Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00716 and RBAM_004320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:29
# Commandline: needle
# -asequence dna-align/BSNT_00716___kipA.1.9828.seq
# -bsequence dna-align/RBAM_004320___kipA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00716___kipA-RBAM_004320___kipA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00716___kipA-RBAM_004320___kipA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00716___kipA
# 2: RBAM_004320___kipA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1056
# Identity: 739/1056 (70.0%)
# Similarity: 739/1056 (70.0%)
# Gaps: 84/1056 ( 8.0%)
# Score: 2531.5
#
#
#=======================================
BSNT_00716___ 1 TTGAGCATGAAAGTATTAAAGCCCGGACTGCTCACAACGGTTCAGGATAT 50
.||||.||||||||..||||||||||.||..|.||.|||||||||||.|.
RBAM_004320__ 1 ATGAGTATGAAAGTGGTAAAGCCCGGTCTCTTGACGACGGTTCAGGACAC 50
BSNT_00716___ 51 AGGCAGAACGGGTTACCAAAAATACGGCGTTCTGGCCAGCGGCGCTATGG 100
.||..|.|||||.||.||.||||||||.||.||||..||||||||.||||
RBAM_004320__ 51 GGGGCGGACGGGATATCAGAAATACGGTGTGCTGGGAAGCGGCGCAATGG 100
BSNT_00716___ 101 ACACGGTATCACTGCGCATTGCCAAT-TTGTTGATAGGAAACGGTGAAAA 149
|.|||.|.|||||||||||.|||||| ||.||| ..|||||....|||||
RBAM_004320__ 101 ATACGATCTCACTGCGCATCGCCAATCTTCTTG-CCGGAAATCAAGAAAA 149
BSNT_00716___ 150 TGAAGCAGGTCTCGAAATAACGATGATGGGGCCCGGTCCGTCGTTTCATT 199
.||.||.||.||.|||||.|||.|.|||||||||||.||.||.|||.|.|
RBAM_004320__ 150 AGAGGCGGGACTGGAAATTACGCTCATGGGGCCCGGGCCTTCCTTTGAAT 199
BSNT_00716___ 200 TTTCAAAACAGACACTG-----ATTGCTGTGACAGGGGCGGACTTCACGC 244
|||||.||| ||| |||||.||.||.||.||.||.|||.|.|
RBAM_004320__ 200 TTTCAGAAC-----CTGCGGTTATTGCCGTCACGGGAGCTGATTTCGCCC 244
BSNT_00716___ 245 TGCGTATTAATGACGAGGAAGCGCCTTTATGGAAGCCTGTGCTCATTAAG 294
|.|.||||||||..|||...||.|||.|||||||.||.||..|.||.|||
RBAM_004320__ 245 TTCATATTAATGGGGAGCCCGCCCCTCTATGGAAACCGGTTTTGATAAAG 294
BSNT_00716___ 295 GAAAACAGCACAGTCAGCTTTGGCCCCTGCAAACTCGGCAGCCGTGCTTA 344
|||||||||...|||...||.||.||.|||||..|.||.|||||.|||||
RBAM_004320__ 295 GAAAACAGCGTCGTCTCATTCGGGCCGTGCAAGATGGGGAGCCGCGCTTA 344
BSNT_00716___ 345 TTTGGCGGCAGCCGGCGGCATCGAGGTGCCTGCCGTCATGGATAGTAAAA 394
|.|.||.|..||.||.||..|.||.|||||.|||||||||||.||.||||
RBAM_004320__ 345 TCTCGCAGTCGCGGGTGGATTTGACGTGCCCGCCGTCATGGAAAGCAAAA 394
BSNT_00716___ 395 GCACATACGTCAGAGGAAGCATCGGCGGACTTCATGGCAGAGCGCTTCAA 444
||||.||.|||||||...|.||||||||..||...||.||||||||.|||
RBAM_004320__ 395 GCACGTATGTCAGAGCGGGGATCGGCGGTTTTTGCGGAAGAGCGCTGCAA 444
