Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00765 and RBAM_004780
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:32
# Commandline: needle
# -asequence dna-align/BSNT_00765___dctS.1.9828.seq
# -bsequence dna-align/RBAM_004780___dctS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00765___dctS-RBAM_004780___dctS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00765___dctS-RBAM_004780___dctS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00765___dctS
# 2: RBAM_004780___dctS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1650
# Identity: 1272/1650 (77.1%)
# Similarity: 1272/1650 (77.1%)
# Gaps: 69/1650 ( 4.2%)
# Score: 4854.0
#
#
#=======================================
BSNT_00765___ 1 ATGAACAAAAAGAAGCTCTCAATCCGTTGGAAAATCACGAT-CTTATCCT 49
||||..|||||.||||||.|.|||||.|||||||||||.|| ||| ||.|
RBAM_004780__ 1 ATGACGAAAAAAAAGCTCACCATCCGCTGGAAAATCACCATACTT-TCGT 49
BSNT_00765___ 50 ATATACTCGTCATTTTCTCCTTTTTGATCGGCGGCATTGTGCTCATCGGC 99
||||..||||..||||..|.||||||||||.||||||.|||||.||||||
RBAM_004780__ 50 ATATCGTCGTGCTTTTTACTTTTTTGATCGTCGGCATCGTGCTGATCGGC 99
BSNT_00765___ 100 AACATTCAGCATACAGAGGAGCGGGAGCTGAAAAAGCGGCTGATGAATAC 149
||.||||||||||||||||||||.|||||||||||.||||||||||||||
RBAM_004780__ 100 AATATTCAGCATACAGAGGAGCGCGAGCTGAAAAAACGGCTGATGAATAC 149
BSNT_00765___ 150 GGCCCGGACGGTGTCAGAGATGACAGAAGTGAAAGAAGCCTTGGCGCGAA 199
.||.||||||||.||.||||||||.||.||.|||...|||.|.|.||..|
RBAM_004780__ 150 CGCGCGGACGGTATCTGAGATGACCGATGTCAAACGCGCCCTCGAGCAGA 199
BSNT_00765___ 200 AAAAACAAACAGAAGCTGTTCGCCATGCGGTTGAAGAAATCAGGATGATT 249
|||||||||..||||..||.|||||||||||.||||||||.|||||.||.
RBAM_004780__ 200 AAAAACAAAGGGAAGACGTGCGCCATGCGGTCGAAGAAATAAGGATCATC 249
BSNT_00765___ 250 AATGAAGCAGACTATATTGTCGTCATGGATATGAATCACATCCGATATAC 299
||||||||.|||||.||.|||||||||||||||.||||.|||||.|||.|
RBAM_004780__ 250 AATGAAGCGGACTACATCGTCGTCATGGATATGGATCATATCCGCTATTC 299
BSNT_00765___ 300 GCATCCTGTCAGCACAAGCATCGGCAAAAAA----TCAGAAGGTGCAGAC 345
.|||||.||||||||||..||||| ||| |||...||||..|||
RBAM_004780__ 300 ACATCCCGTCAGCACAATGATCGG----AAAGCGTTCAAGGGGTGAGGAC 345
BSNT_00765___ 346 GAGGAGGCAGCGTTTGCGGAGCACATTTATTTCTCTGAAGCAAAGGGCGA 395
||.|..||.|||||.||.||||||||||||||.||.|||||||||||.||
RBAM_004780__ 346 GAAGCCGCGGCGTTCGCCGAGCACATTTATTTTTCCGAAGCAAAGGGAGA 395
BSNT_00765___ 396 GATCGGCACGGCGGTTCGCGCTTTTTATCCGGTTAAGGATCAAGACTTGA 445
.||||||||.||.||.||||||||||||||..||||.||||..||.||||
RBAM_004780__ 396 AATCGGCACCGCCGTCCGCGCTTTTTATCCCATTAAAGATCGGGATTTGA 445
BSNT_00765___ 446 ACCAAATAGGCGTGGTGCTTGTCGGAAAAACGCTGCCGGGGATCGCTGAC 495
|.||.||.||.||.||.||.|.|||.|||||||||||.||..|||.|||.
