Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00772 and RBAM_004830

See Amino acid alignment / Visit BSNT_00772 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:33
# Commandline: needle
#    -asequence dna-align/BSNT_00772___ydbK.1.9828.seq
#    -bsequence dna-align/RBAM_004830___ydbK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00772___ydbK-RBAM_004830___ydbK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00772___ydbK-RBAM_004830___ydbK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00772___ydbK
# 2: RBAM_004830___ydbK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 775
# Identity:     543/775 (70.1%)
# Similarity:   543/775 (70.1%)
# Gaps:          14/775 ( 1.8%)
# Score: 1769.5
# 
#
#=======================================

BSNT_00772___      1 TTGTCTAAATTAATTTGGAATGAACATATGAAACTTTTTAATCGGAAGGT     50
                     .|||.||||||.|....||||||.|||||||||||.|||||.||.||.||
RBAM_004830__      1 ATGTTTAAATTGACAGCGAATGAGCATATGAAACTCTTTAACCGAAAAGT     50

BSNT_00772___     51 CACTTTGGTTTCCCTTATCCTGATGGCTGTCTTTCAATTCTTCATGGC-A     99
                     |.|.||.||..|.||.||.||||||||.||..|.|||||..|.||||| .
RBAM_004830__     51 CTCATTAGTGGCGCTGATTCTGATGGCCGTTCTCCAATTTATTATGGCGC    100

BSNT_00772___    100 TTGATCATTAAACGGATTGTCATCAGTGCCGGAACAGATGAAAACTTCAT    149
                     ||| |||||||||||.|||||||||||.|||||||.|||||.||.|||||
RBAM_004830__    101 TTG-TCATTAAACGGCTTGTCATCAGTTCCGGAACGGATGAGAATTTCAT    149

BSNT_00772___    150 CGGCTATTTATCGTATACACCGAGCCTGAACATTTTGCTGCAGGCTTTAA    199
                     |||||||.|..||||..|.||..|.|||||.|||.||||..||||.||||
RBAM_004830__    150 CGGCTATATGGCGTACGCGCCCGGGCTGAATATTCTGCTTGAGGCATTAA    199

BSNT_00772___    200 CGATCGTAATTGCAGCAACAATTGTTT-CGATGGAATTTGATAAAAAGAC    248
                     |||||||.||.||.|||||.||..||| ||.| |||||||||||.||.||
RBAM_004830__    200 CGATCGTGATCGCGGCAACGATCATTTCCGCT-GAATTTGATAAGAAAAC    248

BSNT_00772___    249 GATCAAATTTTTGCTCATTCGTCCGGTTAAAC----GCCAAAAGGTCTTT    294
                     |||||||||||||.|.||.||.|||||.||.|    ||     ||..|||
RBAM_004830__    249 GATCAAATTTTTGTTAATCCGCCCGGTAAAGCGGGAGC-----GGATTTT    293

BSNT_00772___    295 TG-GTCAAAATTAATCACAGTCGTGATGGTCAGCTTCTATTTGTATTTGG    343
                     || .||.|||.|.||.||.||..|..||||||||||.||..|||||..||
RBAM_004830__    294 TGTATCTAAACTCATTACCGTATTTTTGGTCAGCTTGTACCTGTATGCGG    343

BSNT_00772___    344 CATACTACATTCTGGCATTATTATTCGGTCTCGTGTTTTTTGGCACATCG    393
                     |.|||||.||||||.|..|..|.|||||..|.|..||.||.|||...|||
RBAM_004830__    344 CGTACTATATTCTGTCTCTGCTGTTCGGCATGGCTTTCTTCGGCGTGTCG    393

BSNT_00772___    394 GTGACTGCGGAATCAAAGACATTGCTGGTCAACACTTTGGCGCTGATCGG    443
                     |||||..|.||||||..|||..|.||..|.|||||..||....|.|||||
RBAM_004830__    394 GTGACATCTGAATCAGGGACGCTTCTTATGAACACCCTGAAAGTAATCGG    443

BSNT_00772___    444 GTCAAACTGGCTTGAAGCTGTAATGATGGGATTATTCGGGCTGCTTTGTT    493
                     ..|.||||||.|.||.||..|...|||||.||..||.||..||.|.||||
RBAM_004830__    444 CACGAACTGGGTCGAGGCGTTTGCGATGGCATGCTTTGGCTTGTTGTGTT    493

BSNT_00772___    494 CTTCGCTGTTCCGCAACAGCGCGGTAGCAGTTGTTGTTTCTTTTGTCGTT    543
                     ||||..|.|||||.||||||||....||.||..||.|.||.|||.||||.
RBAM_004830__    494 CTTCTGTATTCCGAAACAGCGCAACGGCCGTCATTTTGTCATTTATCGTG    543

BSNT_00772___    544 TTATACGGAGCGAGTACACTTGTTCAGCTCATGAAGTTGTTTGAAAACAA    593
                     .|.||.||.||.|...|||||||...|.|.|||..|.|.||..|||||||
RBAM_004830__    544 CTGTATGGCGCAAAATCACTTGTGACGATTATGTCGCTCTTCCAAAACAA    593

BSNT_00772___    594 GTGGGGCAGCTTTTTGCTTTTTGCGAACACAGACTTTACGCAATACGGAA    643
                     .|||||.||.|||.||||.||.||.||.||.|||.|.||||||||....|
RBAM_004830__    594 ATGGGGAAGTTTTCTGCTGTTCGCAAATACTGACCTGACGCAATATATGA    643

BSNT_00772___    644 GCGGAGAGACAGCGTTGTTTTCAGGCATGACGCCATTGTTCTCAATTGGA    693
                     ||||.|.||.|.||.|||||.|.||.||||||||.||.||.||....||.
RBAM_004830__    644 GCGGGGCGAAACCGCTGTTTGCGGGAATGACGCCGTTATTTTCCGCAGGC    693

BSNT_00772___    694 ATTCTCATCATACATGCCATATTCTTCATCGTTGTTGGCTGGTGGTGCTT    743
                     |||.||||.||.|||..|.||||||||.|.|..||.|..||||||.||||
RBAM_004830__    694 ATTATCATTATCCATATCGTATTCTTCTTAGCCGTCGCTTGGTGGAGCTT    743

BSNT_00772___    744 CTGTAAACGGGATGTTCGGGTCTAA    768
                     .||.|||||.|||||||||||.|||
RBAM_004830__    744 TTGCAAACGCGATGTTCGGGTATAA    768


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