Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00717 and RBAM_004330
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:29
# Commandline: needle
# -asequence dna-align/BSNT_00717___kipR.1.9828.seq
# -bsequence dna-align/RBAM_004330___kipR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00717___kipR-RBAM_004330___kipR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00717___kipR-RBAM_004330___kipR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00717___kipR
# 2: RBAM_004330___kipR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 776
# Identity: 571/776 (73.6%)
# Similarity: 571/776 (73.6%)
# Gaps: 49/776 ( 6.3%)
# Score: 2094.0
#
#
#=======================================
BSNT_00717___ 1 ATGCAGAATAAAAATAAAACCGTAGTCAAATCTATGGCGCTGCTTAATTT 50
|||.|.||.|||||.|||||.||..|||||||.||||..||||||.||||
RBAM_004330__ 1 ATGGAAAACAAAAACAAAACTGTCATCAAATCAATGGAACTGCTTCATTT 50
BSNT_00717___ 51 GTTTTTGCATAAACCAAGCCTAACCTTAAGTGAACTGGTGTCGCTGACGG 100
.|||.||..|.||||.|||||.|.|||||.|||.|||||.||.||..|||
RBAM_004330__ 51 ATTTCTGACTGAACCGAGCCTGAGCTTAAATGAGCTGGTTTCTCTATCGG 100
BSNT_00717___ 101 GAATGCCGAAGACCTCTGTTCACCGGATGGTCAGCTCCTTGGAGGAAATG 150
.|||||||||||||||.|||||||||||||..|||||..|||||||||.|
RBAM_004330__ 101 AAATGCCGAAGACCTCGGTTCACCGGATGGCAAGCTCGCTGGAGGAAACG 150
BSNT_00717___ 151 GGGTTCCTCAGTCGGGATGCGTCCGGCGCTTATTCGCTGGGATTGGTGTT 200
||.||.||||..||||..|||..||||..||||..|||.||..||.|.||
RBAM_004330__ 151 GGATTTCTCACCCGGGCAGCGGACGGCCGTTATCAGCTTGGTCTGATCTT 200
BSNT_00717___ 201 TTTGGAATTCGGACAGCTTGTCGCTGACAGGCTGGATATCAGAAAAATAG 250
|||..|||||||.|||||.|||.||||..|.|||||.|||||.|||||||
RBAM_004330__ 201 TTTACAATTCGGCCAGCTCGTCTCTGAACGTCTGGACATCAGGAAAATAG 250
BSNT_00717___ 251 CGAAACCGGTGATGGAAGAGCTGTGCCGGGAAGTGGATGAGGCCGTGCAG 300
|.||||||.|.|||||||||||||||||.|||||||||||||||||.|||
RBAM_004330__ 251 CCAAACCGATTATGGAAGAGCTGTGCCGCGAAGTGGATGAGGCCGTTCAG 300
BSNT_00717___ 301 TTGATCATGAGGGACGGCAATGAAGCGATATACGTTGAGAAAATAGAAGG 350
.||||||||||||||||..|||||||.||.|||||.||.|||||.|||||
RBAM_004330__ 301 CTGATCATGAGGGACGGAGATGAAGCCATTTACGTCGAAAAAATTGAAGG 350
BSNT_00717___ 351 GACACAGACTGTGCGGCTGTATACGGCGATCGGCAGGCGTTCCCCCCTAT 400
.||.||.||.||.||.|||||||||||.||||||.|.||.||.||.||.|
RBAM_004330__ 351 CACCCAAACCGTCCGCCTGTATACGGCAATCGGCCGCCGGTCGCCGCTGT 400
BSNT_00717___ 401 ACGCGGGAGCGTGCGCCAGAAGCATTCTGTCCTTTCTTCCCCGTGAAGAA 450
||||||||||||||||||||||||||||.||.|||||.||....||.||.
RBAM_004330__ 401 ACGCGGGAGCGTGCGCCAGAAGCATTCTATCGTTTCTGCCAAAAGAGGAG 450
BSNT_00717___ 451 ATCGAAGCATACAT----CAAACAAA-----CCGAGCTCATTTCGATTGG 491
||.||..||||||| .|.||||| ||| |.||.|.
RBAM_004330__ 451 ATTGACACATACATTCAGAAGACAAAGCTTGCCG---------CAATCGC 491
BSNT_00717___ 492 CTCCGGAACGATTACCGATCCCGAAAAACTGCTTCAGGAGATT----GAT 537
|||.||.|||||.||.||||..|...||||||||||....||| |||
RBAM_004330__ 492 CTCAGGCACGATGACGGATCGGGCTGAACTGCTTCAATCCATTGAAAGAT 541
BSNT_00717___ 538 GCCTCTGTGCAAAATGGCTATACTGTCAGCTATTCAGAGCTCGAAAACTA 587
||| |.|||...||.|||||..||||||||||.||..|.|||.|.||
RBAM_004330__ 542 -CCT---TACAATCAGGTTATACGATCAGCTATTCGGAATTAGAAGATTA 587
BSNT_00717___ 588 TACGGCGGCGATCGGCGCCCCGATCTTTAATCA------TAAGCGCCAAG 631
.||||||||||||||.||.|||||.||.||||| |||| |
RBAM_004330__ 588 CACGGCGGCGATCGGGGCGCCGATTTTCAATCACGAAGGTAAG------G 631
BSNT_00717___ 632 TGGCAGCCGGCATTAGCATTGCAGGCTTTGAAGCGAGATTTACAGAAGAC 681
||||.|||||.||.|||||.||.|||||.|||||..|.|||.||||.|||
RBAM_004330__ 632 TGGCTGCCGGAATCAGCATCGCCGGCTTCGAAGCCCGTTTTTCAGAGGAC 681
BSNT_00717___ 682 AGGCTGCCCTATTTAACAGAAAAGGTGAAGGACGCCGCTTTACAG---AT 728
||||||||.||||||||.||||||||.||...|||||| |||| ||
RBAM_004330__ 682 AGGCTGCCGTATTTAACCGAAAAGGTCAAAACCGCCGC---ACAGCATAT 728
BSNT_00717___ 729 TTCAAGA-AAAATAGGATATACATAA 753
||| .|| |||.|.||.|||..|
RBAM_004330__ 729 TTC-TGAGAAATTGGGTTATTGA--- 750
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