Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00794 and RBAM_004980
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:35
# Commandline: needle
# -asequence dna-align/BSNT_00794___alr.1.9828.seq
# -bsequence dna-align/RBAM_004980___alr.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00794___alr-RBAM_004980___alr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00794___alr-RBAM_004980___alr.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00794___alr
# 2: RBAM_004980___alr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1196
# Identity: 895/1196 (74.8%)
# Similarity: 895/1196 (74.8%)
# Gaps: 52/1196 ( 4.3%)
# Score: 3234.5
#
#
#=======================================
BSNT_00794___ 1 ATGAGCACAAAACCTTTTTACAGAGATACGTGGGCGGAAATTGACTTGTC 50
||||.||||..|.|.|||||||||||.||||||||||||||..||.||||
RBAM_004980__ 1 ATGAACACAGCATCCTTTTACAGAGAAACGTGGGCGGAAATCAACCTGTC 50
BSNT_00794___ 51 CGCGATAAAGGAAAATGTCA-GCAATATGAAAAAACATATCGGTGAACAT 99
||||||.||.|||||||||| || |||||||||||||.|||||..||.|.
RBAM_004980__ 51 CGCGATTAAAGAAAATGTCACGC-ATATGAAAAAACACATCGGGCAAAAC 99
BSNT_00794___ 100 GTCCACCTGATGGCAGTTGTGAAAGCAAACGCCTACGGGCATGGTGATGC 149
|||||.||.|||||.|||||.||.||.|||||.|||||.||.||.|||..
RBAM_004980__ 100 GTCCATCTCATGGCGGTTGTAAAGGCGAACGCTTACGGCCACGGAGATTT 149
BSNT_00794___ 150 AGAAACAGCAAAGGCTGCTCTTGACGCAGGTGCTTCATG-CTTGGCGGTG 198
.|||...|..||.||.||.|||||.||.|||||.||.|| ||| ||.||.
RBAM_004980__ 150 GGAAGTTGGGAAAGCCGCGCTTGAAGCGGGTGCCTCTTGTCTT-GCCGTA 198
BSNT_00794___ 199 GCCATTTTGGATGAAGCGATTTCACTGCGTAAAAAGGG--ATTGAAGGCG 246
|||||..|||||||||||||||||.||.| ||||.||| ||| |..|||
RBAM_004980__ 199 GCCATACTGGATGAAGCGATTTCATTGAG-AAAACGGGGCATT-ACAGCG 246
BSNT_00794___ 247 CCTATATTGGTGCTCGGCGCGGTTCCCCCGGAGTATGTGGCAATC-GCTG 295
||.||..|.|||||.|||||.||.||.||.||.||||| .|||.| ||||
RBAM_004980__ 247 CCGATTCTCGTGCTTGGCGCCGTGCCGCCCGAATATGT-ACAAGCAGCTG 295
BSNT_00794___ 296 CTGAGTATGACGTGACCTTAACGGGTTATTCTGTTGAATGGCTTCAGGAG 345
|.|||||||||||.||..|.|||||.|||||||||||||||||||||||.
RBAM_004980__ 296 CCGAGTATGACGTAACACTCACGGGGTATTCTGTTGAATGGCTTCAGGAA 345
BSNT_00794___ 346 GCTGCCCGCCA-CACGAAA-----AAAGGTTATCTTCATTTTCATCTGAA 389
|||||.||||| |.||.|| |.|| |.|..|||||||||||
RBAM_004980__ 346 GCTGCGCGCCACCTCGGAAGTGCGACAG------TGCCGTTTCATCTGAA 389
BSNT_00794___ 390 GGTCGATACGGGGATGAACAGGCTTGGTGTAAAAACAGAGGAAGAAGTTC 439
.|||||.||.||.||||||||.||.||.||.|||||.|||||||||.|.|
RBAM_004980__ 390 AGTCGACACCGGTATGAACAGACTCGGAGTCAAAACGGAGGAAGAAATCC 439
BSNT_00794___ 440 AGAACGTGATGGCCATTCTTGACCGCAACCCTCGTTTAAAGTGCAAAGGG 489
|.|.||||.|....||.||...||..||.||..|||||...||.|||||.
