Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00730 and RBAM_004400
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:30
# Commandline: needle
# -asequence dna-align/BSNT_00730___ydaB.1.9828.seq
# -bsequence dna-align/RBAM_004400___ydaB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00730___ydaB-RBAM_004400___ydaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00730___ydaB-RBAM_004400___ydaB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00730___ydaB
# 2: RBAM_004400___ydaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1555
# Identity: 1123/1555 (72.2%)
# Similarity: 1123/1555 (72.2%)
# Gaps: 83/1555 ( 5.3%)
# Score: 3892.5
#
#
#=======================================
BSNT_00730___ 1 ATGGAAACATTACAGCATCTGATTCTGCATGACATGCCGAATAGCGAAGA 50
|||||.|||||||||||||||||||||||||||||..|.|||||||||||
RBAM_004400__ 1 ATGGAGACATTACAGCATCTGATTCTGCATGACATTTCAAATAGCGAAGA 50
BSNT_00730___ 51 AATAGAGGCTGTAAAAAGCGGAGACCATACACTGACATA----TAAAGGT 96
.||.||.||||||||||||||.|..|||||.|||||.|| .||
RBAM_004400__ 51 GATCGAAGCTGTAAAAAGCGGTGCGCATACCCTGACCTACGCGGAA---- 96
BSNT_00730___ 97 TACCGTAAACGGATTAATCAGCTGGCGAATGCCATGCTTCAAAAAGGAAT 146
||.||.|||||.||.||.|||||.||..|.||..|.|||.|.||||||||
RBAM_004400__ 97 TATCGAAAACGAATCAACCAGCTTGCACAAGCGCTTCTTGATAAAGGAAT 146
BSNT_00730___ 147 TCAAAAGGGCGACCGTGTTGCATTGCTTTGCAAAAACGGCCATCCCGCAT 196
..||||.||||||.|.||.||..|||||||||||||||||||..|.||||
RBAM_004400__ 147 AAAAAAAGGCGACAGAGTGGCGATGCTTTGCAAAAACGGCCACGCGGCAT 196
BSNT_00730___ 197 CAACTGTTATGTTCGCCGCGCTTGAAATAGGTGCTGTTGTCGTACCTGTC 246
|.|.|||.|||||.||.||.||.|||||.||.||.||.||.||.||.|||
RBAM_004400__ 197 CCATTGTCATGTTTGCGGCACTCGAAATCGGCGCGGTGGTTGTGCCGGTC 246
BSNT_00730___ 247 AGCTGGCAGCTGAAACCATATGAAATGACAGGCATTTTAAAAGCAAGTGA 296
||||||||..|.|.|||.||.|||||||.||||||||||..|||..||||
RBAM_004400__ 247 AGCTGGCAATTAACACCTTACGAAATGAAAGGCATTTTAGCAGCCTGTGA 296
BSNT_00730___ 297 ACCGAAAGCGATGTTTTACGGAGCGGAGTTTAAAGAGATACTGGATGAAG 346
|||||||||..|.||||||.|..|.||.|||||||||||..||||.||||
RBAM_004400__ 297 ACCGAAAGCTGTTTTTTACAGCACTGAATTTAAAGAGATTATGGAAGAAG 346
BSNT_00730___ 347 TTCTACCTGAATTG---TCCTCACTGTGTGTAACAATG------GAAACA 387
|.||.||||...|| ||.||.|| ||| |.|| ||.||.
RBAM_004400__ 347 TGCTTCCTGCGCTGGTATCTTCTCT-----TAA-ACTGAAGGTCGAGACC 390
BSNT_00730___ 388 GGAACAGCTTACGAAACATCTGCTGAATTTGAAGCGCTGT-TTG-CAGGT 435
|||||||||...||.|||.|..||.|.||||| ||||.| ||| ||||.
