Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00763 and RBAM_004760

See Amino acid alignment / Visit BSNT_00763 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:32
# Commandline: needle
#    -asequence dna-align/BSNT_00763___ydbD.1.9828.seq
#    -bsequence dna-align/RBAM_004760___ydbD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00763___ydbD-RBAM_004760___ydbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00763___ydbD-RBAM_004760___ydbD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00763___ydbD
# 2: RBAM_004760___ydbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 823
# Identity:     658/823 (80.0%)
# Similarity:   658/823 (80.0%)
# Gaps:           2/823 ( 0.2%)
# Score: 2618.0
# 
#
#=======================================

BSNT_00763___      1 ATGTTTAAGCACACAAAAATGCTGCAGCATCCTGCTAAACCAGATCGTCC     50
                     |||||||..||.||.||||..|||||||||||.||||||||.||||||||
RBAM_004760__      1 ATGTTTACACATACGAAAAAACTGCAGCATCCGGCTAAACCGGATCGTCC     50

BSNT_00763___     51 AGATCCATTATTCGCTAAAAAAATGCAAGAAATTTTAGGCGGGCAATTCG    100
                     .||.||..|.|||||.|||||.|||||.|||||||||||.||.||||.||
RBAM_004760__     51 TGACCCGCTGTTCGCCAAAAAGATGCAGGAAATTTTAGGGGGACAATACG    100

BSNT_00763___    101 GAGAAATTTCAGTTGCCATGCAGTACTTATTTCAAGGCTGGAACACAAGA    150
                     |.|||||.||.||.||||||||.||.||.||.|||||.|||||.|||.|.
RBAM_004760__    101 GGGAAATATCCGTCGCCATGCAATATTTGTTCCAAGGATGGAATACACGG    150

BSNT_00763___    151 GGAAATGAAAAATACAAGGA-CTTGCTGATGGATACGGCAACCGAGGAGC    199
                     ||.|||||||||||.||||| ||| |||||||||||.||.||.||.||..
RBAM_004760__    151 GGCAATGAAAAATATAAGGATCTT-CTGATGGATACCGCGACGGAAGAAA    199

BSNT_00763___    200 TCGGGCATGTTGAAATGATTGCAACAATGATTGCCAGACTTCTTGAGGAT    249
                     ||||.|||||.||||||||.||.||.||||||||.|||||..|.||.||.
RBAM_004760__    200 TCGGCCATGTCGAAATGATCGCGACGATGATTGCGAGACTGTTAGAAGAC    249

BSNT_00763___    250 GCACCTCTTGATCAGCAGGAAAAAGCTGCTGAAGATCCGGTCATCGGCTC    299
                     ||.||.||.|...|||||||||||||.|||||.||||||||||||||.||
RBAM_004760__    250 GCCCCGCTGGCAGAGCAGGAAAAAGCGGCTGATGATCCGGTCATCGGGTC    299

BSNT_00763___    300 CATCCTAGGCGGCATGAACCCTCACCATGCGATTGTATCAGGACTTGGCG    349
                     |||..|||||||||||||.||.||.|||||||||||.||||||||.||||
RBAM_004760__    300 CATTTTAGGCGGCATGAATCCGCATCATGCGATTGTCTCAGGACTCGGCG    349

BSNT_00763___    350 CCATGCCTGAAAGCAGTACAGGCGTACCTTGGAGCGGCGGTTATATCGTA    399
                     |.|||||.||.|||||.||.|||||.||.|||||||..||.||||||||.
RBAM_004760__    350 CAATGCCGGAGAGCAGCACGGGCGTTCCGTGGAGCGCAGGCTATATCGTC    399

BSNT_00763___    400 GCAAGCGGAAACCTGCTGGCAGACTTCCGCGCCAACCTGAATGCGGAATC    449
                     ||||||||||||||.||||||||||||||||||||.|||||.||.|||||
RBAM_004760__    400 GCAAGCGGAAACCTTCTGGCAGACTTCCGCGCCAATCTGAACGCCGAATC    449

BSNT_00763___    450 TCAGGGCCGTCTGCAGGTCGCACGCCTGTTTGAAATGACGGATGACAAAG    499
                     .||.||..|.||.||.|||||||||||||.|||||||||.|||||.||||
RBAM_004760__    450 ACAAGGAAGGCTTCAAGTCGCACGCCTGTATGAAATGACCGATGATAAAG    499

BSNT_00763___    500 GCGTCAAAGATATGCTCAGCTTCCTGCTGGCGCGTGACACGATGCACCAA    549
                     ||||.|||||||||||||||||..|..||||.||.||.||.|||||.|||
RBAM_004760__    500 GCGTGAAAGATATGCTCAGCTTTTTATTGGCCCGCGATACCATGCATCAA    549

BSNT_00763___    550 AATCAATGGCTTGCCGCCATTAAAGAATTAGAAGCACAGGAAGGTCCGGT    599
                     ||.|||||||||||.|||||||||||||||||||.|||||||||||||.|
RBAM_004760__    550 AACCAATGGCTTGCGGCCATTAAAGAATTAGAAGAACAGGAAGGTCCGAT    599

BSNT_00763___    600 TGTGCCGGGTACATTCCCGAAAGCGCTCGAAAAACAAGAGTTCTCACATC    649
                     .||.||....|||||||||||.||.||.||||||||....|||||.|||.
RBAM_004760__    600 CGTTCCTTCCACATTCCCGAAGGCACTGGAAAAACAGTCATTCTCCCATA    649

BSNT_00763___    650 AGCTTATCAATTTCTCTGAAGGCGAAGAAAGCGCCCAGCAAAACTGGCTG    699
                     |||||||..|||||||.||.||||.|||||||||..|.|||||.||||||
RBAM_004760__    650 AGCTTATTCATTTCTCAGATGGCGGAGAAAGCGCTGAACAAAATTGGCTG    699

BSNT_00763___    700 AATGAAAAAGCGCCGGACGGAGAAGCCTTTGAATATGTGAAAGAAGCAAA    749
                     ||.||||.||||||||||||||||.|.||||||||.|..||.|||.|.||
RBAM_004760__    700 AAGGAAACAGCGCCGGACGGAGAACCATTTGAATACGAAAAGGAACCGAA    749

BSNT_00763___    750 AACGTTTGGAGAAAAACCGGAGTTAAAACCAACACCGCCTTTTGTTCATA    799
                     |.||...||.||||.|.|..||.|..|.||....|||||.|.|||.||||
RBAM_004760__    750 AGCGCACGGCGAAATAGCTAAGCTGGATCCTGTCCCGCCGTATGTCCATA    799

BSNT_00763___    800 ATACACTTCCGGGACGCGAATAA    822
                     |.||.|||||.||||||||.|||
RBAM_004760__    800 ACACGCTTCCCGGACGCGAGTAA    822


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