Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00783 and RBAM_004900
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:33
# Commandline: needle
# -asequence dna-align/BSNT_00783___ddl.1.9828.seq
# -bsequence dna-align/RBAM_004900___ddl.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00783___ddl-RBAM_004900___ddl.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00783___ddl-RBAM_004900___ddl.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00783___ddl
# 2: RBAM_004900___ddl
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1101
# Identity: 849/1101 (77.1%)
# Similarity: 849/1101 (77.1%)
# Gaps: 51/1101 ( 4.6%)
# Score: 3293.0
#
#
#=======================================
BSNT_00783___ 1 TTGAAAACAAGTCTAGGATTAGTGTACGGAGGAAAGTCGGCAGAACATAA 50
||||||||.||||||||.||.|||||.||
RBAM_004900__ 1 ---------------------GTGTACGGCGGAAAGTCAGCCGAACACAA 29
BSNT_00783___ 51 TGTTTCCCTGCAGACGGCTCTGGCTGTAATCAAAGCGCTAAATACTGAGA 100
|||.||.||||||||.||..|.|||||||..||||||||.||||||||||
RBAM_004900__ 30 TGTATCGCTGCAGACAGCATTAGCTGTAACAAAAGCGCTTAATACTGAGA 79
BSNT_00783___ 101 AGTTTGATATACATCCGATTTATATAACAGAAAAAGGCGAATGGGTAAGA 150
||||||||||||||||||||||.||.||.||||||||.||||||..||||
RBAM_004900__ 80 AGTTTGATATACATCCGATTTACATCACTGAAAAAGGAGAATGGCAAAGA 129
BSNT_00783___ 151 GGCGCCCGTT--TAACTGAGCCTGTTTCAAATGTGAAAATGCTTCAATTT 198
| |||||.| |.||||||||.|||||.||.||||||||||||||..|.
RBAM_004900__ 130 G--GCCCGCTGCTGACTGAGCCGGTTTCCAACGTGAAAATGCTTCAGCTG 177
BSNT_00783___ 199 GAGCAA---GGAGGCAGTGCTTTTTCTCCAGCTGCCCTGAACCAGGAGAT 245
||.||| ||.|..|| |||..|||.|.|.||..||||||.|||.||
RBAM_004900__ 178 GAACAAAACGGTGAAAG---TTTCGCTCTATCAGCATTGAACCGGGAAAT 224
BSNT_00783___ 246 GTTTCCGCAGGAAGCGTCAC---AGCAAAATGAAGCC-ATCGACGTCGTA 291
|||||| .||||||||.| | |.|||.|..||| |||||.||||||
RBAM_004900__ 225 GTTTCC---TGAAGCGTCGCCTGA-CGAAAAGGCGCCGATCGATGTCGTA 270
BSNT_00783___ 292 TTCCCGCTCCTCCACGGACCGAATGGAGAAGACGGTACGATCCAGGGAAT 341
||.|||||.||||||||||||||.||.||||||||.||.||.|||||..|
RBAM_004900__ 271 TTTCCGCTTCTCCACGGACCGAACGGTGAAGACGGCACCATTCAGGGTCT 320
BSNT_00783___ 342 GCTTGAGCTGTTGAACATTCCTTATGTCGGCAACGGAGTGCTTGCTTCCT 391
|||.||..||.|||||.|||||||||||||||||||.||||||||.||.|
RBAM_004900__ 321 GCTGGAATTGCTGAACGTTCCTTATGTCGGCAACGGGGTGCTTGCATCAT 370
BSNT_00783___ 392 CAGCTGGGATGGATAAAGTTGTCATGAAACATTTATTTGCGCAGGCTGGC 441
||||.||.|||||||||||..|||||||.|||||.||.||.||.||.||.
RBAM_004900__ 371 CAGCCGGCATGGATAAAGTCATCATGAAGCATTTGTTCGCTCAAGCGGGG 420
BSNT_00783___ 442 CTTGCTCAGGCTAAATACGCAGCTTTCCTTAAGAAA-GACTGGACTCGTT 490
|||.|.|||||.||.|||||.||||| |||||.||| |||||||..|...
RBAM_004900__ 421 CTTCCGCAGGCGAAGTACGCCGCTTT-CTTAAAAAAGGACTGGAAACAGA 469
BSNT_00783___ 491 CTCCGAAAGAAAGCTG---TGAGCAGGTTGAACAGGAATTAGGCTACCCT 537
|.||| ||.||||| ..|||||||||||.||||..|.||.||.||.