RBAM_004400__ 391 GGAACAGCTGCGGAGACAACGCCTCAGTTTGA--CGCTTTATTGACAGGC 438
BSNT_00730___ 436 CCTGATCATTTGCCAGAGAC-------GGAAATGGTTTCACCTG---ATG 475
.||| ||.|.|.|| .||||.|||.| ||| |.|
RBAM_004400__ 439 TCTG-------GCGAAATACCGGATGTCGAAACGGTGT---CTGAAAACG 478
BSNT_00730___ 476 ATACAGCACTTCTGATGTTTACATCTGGAACAACGGGAAACCCGAAAAGA 525
||||.|||.|.|||||||||||.||.||.|||||.||.||.||||||.|.
RBAM_004400__ 479 ATACGGCATTGCTGATGTTTACCTCAGGTACAACCGGCAATCCGAAACGC 528
BSNT_00730___ 526 TGCATGATTACACATGGCGGCATATACAGATACGTTAAAAAATCCAACA- 574
||||||||.||.||.|||||||||||||..||.|| |||..|.|||
RBAM_004400__ 529 TGCATGATCACTCACGGCGGCATATACAACTATGT----AAACGCGACAT 574
BSNT_00730___ 575 --GCTCAATAGCAC-----GTATGAAGGGCCTTCGTTTTCTCGCGTGCCA 617
|| ||| ||| |.|||.||....|.||.||..|.||.|||||
RBAM_004400__ 575 TGGC---ATA-CACGGGGAGAATGCAGCATGTCCGCTTCTTAGCATGCCA 620
BSNT_00730___ 618 TCCGATTTATCATACGAGTGCGCTCATTTGCATCATGCTTGGAACG-TTT 666
|||||.|||.||||||||.|||.|.||.|||...|||.|.||.||| |..
RBAM_004400__ 621 TCCGAATTACCATACGAGCGCGATTATCTGCCAGATGGTCGGCACGATGA 670
BSNT_00730___ 667 GCAGAA--ACAACCTTTGTGTTTACAAAGGATCAAGATCCTGTTCACATG 714
||.||| |||..|.||.|| |||.|..||||.||.|||||..|.|..
RBAM_004400__ 671 GCGGAACGACATTCATTATG---ACAGACAATCAGGACCCTGTGGAAAAC 717
BSNT_00730___ 715 CTGAAGGTCATTGAAGAAGAGAAAATTCAGACCGTGATGGCTCTTCCTGT 764
.|||||.||||.|||.||||.||||||||.|||.|.|||||.||.||.||
RBAM_004400__ 718 TTGAAGCTCATCGAAAAAGAAAAAATTCAAACCATCATGGCGCTGCCAGT 767
BSNT_00730___ 765 GTTTTACACGTATTTGCTTGAGGCGTGGGAAACGCACCAAACTGACTTAT 814
.|.||.|||.||..||||..|.||.||||||||||||||.||||||.|.|
RBAM_004400__ 768 CTATTTCACATACCTGCTGAAAGCATGGGAAACGCACCAGACTGACATGT 817
BSNT_00730___ 815 CTTCACTTGTTATTTTAATGACAGGCGGAACAAAAGTGCCGAGCAGCCTA 864
||||..|.|||..|.|.|||||.||.||.|||||.|||||.||||||||.
RBAM_004400__ 818 CTTCTATCGTTTATATGATGACGGGAGGCACAAAGGTGCCAAGCAGCCTG 867
BSNT_00730___ 865 ATCC-GCCGCTATCTTGATATTGGCATTCCGCTCGCGCATGGCTATGGAA 913
|||| ||.| |||||.||.||.||||||||||||..|||.||.||.||||
RBAM_004400__ 868 ATCCAGCAG-TATCTCGACATCGGCATTCCGCTCATGCACGGATACGGAA 916
BSNT_00730___ 914 GCACTGAGGCTTGGGGCATCAGCACATGGACGCCTGATATGGGAATGGAT 963
||||.||.||.|||||.||||||.|.||||..||..|.||||||||||||
RBAM_004400__ 917 GCACGGAAGCGTGGGGTATCAGCTCTTGGAATCCGCAAATGGGAATGGAT 966
BSNT_00730___ 964 AAAGCGGCATCTGCAGGAAAACCTGTGGCAGGTGTTAAAGTCAAAGTGGA 1013
|||||.||.||.||.||.|||||..|||.||..||..|.|||...||.|.