BSNT_00716___ 445 AAAGAAGATGAACTGAACATTGGAGAGATGTCAGCTC------------- 481
|||||.|||||.||| |.||||
RBAM_004320__ 445 AAAGATGATGAGCTG----------------CCGCTCGGCCGTATGACGC 478
BSNT_00716___ 482 ---TTTCGCAAACCATC-----CTTTCCCGCTTAAGTTCGCTGCTT--GG 521
.||||.||.|.||| ||.|| |.|| ||.|.||| ||
RBAM_004320__ 479 CATGTTCGGAATCAATCGCGTACTGTC-----TGAG--CGATTCTTTCGG 521
BSNT_00716___ 522 AAAACAGGGATTTGCAGCACCGAAGTGGTCAGTCAGCCGCGGCAGATTTC 571
|.|.||.||.||..||||.||..|.|||||.||||||.||.|..||||||
RBAM_004320__ 522 ACAGCATGGTTTCTCAGCGCCTGATTGGTCTGTCAGCAGCAGAGGATTTC 571
BSNT_00716___ 572 TGCCATTGAAGAAGAATCCCGTTATTCGGGTGCTGGAAGGAAAGCAATT- 620
||||..||||.||.|||||.||.||.||.|||||.|||||....|||||
RBAM_004320__ 572 TGCCGCTGAAAAAAAATCCGGTCATACGAGTGCTTGAAGGCGCTCAATTT 621
BSNT_00716___ 621 --TGCCTTTTTCACAGAAGAATCAAAAACGCGTTTTTATGAAGAAGCAT- 667
||| |||.|||||||||.|||||...||||||||..||||..|||
RBAM_004320__ 622 CATGC---TTTTACAGAAGAAGCAAAATTACGTTTTTACCAAGAGTCATA 668
BSNT_00716___ 668 TTCGTGTCACGCCGCAGTCCGACCGTATGGGCTACAGGCTCAAAGGAGAA 717
|.|| ||||||||.||.||||||||.|||||||||.||||.||.||.|..
RBAM_004320__ 669 TACG-GTCACGCCTCAATCCGACCGAATGGGCTACCGGCTGAAGGGCGCT 717
BSNT_00716___ 718 CCGCTCGAACTGAAGGCCCCGCTTGAGATGGTGTCGGAAGCGGTTTCATT 767
|||||.|||.||..||..|||||.||||||||.||.||.||.||..|.||
RBAM_004320__ 718 CCGCTTGAATTGCGGGAGCCGCTGGAGATGGTATCTGAGGCCGTGACGTT 767
BSNT_00716___ 768 CGGAACAGTTCAGGTGCCGCCTGACGGCAACCCGATTATCCTGCTTGCAG 817
||||||.||.|||||||||||.||||||||.||||||||.|||||.||.|
RBAM_004320__ 768 CGGAACGGTGCAGGTGCCGCCGGACGGCAATCCGATTATTCTGCTGGCTG 817
BSNT_00716___ 818 ACCGGCAGACGACTGGCGGCTATCCGAGGATCGCGCACATCATATCCGCT 867
||.|.||||||||.||.|||||||||.||||.|||||.|||||||||||.
RBAM_004320__ 818 ACAGACAGACGACGGGGGGCTATCCGCGGATGGCGCATATCATATCCGCC 867
BSNT_00716___ 868 GATCTTCCGATTGTTTCCCAAATCATGCCGGGCG-----AGCACGTTCAG 912
||||||||..|.||..||||||..||||||||.| |.|||||||.|
RBAM_004320__ 868 GATCTTCCTCTCGTCGCCCAAACGATGCCGGGGGAACATATCACGTTCCG 917
BSNT_00716___ 913 TTTGAGCCTGTGTCCCTCCAGGAGGCAGAA--GC-GCTTGCGGTAGAACG 959
|.|.||.||.||..||||.||.||| || |||| .||||...
RBAM_004320__ 918 -----GGCCGTTTCGCTGGAGGAAGCGGAACTGCTGCTT---TTAGAGAA 959
BSNT_00716___ 960 GGAACAGCATATAAAAGAACTGAAAACGAGAATGAAGATGGAATGGCTGA 1009
|||||||||..||||.||.||||||.|.||..|.||.|||||||||||||
RBAM_004320__ 960 GGAACAGCAGCTAAAGGAGCTGAAAGCAAGGCTTAAAATGGAATGGCTGA 1009
BSNT_00716___ 1010 CATAG- 1014
..| |
RBAM_004320__ 1010 TCT-GA 1014
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