Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00700 and RBAM_004250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence dna-align/BSNT_00700___mtlD.1.9828.seq
# -bsequence dna-align/RBAM_004250___mtlD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00700___mtlD-RBAM_004250___mtlD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00700___mtlD-RBAM_004250___mtlD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00700___mtlD
# 2: RBAM_004250___mtlD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1156
# Identity: 877/1156 (75.9%)
# Similarity: 877/1156 (75.9%)
# Gaps: 68/1156 ( 5.9%)
# Score: 3212.5
#
#
#=======================================
BSNT_00700___ 1 ATGATCGCCTTACATTTCGGTGCGGGAAATATCGGGAGAGGATTTATCGG 50
|||||.|||.|.||||||||.||||||||.||||||.|.||.||||||||
RBAM_004250__ 1 ATGATTGCCCTTCATTTCGGAGCGGGAAACATCGGGCGGGGCTTTATCGG 50
BSNT_00700___ 51 CGCGCTGCTTCACCACTCCGGCTATGATGTGGTGTTTGCGGATGTGAACG 100
|||.|||||.||.||.|||||||||||.||.||.||.||.||||||||.|
RBAM_004250__ 51 CGCCCTGCTCCATCATTCCGGCTATGACGTAGTTTTCGCTGATGTGAATG 100
BSNT_00700___ 101 AAACGATGGTCAGCCTCCTCAATGAAAAAAAAGAATACACAGTGGAACTG 150
||||||||||||||||.|||||||||||.||.|||||.||.|||||.||.
RBAM_004250__ 101 AAACGATGGTCAGCCTTCTCAATGAAAAGAAGGAATATACCGTGGAGCTT 150
BSNT_00700___ 151 GCGGAAGAGGGACGTTCA-TCGGAGATCATTGGCCCGGTGAGCGCTATTA 199
||.||.|..||.|| .|| .|.||.|||||.|||||.||....||.||.|
RBAM_004250__ 151 GCCGACGGCGGCCG-GCAGACCGAAATCATCGGCCCCGTTTCAGCCATCA 199
BSNT_00700___ 200 ACAGCG----GCAGTCAGACCGAGGAGCTGTACCGGCTGATGAATGAGGC 245
|||||| ||| |||.| |..||||||||.|||||||.||||||||
RBAM_004250__ 200 ACAGCGCGGTGCA---AGAAC-AAAAGCTGTACAGGCTGATCAATGAGGC 245
BSNT_00700___ 246 GGCGCTCATCACAACAGCTGTCGGCCCGAATGTGCTGAAGCTGATTGCCC 295
||||.||||.||.||.||.||.||||||||.||.||.|..||.||.||||
RBAM_004250__ 246 GGCGATCATTACGACGGCGGTGGGCCCGAACGTTCTCAGACTCATCGCCC 295
BSNT_00700___ 296 CGTCTATCGCAGAA-GGTTTAAGACGAAGAA-ATACT----GCAAACACA 339
||||.|||||.||| ||.|.||| ||.|||| .|.|| || |.
RBAM_004250__ 296 CGTCCATCGCGGAAGGGCTGAAG-CGCAGAACGTCCTCTGAGC-----CT 339
BSNT_00700___ 340 CTGAATATCATTGCCTGCGAAAATATGATTGGCGGAAGCAG-CTTCTTAA 388
||.||||||||||||||.|||||||||||.|||||.||||| .||||.||
RBAM_004250__ 340 CTCAATATCATTGCCTGTGAAAATATGATCGGCGGCAGCAGTTTTCTGAA 389
BSNT_00700___ 389 AGAAAG-AGATATACAGCCATTTAACGGAAGCAGAGC-AGAAATCCGTCA 436
| |||| || |.|.|.|.|||||.||||||||.|||| .|||.||
RBAM_004250__ 390 A-AAAGCAG-TTTTCGGACATTTGACGGAAGCGGAGCGGGAACTC----- 432
BSNT_00700___ 437 GTGAA----ACGGTAGGTTTTCCGAATTCTGCCGTTGACCGGATCGTCCC 482
||||| |||||.||.||.|||.|||||||.||.||.||||||||.||
RBAM_004250__ 433 GTGAACCGGACGGTCGGCTTCCCGGATTCTGCGGTGGATCGGATCGTGCC 482
BSNT_00700___ 483 GATTCAGCATCATGAAGACCCGCTGAAAGTATCGGTTGAACCATTTTTCG 532
|||||||||.||||||||.||||||||||||||.||.|||||.|||||.|
RBAM_004250__ 483 GATTCAGCACCATGAAGATCCGCTGAAAGTATCCGTAGAACCGTTTTTTG 532
BSNT_00700___ 533 AATGGGTCATTGA-TGAATCAGGCTTTAAAG--GGAAAACACCAG----- 574
||||||||||.|| .||| |.||||||...| || ||||
RBAM_004250__ 533 AATGGGTCATAGACAGAA-CCGGCTTTGCCGGCGG------CCAGCCGGT 575
BSNT_00700___ 575 TCATAAACGGCGCACTGTTTGTTGATGATTTAACGCCGTACATCGAACGG 624
.|.|||| |||||..|||||...||||||.|.|||||.|.||||||..|.