RBAM_004780__ 446 ATCAGATCGGGGTCGTTCTGGCCGGTAAAACGCTGCCCGGATTCGGTGAA 495
BSNT_00765___ 496 ATCCTGCTTCATTTAAAGCGTGATATCGCCTTCATCGTTGTGCTGACACT 545
||.||.|||||..|.||.|.|||.||....||.||||||.|||||.|.||
RBAM_004780__ 496 ATTCTTCTTCAGCTGAAACATGAAATACTGTTTATCGTTCTGCTGGCGCT 545
BSNT_00765___ 546 CGGCTTCGGCCTTGCTGGTTCCTTTTTGCTGGCCCGCCATATCAAAAAAC 595
|||.|||||.||.||.||.||||||||||||||||||||.||||||||||
RBAM_004780__ 546 CGGGTTCGGACTGGCCGGCTCCTTTTTGCTGGCCCGCCACATCAAAAAAC 595
BSNT_00765___ 596 AAATGTTTCAGCTTGAACCCCATGAGATTGTCCGAATGTATGAAGAACGG 645
||||||||..|||.||.|||||||||||.||..||||||||||.||||||
RBAM_004780__ 596 AAATGTTTTGGCTGGAGCCCCATGAGATCGTGAGAATGTATGAGGAACGG 645
BSNT_00765___ 646 ACAGCGACGTTTCACTCGATGAATGAAGGGGTGATTGCCATTGACAATC- 694
||.||.||||||||.|||||||||||.||.||.||.||.||.||.||||
RBAM_004780__ 646 ACCGCTACGTTTCATTCGATGAATGAGGGCGTCATCGCGATCGATAATCA 695
BSNT_00765___ 695 GTCTCATCATTACGATTTTCAATGAAAAAGCGAAACAGATCTTTGAAGTG 744
|..||| |||.||.|||||.||||||||||||||.|||||.||..|.||
RBAM_004780__ 696 GCATCA-CATCACCATTTTTAATGAAAAAGCGAAGCAGATATTCAATGT- 743
BSNT_00765___ 745 CAG---GGGGATCTGATCGGCAAGGTGATTTGGGAGGTTCTCAAGGATTC 791
||| .|.|| |.||| ||||.|.||||.|||||.||..|.||.|||||
RBAM_004780__ 744 CAGACAAGAGA-CCGAT-GGCAGGCTGATCTGGGACGTGTTAAAAGATTC 791
BSNT_00765___ 792 GCGCCTGCCCGAAATCGTGGAGCGGAACAAAGCAGTTTATAATGAAGAAA 841
||||||.||.||.|||||.|||||||||..|||.||.|||||||||||||
RBAM_004780__ 792 GCGCCTCCCTGAGATCGTCGAGCGGAACCGAGCCGTATATAATGAAGAAA 841
BSNT_00765___ 842 TCCGTGTCAGCGGAAAAGTCATCATGAGCAGCAGAATTCCGATCGTCATG 891
|||..|||||||||||.||.||||||||||||||||||||||||||||||
RBAM_004780__ 842 TCCAAGTCAGCGGAAAGGTGATCATGAGCAGCAGAATTCCGATCGTCATG 891
BSNT_00765___ 892 AAGAAAAAAGTGATCGGCGCCGTCGCGATTTTTCAGGACAGAACGGAAGC 941
||.||.||.||.|||||.||||||||.||||||||||||||.||||||||
RBAM_004780__ 892 AAAAAGAAGGTCATCGGAGCCGTCGCCATTTTTCAGGACAGGACGGAAGC 941
BSNT_00765___ 942 GGCCAAGATGGCAGAGGAATTGACTGGTGTCAGAAACTTTGTGGAGGCGC 991
.||.||.|||||.||.|||.||||.|||||.|.|||.|||||.||.||||
RBAM_004780__ 942 TGCGAAAATGGCGGAAGAACTGACAGGTGTGAAAAATTTTGTCGATGCGC 991
BSNT_00765___ 992 TCCGTGTCCAAAACCATGAGCATATGAATAAGCTGCACACGATAGCCGGT 1041
||.|.||||||||.|||||.||||||||.|||||.|||||.||.||.||.
RBAM_004780__ 992 TCAGAGTCCAAAATCATGAACATATGAACAAGCTTCACACCATCGCGGGA 1041
BSNT_00765___ 1042 CTCATCCAGCTGGGGAAATCTGAAAAAGCCTTGCAGCTTGCATTCCAGGC 1091
||.||.|||||.||.|||||.||||||||..|.||||||||.||..|||.