RBAM_004980__ 440 AAAGCGTGTTAAAAATCCTCAGCCAAAATCCCGGTTTAGTCTGTAAAGGC 489
BSNT_00794___ 490 GTATTTACCCATTTTGCGACAGCGGATGAAAAAGAAAGAGGCTATTTCTT 539
|||||.|||||||||||.||.||||||||.|||.|.||||..||||||.|
RBAM_004980__ 490 GTATTCACCCATTTTGCTACCGCGGATGAGAAAAACAGAGATTATTTCCT 539
BSNT_00794___ 540 AATGCAGTTTGAGCGCTTTAAAGAGCTGATTGCTCCGCTGCCGTT-AAAG 588
..|.||||||||.|||||||||....||||.||||||||.||.|| ||||
RBAM_004980__ 540 CTTCCAGTTTGACCGCTTTAAAACATTGATCGCTCCGCTTCCTTTAAAAG 589
BSNT_00794___ 589 AATCTGATGGTCCACTGCGCGAACAGCGCCGCCGGACTCCGGCTGAAAAA 638
||| |||||||.|||||||||||||||||.||||||||.||.||.|||||
RBAM_004980__ 590 AAT-TGATGGTGCACTGCGCGAACAGCGCTGCCGGACTTCGCCTTAAAAA 638
BSNT_00794___ 639 AGGCTTTTTTAATGCAGTCAGATTCGGCATCGGCATGTATGGCCTTCGCC 688
||||||.|||||.||.||..|.|||||||||.|.|||||.||.|||||.|
RBAM_004980__ 639 AGGCTTCTTTAACGCGGTTCGTTTCGGCATCAGTATGTACGGGCTTCGTC 688
BSNT_00794___ 689 CGTCTGCTGACATTTCGGA--CGAGATACCGTTTCAGCTGCGTCCGGCAT 736
|.|||||||||| ||..| |||.||.||||||||..|....|||||.|
RBAM_004980__ 689 CTTCTGCTGACA--TCCAAAGCGAAATTCCGTTTCAATTAAAGCCGGCTT 736
BSNT_00794___ 737 TTACCCTGCATTCGACGCTG-----TCGCATGTCAAACTGATCAGAAAAG 781
||.|.|||| ||.||| ||.|||||.|||..||||.|.||||
RBAM_004980__ 737 TTGCGCTGC-----ACTCTGTTTTATCCCATGTGAAAAAGATCCGCAAAG 781
BSNT_00794___ 782 GCGAGAGCGTCAGCTACGGAGCCGAGTACACAGCAGAAAAAGA-CACATG 830
|.||.||||||||||||||.||....||.||.|||||.||.|| || |||
RBAM_004980__ 782 GGGAAAGCGTCAGCTACGGCGCAACATATACGGCAGAGAAGGATCA-ATG 830
BSNT_00794___ 831 GATCGGGACGGTGCCTGTAGGCTATGCGGACGGCTGGCTCCGAAAATTGA 880
||||||.|||||.||..|.||||||||||||||.||||||||.||..|||
RBAM_004980__ 831 GATCGGAACGGTTCCCATCGGCTATGCGGACGGGTGGCTCCGCAAGCTGA 880
BSNT_00794___ 881 AAGGGACTGACATCCTTGTGAAG------GGAAAACGCTTGAAAATTGCC 924
..|| .||.|| ||||..| ||.|||||..||||.||.||.
RBAM_004980__ 881 GCGG----CACGTC--TGTGCTGATCGGCGGCAAACGGATGAACATCGCG 924
BSNT_00794___ 925 GGCCGAATTTGCATGGACCAATTTATGGTGGAGCTGGATCAGGAATATCC 974
||..||||.||||||||.|||||.|||||.||..|.|||||....|||||
RBAM_004980__ 925 GGAAGAATCTGCATGGATCAATTGATGGTCGAATTAGATCAATCTTATCC 974
BSNT_00794___ 975 GCCGGGCACAAAAGTCACATTAATTGGCCGGCAGGGGGATGAATATATTT 1024
|||||||||.||||||||.||.||.|||.|.|||..|||.|||...||..
RBAM_004980__ 975 GCCGGGCACCAAAGTCACTTTGATCGGCAGCCAGAAGGAAGAAACGATCA 1024
BSNT_00794___ 1025 CCATGGATGAGATTGCAGGAAGGCTCGAAACCATTAACTATGAGGTGGCC 1074
|.||||||||.||.||.||..||||.|..||.|||||.||.|||||..|.
RBAM_004980__ 1025 CGATGGATGAAATCGCGGGGCGGCTTGGGACGATTAATTACGAGGTCCCT 1074
BSNT_00794___ 1075 TGTACAATAAGTTCCCGTGTTCCCCGTATGTTTTTGGAAAATGGGAGTAT 1124
|||||.||.||||||||.|||||||||||||||||||||||||.||||||
RBAM_004980__ 1075 TGTACCATTAGTTCCCGCGTTCCCCGTATGTTTTTGGAAAATGAGAGTAT 1124
BSNT_00794___ 1125 AATGGAAGTAAGAAATCCTTTATTGCAGGTAAATACAAGCAATTAA 1170
||||||||||||||||||||||.||||.|..|||||||||||.||.
RBAM_004980__ 1125 AATGGAAGTAAGAAATCCTTTACTGCAAGATAATACAAGCAAGTAG 1170
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