Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00721 and RBAM_004350

See Amino acid alignment / Visit BSNT_00721 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:29
# Commandline: needle
#    -asequence dna-align/BSNT_00721___yczI.1.9828.seq
#    -bsequence dna-align/RBAM_004350___yczI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00721___yczI-RBAM_004350___yczI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00721___yczI-RBAM_004350___yczI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00721___yczI
# 2: RBAM_004350___yczI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 254
# Identity:     186/254 (73.2%)
# Similarity:   186/254 (73.2%)
# Gaps:          16/254 ( 6.3%)
# Score: 676.0
# 
#
#=======================================

BSNT_00721___      1 TTGTTTCGGATTTTTAAAATGTCTTTTGCGGTTATCATTATTATACTGGC     50
                     |||.|.||....||.|||.||||..|.|||.|..|.|||||||||||.||
RBAM_004350__      1 TTGCTGCGCGCCTTAAAACTGTCACTCGCGATGCTGATTATTATACTTGC     50

BSNT_00721___     51 G-----CTTATTGCTTTTAACTATACGGAACACACCTCTGTTATCCAATC     95
                     |     |     ||.||||..|||.|||||||.||||||||.||.||..|
RBAM_004350__     51 GGCCGCC-----GCATTTACGTATGCGGAACATACCTCTGTCATACAGCC     95

BSNT_00721___     96 GGTCATGCTCGTCTTTCTTGGTGCGGTCATGTTTATGCAAGGGCTTGAAG    145
                     |||.||||||||.|||||.||||||||||||||.||.||.|||||.||.|
RBAM_004350__     96 GGTTATGCTCGTGTTTCTCGGTGCGGTCATGTTCATTCAGGGGCTGGAGG    145

BSNT_00721___    146 AACGCAAA---AAAGAAAATGACGGCTCAGGCGCTTTTAATATTTATACC    192
                     ||   |||   ||||||||.||||||||.||....||.|||||.||||||
RBAM_004350__    146 AA---AAACGGAAAGAAAACGACGGCTCCGGGAAATTCAATATCTATACC    192

BSNT_00721___    193 GCCGTTTTTGTATGGTCTGTCTCCCTTATCGGTTTTACACTTCATATTAT    242
                     |||||||||||||||||..|||||.|.|||||||||||.|||||....||
RBAM_004350__    193 GCCGTTTTTGTATGGTCAATCTCCTTAATCGGTTTTACGCTTCACGCGAT    242

BSNT_00721___    243 ATAA    246
                     .|.|
RBAM_004350__    243 CTGA    246


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