RBAM_004780__ 1042 CTGATTCAGCTCGGAAAATCAGAAAAAGCGCTCCAGCTTGCTTTTAAGGA 1091
BSNT_00765___ 1092 GTCAACTGAGCAGGAAAATGTGACTGAATTTCTGCACCGCTCGATTCAAA 1141
.|||.|.||.|..||||..||.||.||.|||||.||.|...|.|||||.|
RBAM_004780__ 1092 ATCATCAGAACTAGAAAGCGTCACCGATTTTCTTCATCAGGCCATTCAGA 1141
BSNT_00765___ 1142 ATGACGCAGCGGCAGGCCTTCTATTAAGTAAAATCAGAAGGGGAAGAGAG 1191
|||||||.|||||.||.||.||.|||||.|||||||.|||.||||.||||
RBAM_004780__ 1142 ATGACGCTGCGGCGGGACTGCTGTTAAGCAAAATCAAAAGAGGAAAAGAG 1191
BSNT_00765___ 1192 CTCGGCATTGCTGTTCATATAGATGAAAACAGCAGTCT-TCAGCAATTTC 1240
||.||||||.||||..|.||.|||||||||||||||.| ||.|| |||||
RBAM_004780__ 1192 CTTGGCATTTCTGTGAAAATTGATGAAAACAGCAGTTTCTCGGC-ATTTC 1240
BSNT_00765___ 1241 CCGAGCATATTGATCAGCATGATATTGTCGTGCTTTTGGGGAATCTGATT 1290
|.||||||.|.||.|||||||||||||||||.||..|.||.|||.|.|||
RBAM_004780__ 1241 CGGAGCATGTCGACCAGCATGATATTGTCGTCCTGCTCGGCAATTTAATT 1290
BSNT_00765___ 1291 GAAAATGCCTTCGGCTCATTTGAAAC--CGTTCAATCTGAAGACAAACGA 1338
||||||||.||||||.||||.||||| ||..|| |.||.|||||||..
RBAM_004780__ 1291 GAAAATGCGTTCGGCGCATTCGAAACAGCGGACA--CGGAGGACAAACAT 1338
BSNT_00765___ 1339 ATTGACATTAGTATCGAACAAACAGATGATATCCTTGCTATTTTAATAGA 1388
||||||||.||||||||.||||..|||||..|.||||||||.||||||||
RBAM_004780__ 1339 ATTGACATCAGTATCGAGCAAAATGATGAAGTGCTTGCTATATTAATAGA 1388
BSNT_00765___ 1389 AGATAACGGCTGCGGAATTGATCCG----GCACATATGCCTCGCCTTTAC 1434
|||.|||||..||||.||| |||| |||| ||.||.||||||||.
RBAM_004780__ 1389 AGACAACGGAAGCGGGATT--TCCGATCAGCAC--ATCCCGCGCCTTTAT 1434
BSNT_00765___ 1435 GACAAAGGTTTTACGGTCAATAAAACTGGCGGCACAGGCTATGGCCTGTA 1484
||||||||.|||||.|||||||||||.||.||.||.||.||.|||.||||
RBAM_004780__ 1435 GACAAAGGGTTTACCGTCAATAAAACGGGAGGAACGGGATACGGCTTGTA 1484
BSNT_00765___ 1485 TCTAGTGAAACAAATCATAGACAAA-GGATCGGGCGCGATAGAAGTTGAT 1533
.||.||.|||||||||.|.|||||| |||| |||| ||.||
RBAM_004780__ 1485 CCTCGTCAAACAAATCGTCGACAAAGGGAT-GGGC----------TTTAT 1523
BSNT_00765___ 1534 TC------ACATGCGG-AG---CAGGGGACATCTTTTTCTATCGTTTTTC 1573
|| |||..||| || |||||.||..|.||||||||..|.||||
RBAM_004780__ 1524 TCAGGTCGACACACGGCAGGGACAGGGAACGGCATTTTCTATTTTATTTC 1573
BSNT_00765___ 1574 CAATGAAGGGGGAGGAA---------GCACAGCATG--GCTCGTAA---- 1608
|.||||||||||||||| |.|||.||.| |||..|.|
RBAM_004780__ 1574 CGATGAAGGGGGAGGAATCATTCGATGGACATCAAGGTGCTGCTTATTGA 1623
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