RBAM_004900__ 470 CGCCG---GACAGCTGCTTACAGCAGGTTGAAAAGGAGCTGGGATATCCG 516
BSNT_00783___ 538 TGCTTCGTAAAACCGGCGAACCTCGGCTCAAGTGTTGGAATCAGCAAATG 587
||||||||.|||||||||||||||||.|||||.||.||||||||||||||
RBAM_004900__ 517 TGCTTCGTCAAACCGGCGAACCTCGGATCAAGCGTCGGAATCAGCAAATG 566
BSNT_00783___ 588 CCGAAACCGTGAAGAACTGCAAAAAGCGTTTGAGCTTGCTTTCCAATATG 637
|||||||||||||||.||..|||||||.||.||.||.|||||..|.||||
RBAM_004900__ 567 CCGAAACCGTGAAGAGCTTGAAAAAGCCTTCGAACTGGCTTTTGAGTATG 616
BSNT_00783___ 638 ACCGCAAAGTCGTCGTTGAAGAAGGAATTAACGGCCGCGAGATTGAGATC 687
||||.|||.|.||.||.|||||||||||...||||.|.||.||.||.|||
RBAM_004900__ 617 ACCGGAAAATTGTGGTGGAAGAAGGAATCGCCGGCAGAGAAATCGAAATC 666
BSNT_00783___ 688 GGCGTTCTTGGAAATGACGATCCTAAATGCTCTGTTGTGGGAGAAATCGC 737
|||||.||.|||||||||||.||.||||||||.|..||.||.||||||||
RBAM_004900__ 667 GGCGTACTCGGAAATGACGAACCGAAATGCTCCGCCGTCGGTGAAATCGC 716
BSNT_00783___ 738 ACCGAAGACAGATTTCTACGATTACAAAGCGAAATATGAGGATGGAGATA 787
.|||||.||.||.||.|||||||||||||||||||||||.||.||.||.|
RBAM_004900__ 717 GCCGAAAACCGACTTTTACGATTACAAAGCGAAATATGAAGACGGCGACA 766
BSNT_00783___ 788 CTGATCTGATGATTCC--GGCAATTGTGACCGATGAGGAATACGCTACAA 835
|.|||.|.|||||||| .|||| |||||.|||||..||||.||...||
RBAM_004900__ 767 CGGATTTAATGATTCCCGCGCAA--GTGACGGATGAACAATATGCGGAAA 814
BSNT_00783___ 836 TCAGTGATATGGCGATCAAGGCGTTTAAAGCGATCGATGGTTCAGGACTC 885
||||.||.||||||||.||.||.||.||||||||.||.||.|||||.||.
RBAM_004900__ 815 TCAGCGAGATGGCGATTAAAGCCTTCAAAGCGATTGACGGCTCAGGCCTT 864
BSNT_00783___ 886 GTCAGAGCGGACTTTTTCCTGACAGCTGACGGCGAAGTTCTGATCAATGA 935
|||.|.||.||.||.||||||||...||||||..||||.||.||.||.||
RBAM_004900__ 865 GTCCGCGCCGATTTCTTCCTGACCAATGACGGTCAAGTGCTCATTAACGA 914
BSNT_00783___ 936 AGTCAACACAATGCCTGGCTTTACACCTTTCAGCATGTTCCCGCTGCTCT 985
|||.|||||||||||.||||||||.||.||||||||||||||||||||.|
RBAM_004900__ 915 AGTGAACACAATGCCGGGCTTTACGCCATTCAGCATGTTCCCGCTGCTTT 964
BSNT_00783___ 986 GGAAAGAAGCCGGAGTGGAATATGCTGACCTGATTGAACAGCTTGTGGAG 1035
||||||||||.||.||.||.||...|||.|||||.||||||||.||.|||
RBAM_004900__ 965 GGAAAGAAGCAGGCGTAGATTACAGTGATCTGATCGAACAGCTGGTTGAG 1014
BSNT_00783___ 1036 CTTGCAAAAGAACGCCACGCTGAAAAACAATTGATTAAGCATACATTCTA 1085
||.||||||||||||||.||.||||||||..|||||||.||||||||.||
RBAM_004900__ 1015 CTGGCAAAAGAACGCCATGCCGAAAAACAGCTGATTAAACATACATTTTA 1064
BSNT_00783___ 1086 A 1086
|
RBAM_004900__ 1065 A 1065
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