTTACAAATCGCAAA 1587
BSNT_00811___ 1588 GAACTGAAGGACATCCCAAGGTTAGGTGCGAAAACCTACGAGCAATGTAT 1637
||.|||||.||.|||||..|..|.||.||.|||||.||.||.||.||.||
RBAM_005090__ 1588 GAGCTGAAAGAAATCCCGCGTCTCGGCGCAAAAACATATGAACAGTGCAT 1637
BSNT_00811___ 1638 CGGTTTCTTAAGAGTG-CAGGAAGGGACA-GAGCCTTTGGATAGAACAGG 1685
|||.||.||.|||||| |.||| ||||| ||.||..|.||..|.||.||
RBAM_005090__ 1638 CGGCTTTTTGAGAGTGCCCGGA--GGACAGGAACCGCTCGACCGCACCGG 1685
BSNT_00811___ 1686 CATCCACCCGGAAAGCTATAAAGAAACAAAAGCACTTTTGAAAAAACTCG 1735
.||.||||||||||||||||||||.|||||.||.||..|.|||||||| |
RBAM_005090__ 1686 GATACACCCGGAAAGCTATAAAGAGACAAAGGCGCTGCTCAAAAAACT-G 1734
BSNT_00811___ 1736 GA-CTTTCAACAGAACATATCGGCACGGCGGAATTGAAGGACAAAAT--- 1781
.| ||..|..|.||.||.|||||.|..|||||....||.||.|||||
RBAM_005090__ 1735 CAGCTCACTGCGGATCAGATCGGAAGCGCGGACGCAAAAGAGAAAATAAG 1784
BSNT_00811___ 1782 --CAATCAGCTGGCGCTCTCTGAAACGGCAAAAGAGCTGGGAATCGGCGA 1829
|| |||.||||.|||||||||||..|||||||.||.||.||.||
RBAM_005090__ 1785 CGCA-----CTGCCGCTGTCTGAAACGGCTGAAGAGCTTGGTATAGGGGA 1829
BSNT_00811___ 1830 AATCACTCTGAAAGACATTTGTGAACAGCTGACAAGGCCGGAACGCGATC 1879
|||.||.||....||.|||||.|..|||||||||||||||||.||.||||
RBAM_005090__ 1830 AATTACGCTTGCGGATATTTGCGGGCAGCTGACAAGGCCGGAGCGAGATC 1879
BSNT_00811___ 1880 CGCGCGATGAGGTGCCTAAGCCTTTGCTGAAAACAGACGTCCTTCAGCTG 1929
|.||.||.||.|||||.||||||||||||||||.||||||.||.|||||.
RBAM_005090__ 1880 CTCGTGACGAAGTGCCGAAGCCTTTGCTGAAAAAAGACGTTCTGCAGCTT 1929
BSNT_00811___ 1930 GAAGATTTGAAAGAGGGAATGGAACTGCAGGGCACCGTGCGCAATGTAGT 1979
||.|||||.||.||.|||||||||.|||||||||||||.|||||.||.||
RBAM_005090__ 1930 GAGGATTTAAAGGAAGGAATGGAATTGCAGGGCACCGTCCGCAACGTTGT 1979
BSNT_00811___ 1980 GGACTTCGGAGCGTTTGTTGATATCGGAGTCAAACAAGACGGGCTTGTGC 2029
.||||||||.||.||.||.||||||||.|||||.||.|||||||||||||
RBAM_005090__ 1980 AGACTTCGGCGCTTTCGTCGATATCGGCGTCAAGCAGGACGGGCTTGTGC 2029
BSNT_00811___ 2030 ATATCTCAAAATTGAGCAATCAATTCGTCAAGCATCCTCTTGATGTCGTA 2079
|.||.||||||.|||||||||||||||||||.||||||||.||.||||||
RBAM_005090__ 2030 ACATTTCAAAACTGAGCAATCAATTCGTCAAACATCCTCTCGACGTCGTA 2079
BSNT_00811___ 2080 TCTGTCGGCGATATTGTGACAGTTTGGGTTGACGGCGTAGATGTACAAAA 2129
||.|||||.||.||.||.||.||.||||||||.||.||.||.||.|||||
RBAM_005090__ 2080 TCGGTCGGGGACATCGTCACCGTATGGGTTGAAGGGGTGGACGTGCAAAA 2129
BSNT_00811___ 2130 AGGCAGAGTATCGCTGTCTATGGTAAAATAA 2160
.||||||||.|||||||||||||||||||||
RBAM_005090__ 2130 GGGCAGAGTGTCGCTGTCTATGGTAAAATAA 2160
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