RBAM_004400__ 967 AAAGCCGCTTCCGCGGGTAAACCGATGGAAGAAGTGGATGTCCGCGTTGT 1016
BSNT_00730___ 1014 AGATCCTCTGACCGGAGAAGAACTTCCTCAAGGAGAAATCGGCGAAATCG 1063
||||||....||.||.||||..|||||.|||||...||||||.|||.|||
RBAM_004400__ 1017 AGATCCGGACACAGGTGAAGTCCTTCCGCAAGGCTCAATCGGAGAAGTCG 1066
BSNT_00730___ 1064 TTGT-TCATACTCCATTCTTATTTAAAGGCTATGAAG---AC-AATCCTG 1108
.||| .|| |.|||.||.|||||.||||||||.|||| || || |
RBAM_004400__ 1067 CTGTGACA-AGTCCGTTTTTATTCAAAGGCTACGAAGGTAACGAA----G 1111
BSNT_00730___ 1109 AAGCAACAGCG-AAAGTGCTGCAAAATGGATGGTTTAGAACCGGAGATTC 1157
|||||||| || |||||||||.||.|.||.|||||....|||||.|||||
RBAM_004400__ 1112 AAGCAACA-CGAAAAGTGCTGAAAGACGGCTGGTTCCATACCGGCGATTC 1160
BSNT_00730___ 1158 AGGATATGTAGATGAAGATGGCTTTATTTTCATCACGGGACGCTACAAGG 1207
.||||||||.||||||||.||.|||||.||.|||||.|||||.||.||.|
RBAM_004400__ 1161 CGGATATGTGGATGAAGACGGATTTATCTTTATCACCGGACGTTATAAAG 1210
BSNT_00730___ 1208 ATGTCATTATTTACGGAGGCGATAACGTCTATCCTGATCAGGTTGAAGAA 1257
|||||||.||.|||||.|||||.||..|.|||||.||.|||.|||||||.
RBAM_004400__ 1211 ATGTCATCATCTACGGCGGCGACAATATTTATCCCGACCAGATTGAAGAG 1260
BSNT_00730___ 1258 GTTATCCAGCAGATCCCGGGAATCCTTGAAACGGCTGTGGTCGGTATTCC 1307
||.||.|||||..|.|||||.||.||.||||||||.||.|||||||||||
RBAM_004400__ 1261 GTCATTCAGCAAGTGCCGGGCATTCTCGAAACGGCGGTTGTCGGTATTCC 1310
BSNT_00730___ 1308 AGACCCGCTTTACGGTGAAAAACCGAAAGCTTTTATCGTGAAAAATGGCG 1357
.||.|||||||||||||||||.||||||||.||.|||||||.|||.|||.
RBAM_004400__ 1311 TGATCCGCTTTACGGTGAAAAGCCGAAAGCGTTCATCGTGACAAACGGCA 1360
BSNT_00730___ 1358 GCCAGCGCATCACGGAAGAGGATGTCATCGCATTTTGTAAAGAACGCCTG 1407
|..|..||.|.||.|||||.||.||.|.|..|||...|.|||||||.||.
RBAM_004400__ 1361 GAGAAGGCCTGACAGAAGAAGAAGTGACCCGATTCCTTCAAGAACGTCTT 1410
BSNT_00730___ 1408 TCCGCTTACAAAATACCTGAAGTTGAATTTGTTAACGAACTGCCGAAAAA 1457
.||||.|..|||||.||.|||.||||.||.||.|.||||||.||||||||
RBAM_004400__ 1411 GCCGCCTTTAAAATTCCGGAAATTGAGTTCGTCAGCGAACTTCCGAAAAA 1460
BSNT_00730___ 1458 CAACCTTGGCAAGGTGAAAAAAGACGTCCTGCGCAATCAGGCTGTACATT 1507
|||||||||.||.||||.|||||||||.||.|||||.||.||.||.|.||
RBAM_004400__ 1461 CAACCTTGGAAAAGTGAGAAAAGACGTGCTCCGCAAACAAGCGGTCCGTT 1510
BSNT_00730___ 1508 CATAA 1512
|||||
RBAM_004400__ 1511 CATAA 1515
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