Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00768 and RBAM_004810
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:33
# Commandline: needle
# -asequence dna-align/BSNT_00768___ydbI.1.9828.seq
# -bsequence dna-align/RBAM_004810___ydbI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00768___ydbI-RBAM_004810___ydbI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00768___ydbI-RBAM_004810___ydbI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00768___ydbI
# 2: RBAM_004810___ydbI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1067
# Identity: 813/1067 (76.2%)
# Similarity: 813/1067 (76.2%)
# Gaps: 31/1067 ( 2.9%)
# Score: 3028.0
#
#
#=======================================
BSNT_00768___ 1 ATGGCCGCTTTAGTTAAATTTTTTCAGCACCCGGGAGTAAGGCGTTTCTC 50
|||||.|||.|..||||||||||||||||.|||||.||.||.|||||.||
RBAM_004810__ 1 ATGGCGGCTATTTTTAAATTTTTTCAGCATCCGGGTGTCAGACGTTTTTC 50
BSNT_00768___ 51 CATCTTTGTCGTGTTAACTGGTGTGTTATATCTATTTAAGAGCATGATCA 100
|.|.|||.|.||.||.|||||.||||||..|.||||....||.|||||.|
RBAM_004810__ 51 CGTTTTTCTTGTTTTGACTGGGGTGTTAGTTGTATTCCGAAGTATGATTA 100
BSNT_00768___ 101 ACTTAATATTGCTTACCTTTATTTTCACATTTCTAATGGATCGTTTGGAG 150
|.||.||.||||||||.||||||||.||.|||||.||||||||..|||||
RBAM_004810__ 101 ATTTGATTTTGCTTACGTTTATTTTTACTTTTCTGATGGATCGGCTGGAG 150
BSNT_00768___ 151 CTTGTCGTGCGGCA-GT-TTGTAAGCCGGTTCTTCCGCGTGAGCCAGCGG 198
..||||.|.||||| || ||| |.||..||.|||||..|.||||||.||
RBAM_004810__ 151 ACTGTCATCCGGCACGTGTTG--AACCATTTTTTCCGGATCAGCCAGAGG 198
BSNT_00768___ 199 GTTGTCATTA-CGTTTCTTTACATTTTGCTGGCTGT-GCTGCTTACAGTC 246
||.|||||.| ||||| |.||.|||..||||||||| |..|| .||.|||
RBAM_004810__ 199 GTGGTCATCACCGTTT-TATATATTGCGCTGGCTGTCGGGGC-GACTGTC 246
BSNT_00768___ 247 GGGGGCTTTGTGTTTTATCCGGTCGTCGCGGCGCAGATCCAGCAGCTGGT 296
||.||||||||.|||||.|||.|.||.||...||||||..|.||||||.|
RBAM_004810__ 247 GGAGGCTTTGTCTTTTACCCGATTGTTGCCAAGCAGATTGAACAGCTGAT 296
BSNT_00768___ 297 TAAGCAGATTAAACATATTGCGTATCACCCTGACAGCATCCCTTTCTTTG 346
|||||||||.||.||.||.||||||||.||.||...|||.||.||.|.||
RBAM_004810__ 297 TAAGCAGATCAAGCACATCGCGTATCATCCCGATGTCATTCCGTTTTATG 346
BSNT_00768___ 347 ATGAGATCACCAGTGTCTTCGGAGATATTAACATCAGTTCATATGTCAAA 396
|||||||..|.||.||.|||||.|||||.||.|||.||||.|||||.|||
RBAM_004810__ 347 ATGAGATATCGAGCGTGTTCGGCGATATCAATATCGGTTCCTATGTAAAA 396
BSNT_00768___ 397 GAAGGCTTCAATGTAGTGTATACGTATCTGGCCGATATCAGCACATTCGG 446
|||||.||.||||||.|||||||.||..||||||||||||||||.|||||
RBAM_004810__ 397 GAAGGTTTTAATGTACTGTATACATACTTGGCCGATATCAGCACTTTCGG 446
BSNT_00768___ 447 CTTGCAGGTCGTGATGGCGCTCATTCTCAGCATGTTTTTCTTATTTGAGA 496
.|||||||||||||||.|.||.||||||||||||||||||.|.||.||||
RBAM_004810__ 447 TTTGCAGGTCGTGATGTCACTGATTCTCAGCATGTTTTTCCTGTTCGAGA 496
BSNT_00768___ 497 AAAAACGGCTTTCTGAATTCATGGCGAAATTT-AAAACGAGCAAACTGAG 545
||||.|||||..|.||.||.|||...|||||| |..|| |||||.|||..
