Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00695 and RBAM_004210

See Amino acid alignment / Visit BSNT_00695 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:27
# Commandline: needle
#    -asequence dna-align/BSNT_00695___ycnK.1.9828.seq
#    -bsequence dna-align/RBAM_004210___ycnK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00695___ycnK-RBAM_004210___ycnK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00695___ycnK-RBAM_004210___ycnK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00695___ycnK
# 2: RBAM_004210___ycnK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 594
# Identity:     427/594 (71.9%)
# Similarity:   427/594 (71.9%)
# Gaps:          42/594 ( 7.1%)
# Score: 1443.0
# 
#
#=======================================

BSNT_00695___      1 ATGCTTCCGATTAATAGACAGCAACACATAC-TGAAGTGGCTGAAAGAAG     49
                     .|||||||||||.|.|||||||||..|.|.| |||| |||||||||||||
RBAM_004210__      1 TTGCTTCCGATTCACAGACAGCAAACCTTGCTTGAA-TGGCTGAAAGAAG     49

BSNT_00695___     50 AAGGCTCGCTTAGAATTTCTGACATCAGCGCAAGGTTCGGCGTTTCGGAA     99
                     |.|||.||||.|.|||.||||||||.||||..||.||||||||.||.||.
RBAM_004210__     50 AGGGCGCGCTGAAAATCTCTGACATAAGCGAGAGATTCGGCGTCTCCGAG     99

BSNT_00695___    100 ATGACGGTATATAGAGATGTCAATCAGCTGGTTCAGTCAAATCAGGTCAT    149
                     |||||.||.||.|||||.|||||||||||||...|..||||.|.|.|.||
RBAM_004210__    100 ATGACCGTGTACAGAGACGTCAATCAGCTGGCGGATGCAAACCGGATTAT    149

BSNT_00695___    150 AAAAACCG-----CCGGCGGCATCACGCTCCCCGTCCGAACACCTCA-AA    193
                          |||     ||||||||||.||.|||||  |||   |.|.||| ||
RBAM_004210__    150 -----CCGGACACCCGGCGGCATTACCCTCCC--TCC---CGCTTCAGAA    189

BSNT_00695___    194 C--AG-----ATCATATGTGCAGCTATTGCTTGAAGCC-AGTCAATCAAG    235
                     |  ||     ||||   .|||.||||||||.||..||| |.||     ||
RBAM_004210__    190 CGAAGCGCCAATCA---ATGCGGCTATTGCCTGCGGCCGATTC-----AG    231

BSNT_00695___    236 C--TC--ATTCGGTTCAGCTGATTACGGTAAACCAAGACATTGAACAGCT    281
                     |  ||  ||||.||||||||.|||||.||....||||.|.||||.|||.|
RBAM_004210__    232 CATTCGTATTCTGTTCAGCTTATTACCGTTTCACAAGCCGTTGAGCAGAT    281

BSNT_00695___    282 ATGCTGCGCACATTGCGCGTTTTTGCGTTACGCGGATAAAACGGAAGAGG    331
                     .||||||...|||||||||.|||||||.||.|.||||||||.||||||.|
RBAM_004210__    282 GTGCTGCATTCATTGCGCGATTTTGCGGTATGAGGATAAAAAGGAAGAAG    331

BSNT_00695___    332 TTTCACACTTGATTTGCAGAGATTTTCTGTTACAGACAACCGTCAGTGCC    381
                     |.||.|||.|.|||||.|.|||||||||..|.|||||.||..|.|..|||
RBAM_004210__    332 TGTCCCACGTCATTTGTAAAGATTTTCTTCTCCAGACGACGCTGACGGCC    381

BSNT_00695___    382 GGTTCGGCTTATTTCGTCGTAAATGCTGA-ATTGAACCTGCACTGCTGCC    430
                     |.|||.||.||.||..|.||..||||.|| |||| ||||.||.|||||||
RBAM_004210__    382 GCTTCCGCATACTTTTTAGTCCATGCCGATATTG-ACCTTCAATGCTGCC    430

BSNT_00695___    431 AGCCGCAGGCCATTCCGTTTGCGACGCTCGATCATGCCGAACGATTTCAA    480
                     .|||.|||||.|||||.||..|.|||||.|||.|.||.|||||.||||||
RBAM_004210__    431 GGCCTCAGGCGATTCCCTTCTCAACGCTTGATTACGCAGAACGGTTTCAA    480

BSNT_00695___    481 AAAGGATTCGGCGGCGCCGTCCGCACTTTCGACCAAGCGCTGGAAGACAT    530
                     ||||||||||||||.|.|.|..||||.||.|||.|.|||..|||...|||
RBAM_004210__    481 AAAGGATTCGGCGGGGTCATTTGCACCTTTGACGAGGCGGCGGACATCAT    530

BSNT_00695___    531 GCTCA-AAGACAGAAAGAAACGCTGCACCTGCACCAAGAAATAA    573
                      ||.| |.|||||..||||..|.||||||||||.|||||.||||
RBAM_004210__    531 -CTTACACGACAGGCAGAAGGGATGCACCTGCAGCAAGACATAA    573


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