RBAM_004250__ 576 ACTTAAA-GGCGCGTTGTTTACGGATGATCTTACGCCTTTCATCGAGAGA 624
BSNT_00700___ 625 AAGCTGTTTACGGTCAATACCGGACACGCGGTGACAGCGTATGTCGGCTA 674
|||||||||||.|||||||||||.||.||.||.||.|||||.||||||||
RBAM_004250__ 625 AAGCTGTTTACCGTCAATACCGGTCATGCCGTTACGGCGTACGTCGGCTA 674
BSNT_00700___ 675 TCAGCGCGGACTCAAGACGGTCAAAGAAGCAATCGATCATCCGGAAATCC 724
||||||||||.|.||.||.||||||||.||.||||..|||||||||||||
RBAM_004250__ 675 TCAGCGCGGATTAAAAACCGTCAAAGAGGCCATCGGCCATCCGGAAATCC 724
BSNT_00700___ 725 GCCGTGTCGTTCATTCGGCGCTGC---TT--GAAACTGGTGACTATCTCG 769
|.||||||||..| ||.||| || |||||.||.||.||..|.|
RBAM_004250__ 725 GGCGTGTCGTGTA-----CGATGCACTTTCAGAAACGGGCGAGTACTTAG 769
BSNT_00700___ 770 TCAAATCGTATGGCTTTAAGCAAACTGAACACGAACAATATATCAAAAAA 819
|.|||.||||.||||||||||||.|.||||||||.||.||.||.||||||
RBAM_004250__ 770 TGAAAGCGTACGGCTTTAAGCAATCCGAACACGAGCAGTACATGAAAAAA 819
BSNT_00700___ 820 ATCATCGGTCGCTTTGAAAATCCTTTCATTTCGGACGATGTGACCCGCGT 869
||||||||.||||||||||||...|.|||..||||.||||||||..|.||
RBAM_004250__ 820 ATCATCGGCCGCTTTGAAAATGAATACATCACGGATGATGTGACAAGAGT 869
BSNT_00700___ 870 AGCGAGGTCACCTCTCAGAAAACTGGGAGAAAATGATAGGCTTGTAGGCC 919
.||.||.|||||.|||||||||||.||||..||||||||..|.|||||.|
RBAM_004250__ 870 CGCCAGATCACCGCTCAGAAAACTCGGAGCGAATGATAGATTAGTAGGGC 919
BSNT_00700___ 920 CGGCAAAGAAAATAAAAGAACCGAATGCACTGGCGGAAGGAATTGCCGCA 969
||||.||.|||||||||||||||||.||.|||||.|||||.||.|||||.
RBAM_004250__ 920 CGGCCAAAAAAATAAAAGAACCGAACGCGCTGGCAGAAGGCATCGCCGCC 969
BSNT_00700___ 970 GCACTGCGCTTCGA-TTTCACCGG-TGACCCTGAAGCGGTTGAACTGCAA 1017
||.||||||||.|| |.||| || |||.||.|||||||||||.||||||
RBAM_004250__ 970 GCCCTGCGCTTTGACTATCA--GGATGATCCGGAAGCGGTTGAGCTGCAA 1017
BSNT_00700___ 1018 GCGCTGATCGAAGAAAAAGGATAC-AGCGGCGTACTTCAAGAGGAGTGCG 1066
..|||.||||..|||||||| .|| |||.||||.||||||||....||||
RBAM_004250__ 1018 AAGCTTATCGCGGAAAAAGG-CACGAGCCGCGTTCTTCAAGACATTTGCG 1066
BSNT_00700___ 1067 GCATTCAGTCCCATGAACCGTTGCACGCCATCATTTTAAAGAAACTTAAT 1116
|.||||||...|||||||||.||||||.||||.|..|.||.||.||.|||
RBAM_004250__ 1067 GTATTCAGCTGCATGAACCGCTGCACGGCATCGTGCTCAAAAAGCTCAAT 1116
BSNT_00700___ 1117 CAATAA 1122
||||||
RBAM_004250__ 1117 CAATAA 1122
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