Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00723 and RBAM_004360

See Amino acid alignment / Visit BSNT_00723 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:29
# Commandline: needle
#    -asequence dna-align/BSNT_00723___yczJ.1.9828.seq
#    -bsequence dna-align/RBAM_004360___yczJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00723___yczJ-RBAM_004360___yczJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00723___yczJ-RBAM_004360___yczJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00723___yczJ
# 2: RBAM_004360___yczJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 323
# Identity:     216/323 (66.9%)
# Similarity:   216/323 (66.9%)
# Gaps:          37/323 (11.5%)
# Score: 779.0
# 
#
#=======================================

BSNT_00723___      1 ATGGTCAGAGAGGCAGCAATGCTTCACATTAAAGAAGGCCTTGAACAAGA     50
                     |||.|||||||.|||||.|||||..|..|.||||||||.|||||....||
RBAM_004360__      1 ATGATCAGAGAAGCAGCCATGCTGTATGTAAAAGAAGGTCTTGAGGGGGA     50

BSNT_00723___     51 GTTTGAGGATGCATTCCGGCAAGCGGCGCCGATTATTTCCGGCATGAAGG    100
                     .||.||.||.||||||||.|..||||.|||||||||..|.||||||||.|
RBAM_004360__     51 ATTCGAAGAGGCATTCCGCCGGGCGGAGCCGATTATCGCGGGCATGAAAG    100

BSNT_00723___    101 GCTATATCACTCACTCGTTATCAAAATGCATGGAGGAAACTCATAAATAT    150
                     |.|||.|..|.||.||.||.||.|||||.|||||..|.||.|||||||||
RBAM_004360__    101 GTTATCTGTCCCATTCCTTGTCCAAATGTATGGAAAAGACGCATAAATAT    150

BSNT_00723___    151 CTGCTTCTTGTGGAGTGGGAAACACTTGAGAACCATACGGAAGGCTTTCG    200
                     .||||.||||||||.|||||.|||.|.||..|.|||||..||||||||||
RBAM_004360__    151 TTGCTGCTTGTGGAATGGGAGACATTAGAAGATCATACAAAAGGCTTTCG    200

BSNT_00723___    201 CGGTTCTTCAGAGTATCAAGAGTGGAAAGCCTTGCTTCATCGATTCTATA    250
                     |||.||..|.||.|||||.||.|||||||||||.||.||.||.||.|||.
RBAM_004360__    201 CGGATCGCCGGAATATCAGGAATGGAAAGCCTTACTGCACCGTTTTTATT    250

BSNT_00723___    251 CCCCGTTCCCGACG--GTCGAGCATTTTCAGGATGTGTAA----------    288
                     |.||.||.||  ||  ||.|||||||||||||||.|.|.|          
RBAM_004360__    251 CACCATTTCC--CGTTGTGGAGCATTTTCAGGATCTATCAGACTCAGATC    298

BSNT_00723___    288 -----------------------    288
                                            
RBAM_004360__    299 GCGTGAAGCGTAAAACCGATTAA    321


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