Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00791 and RBAM_004950
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:34
# Commandline: needle
# -asequence dna-align/BSNT_00791___ydcA.1.9828.seq
# -bsequence dna-align/RBAM_004950___ydcA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00791___ydcA-RBAM_004950___ydcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00791___ydcA-RBAM_004950___ydcA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00791___ydcA
# 2: RBAM_004950___ydcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 616
# Identity: 462/616 (75.0%)
# Similarity: 462/616 (75.0%)
# Gaps: 32/616 ( 5.2%)
# Score: 1663.5
#
#
#=======================================
BSNT_00791___ 1 ATGTTTATACGGACTGAAAATTTTCAAACATTTATCAGGCTTTACCCCGT 50
|||||||||||.||.||||||||.||.||.||||||||.|.|||.||.|.
RBAM_004950__ 1 ATGTTTATACGAACGGAAAATTTCCAGACTTTTATCAGACGTTATCCGGC 50
BSNT_00791___ 51 TGTCACCTTTATATTGGCTTTGCAAGCTGTTC-TCTGGCTGTTTTTTTCA 99
.||||.||.|||.|||||..||||.|| |||| |.|||||| |||||||
RBAM_004950__ 51 CGTCAGCTGTATCTTGGCGCTGCAGGC-GTTCTTGTGGCTG--TTTTTCA 97
BSNT_00791___ 100 CTTCCTGCC----CATTCAGTCGTGTTATGGAGGGATACCGTCACAGGCT 145
.| .|||| |||||.|||.||.|.|||...|||.|.||.||.||||
RBAM_004950__ 98 GT--ATGCCGCTTCATTCCGTCATGATGTGGTCAGATGCTGTGACCGGCT 145
BSNT_00791___ 146 ATAATCTA-GGTG-----TCGCAAACGGTGAATGGTGGCGGCTGATCACA 189
||||| || ||.| ||| ||.|||||||||||||||.|.|||
RBAM_004950__ 146 ATAAT-TACGGCGTTTCCTCG-----GGAGAATGGTGGCGGCTGGTGACA 189
BSNT_00791___ 190 CCGATTTTGCTGCACGCCGGTTTCACACATCTGCTGTTTAATTCCATGTC 239
|||||.||..|.|||||...||||||.||.||..|||||||.||||||||
RBAM_004950__ 190 CCGATGTTTTTACACGCGAATTTCACTCACCTTTTGTTTAACTCCATGTC 239
BSNT_00791___ 240 CATCTTTTTATT--TGCCCCAGCTTTGGAACGCATGCTGGGAAAAGCGCA 287
..|||||||||| .|||||.|||| ||.|..|||||.|||||||..|.
RBAM_004950__ 240 TCTCTTTTTATTCGCGCCCCCGCTT--GAGCAGATGCTCGGAAAAGTCCG 287
BSNT_00791___ 288 TTTTCTTCTTGTATACGCCGGCTCCGGCATCATCGGCAATATTGGCACTT 337
||||||..||||.|||..||..||.|||||||||||||||||.|||||.|
RBAM_004950__ 288 TTTTCTGATTGTGTACATCGCATCGGGCATCATCGGCAATATCGGCACGT 337
BSNT_00791___ 338 ATGTTACAGAGCCGCTTGATTACGTGCATGTCGGTGCTTCAGGCGCAATT 387
||.||.|.||.|||||||||||.|||||||||||.||.||.|||||.||.
RBAM_004950__ 338 ATCTTGCCGAACCGCTTGATTATGTGCATGTCGGCGCATCCGGCGCGATC 387
BSNT_00791___ 388 TTCGGGCTATTCGGCGTGTACCTGTTTATGGTTCTTTTTCGCAATGAGCT 437
|||||.||.|||||||||||..|||||.||..|.||||.|||||.|||||
RBAM_004950__ 388 TTCGGACTTTTCGGCGTGTATGTGTTTTTGACTGTTTTCCGCAAGGAGCT 437
BSNT_00791___ 438 AATAGGGCAGGAGCATTCCAAAATGATCATCACACTGCTCGCAT--TTGC 485
.||.||.|.|||.||.||.||||||||.||.||.||||| .|| |.||
RBAM_004950__ 438 GATCGGCCGGGATCAGTCGAAAATGATTATGACCCTGCT--TATCATCGC 485
BSNT_00791___ 486 CGTTCTCATGTCATTTATCAACTCCAATATTAACATGATGGCTCATCTGT 535
.||.||...|.|.|||||||||||.|||||||||||.|||||.|||.|||
RBAM_004950__ 486 GGTGCTGTCGACGTTTATCAACTCTAATATTAACATTATGGCGCATTTGT 535
BSNT_00791___ 536 TTGGACTATGC-GGCGGGTTTCTTCTTTCGTTTTTGTGTGTGCAAAAAAA 584
|.||||| .|| |||||.|||.|.|||||.|||||.||.|||||..||||
RBAM_004950__ 536 TCGGACT-GGCAGGCGGATTTTTGCTTTCCTTTTTATGCGTGCAGCAAAA 584
BSNT_00791___ 585 AGAGCGGCGGTATTAA 600
|.||||||||||||||
RBAM_004950__ 585 AAAGCGGCGGTATTAA 600
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