RBAM_004810__ 497 AAAAGCGGCTCACGGAGTTTATGAAAAAATTTCAGCAC-AGCAAGCTGTC 545
BSNT_00768___ 546 GGTCTTTTATGAGGAAATTGCTTTTTTTGGAAGCAAATTTGCAAGAACGT 595
.||.|||||..|.|||.||||||.|||.||.|||||.|||||.|||||.|
RBAM_004810__ 546 TGTTTTTTACTACGAACTTGCTTATTTCGGCAGCAAGTTTGCGAGAACAT 595
BSNT_00768___ 596 TCGGCAAGGTGCTCGAGGCTCAATTTATCATTGCGCTCGTCAACTGTATT 645
|||||||.|||||.||.||.||||||||.||.|||||.||.||||||||.
RBAM_004810__ 596 TCGGCAAAGTGCTTGAAGCCCAATTTATTATCGCGCTGGTGAACTGTATC 645
BSNT_00768___ 646 CTGACGTTTATCGCGCTTTG--GATTATGCATTTTCCGCAGCTGTTTGGG 693
||.||.||.|| |||.||| ||||.|||||||||||||||||||.||.
RBAM_004810__ 646 CTCACCTTGAT--CGCATTGGCGATTCTGCATTTTCCGCAGCTGTTCGGC 693
BSNT_00768___ 694 CTTTCGATTATGGTGTTCTTCCTTGGGTTGATCCCTGTAGCAGGCGTCGT 743
||.||.||.|||||.||.|||||.|||.|.||.||.||.||.||.||.||
RBAM_004810__ 694 CTGTCAATCATGGTCTTTTTCCTCGGGCTCATTCCCGTTGCGGGTGTGGT 743
BSNT_00768___ 744 CATTTCCCTGATTCCGCTCAGCATTATCGCCTACAGCACTGGCGGCGGAA 793
.|||||.||.||||||||||||||.|||||.||.|..||.|||||||...
RBAM_004810__ 744 GATTTCGCTCATTCCGCTCAGCATCATCGCGTATACGACGGGCGGCGCTG 793
BSNT_00768___ 794 TGTATGTGCTCTACATTGTCCTTGTCATATTCGCCATTCATGCGATCGAA 843
.||||||..|||||||.||.||.|||||.||||.|||.||||||||.||.
RBAM_004810__ 794 CGTATGTCATCTACATCGTGCTGGTCATTTTCGTCATCCATGCGATTGAG 843
BSNT_00768___ 844 ACATATTTCTTAAATCCGAAGCTGATGTCGGCGAAAACAGAGCTGCCAAT 893
||.||.|||.|.||||||||.||||||||.||||||||.||.|||||.||
RBAM_004810__ 844 ACGTACTTCCTTAATCCGAAACTGATGTCAGCGAAAACGGAACTGCCGAT 893
BSNT_00768___ 894 CTTTTTCACCTTCACTGTACTCATTTTCTCTGAACACTTTTTCGGCATTT 943
||||||.|||||.||.||.||.||||||||.|||||.||.||||||||||
RBAM_004810__ 894 CTTTTTTACCTTTACAGTTCTGATTTTCTCGGAACATTTCTTCGGCATTT 943
BSNT_00768___ 944 GGGGTTTAATTATCGGGATTCCGATCTTTGTGTTTCTCCTTGATATTCTG 993
||||.||.||||||||.||||||||.||||||||.||.||.|||||||||
RBAM_004810__ 944 GGGGCTTGATTATCGGAATTCCGATTTTTGTGTTCCTGCTCGATATTCTG 993
BSNT_00768___ 994 GATGTCACCAACAAGGAAGATAGGTCTAAA---GGAC----CCCGAGAGA 1036
||||||..|||.||.|||||.|.|...||| |||| |||| ||
RBAM_004810__ 994 GATGTCGTCAATAATGAAGAGAAGGAAAAAAACGGACCGGTCCCG---GA 1040
BSNT_00768___ 1037 ATAGCGATAAAAAGTAG 1053
..||..||||
RBAM_004810__ 1041 TAAGACATAA------- 1050
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