Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00693 and RBAM_004200
See
Amino acid alignment /
Visit
BSNT_00693 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:27
# Commandline: needle
# -asequence dna-align/BSNT_00693___ycnJ.1.9828.seq
# -bsequence dna-align/RBAM_004200___ycnJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00693___ycnJ-RBAM_004200___ycnJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00693___ycnJ-RBAM_004200___ycnJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00693___ycnJ
# 2: RBAM_004200___ycnJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1703
# Identity: 1178/1703 (69.2%)
# Similarity: 1178/1703 (69.2%)
# Gaps: 151/1703 ( 8.9%)
# Score: 3720.0
#
#
#=======================================
BSNT_00693___ 1 ATGAAGCGAAACAGATGGTGGATCATTCTTCTGCTTTTTCTTGTTTTCCT 50
||||..|..||||.|.|.|||.||||..||.||||.||.||||||||..|
RBAM_004200__ 1 ATGAGACAGAACAAACGCTGGCTCATCTTTTTGCTGTTCCTTGTTTTGAT 50
BSNT_00693___ 51 GCCGAAAACAAGCTTTGCTCACGCCTATAT-----TGTCAAATCTTCACC 95
.||||||||||||||.||.||||||||.|| ..|||||| ||
RBAM_004200__ 51 TCCGAAAACAAGCTTCGCCCACGCCTACATCACAAACTCAAAT-----CC 95
BSNT_00693___ 96 TGGGGAAAACAGCGAATTAAA--AAGCGCCCCTG-CGCAGGTGGAAATCG 142
.||.||.|||||||||||||| ||||||| | .||||.|.|||||.|
RBAM_004200__ 96 GGGTGAGAACAGCGAATTAAAACAAGCGCC---GAAGCAGATTGAAATTG 142
BSNT_00693___ 143 AATTTAATGAACCGGTTGAAGAAGGGTTTCATTACATTAAAGTCTTTAAT 192
|.||||||||||.|.||||||||||.||.||.|.||||||.||||.||||
RBAM_004200__ 143 AGTTTAATGAACAGATTGAAGAAGGCTTCCACTCCATTAAGGTCTATAAT 192
BSNT_00693___ 193 TCAAACGGCGACCGTGTGGATACGGACAAGAC--TGAAATCAAAAAAGAT 240
|||..||||||.||.||.||..|||.|||.|| || |.|||||||| ||
RBAM_004200__ 193 TCATCCGGCGAACGGGTCGACGCGGGCAAAACGGTG-ATTCAAAAAA-AT 240
BSNT_00693___ 241 AATCATCACATCATGACAGTGAAGC--TGAAGAAGAATCTGCCTCATGAT 288
.||...|.|||||||||.|.| || ||||.||.||||||||.||||||
RBAM_004200__ 241 GATGCCCGCATCATGACCGCG--GCATTGAAAAAAAATCTGCCGCATGAT 288
BSNT_00693___ 289 GTGTACAGAGCGGAATGGAATGCCGTATCCGCGGACGGGCATCCTGTTTC 338
.|.|||||||||||||||||.||.|||||.||.|||||.|||||.||.||
RBAM_004200__ 289 ATTTACAGAGCGGAATGGAACGCGGTATCGGCCGACGGACATCCGGTATC 338
BSNT_00693___ 339 TGGCGTCATTCCGTTTAGTATTGGGAAAGCGGATGGCGGA----TTCAGC 384
.||||||||.||.||.|||.|.||.||||| .|||||| |||||.
RBAM_004200__ 339 CGGCGTCATCCCTTTCAGTGTCGGAAAAGC---CGGCGGAGAACTTCAGG 385
BSNT_00693___ 385 AGCCAAAAAGCAGCCGACTCAGCTCTGAATCCGGGAACAGCAGCA--GAT 432
|| ||.|.|.||.|..|..|.||.||..||||.|.|.|.|| || ||.
RBAM_004200__ 386 AG-CAGACATCATCGCAAGCGGCGCTTCATCCCGAAGCGGC--CATCGAC 432
BSNT_00693___ 433 CGCGCGATTCTGTATACAGCCTTATCTCTGTTTATCGGAACGGTTTTCTT 482
||||..|||.||||.||.||..|.||.|||||||||||.||||.|||.||
RBAM_004200__ 433 CGCGGTATTTTGTACACCGCTCTCTCCCTGTTTATCGGCACGGCTTTTTT 482
BSNT_00693___ 483 CCATCTTTTCTGGTATAAAGGGAAATCAGAACAG-TTCGTCAAACGGACG 531
||||||.||.|||||.| |||||.|.|| || |||.|||||.| |.
RBAM_004200__ 483 CCATCTGTTTTGGTACA----GAAATAATAA-AGATTCATCAAAAG--CA 525
BSNT_00693___ 532 AGACGTATCCTG---ACCGGCTC--GATCGCAGCATT----------GGG 566
|.|||.| ||| |.|.|||| |||..| || |||
RBAM_004200__ 526 AAACGAA--CTGTAAAGCTGCTCGTGATTTC----TTTATGTGTAACGGG 569
BSNT_00693___ 567 GCTGGCGCT--TTTGCTTCAGCTTCCGATTCAGACAAAAGCGAACGCAGG 614
|||.||||| |.||| |||||.|||||.|||||.||||..|||||.||
RBAM_004200__ 570 GCTCGCGCTTATCTGC--CAGCTCCCGATCCAGACGAAAGAAAACGCGGG 617
BSNT_00693___ 615 CGACGGCTGGGGCAGCGCATTCCAGCCGGGCTACATCAGAGAAACACTGT 664
||.||..|||.||..|||.||||||||||.|||..|.|.||||||.|| |
RBAM_004200__ 618 CGGCGCTTGGAGCGCCGCGTTCCAGCCGGACTATGTAAAAGAAACGCT-T 666
BSNT_00693___ 665 TTG-AGACAGCAGGCGGCTCCATTTGGATCATACAGGCC-GCTCTGTTCG 712
.|| |.||.||||||||.|.|.|.|||||.||.|||.|| ||| |.||..
RBAM_004200__ 667 CTGAAAACGGCAGGCGGGTACGTCTGGATGATCCAGACCAGCT-TATTTA 715
BSNT_00693___ 713 TGCTCCTCGCACTGTCTGTCAT--TCCTGCGAT--ACGGAAAAACCGCTT 758
|.||.|||||.||||| ||| |||.||..| |.|.|.||| ||.|
RBAM_004200__ 716 TCCTGCTCGCCCTGTC---CATGATCCCGCTGTTGAAGAAGAAA--GCAT 760
BSNT_00693___ 759 TTC-ATCCTTTGGCTATTGGATAGCGCCGCTCATTTTCTTTTTCGGTCTC 807
|.| .||.||||..||.||||..||||||||..|.|||||.|||| ||.
RBAM_004200__ 761 TCCGGTCATTTGCGTACTGGACGGCGCCGCTGTTGTTCTTCTTCG--CTT 808
BSNT_00693___ 808 CTGCTT---GCCAAGGCGTTTACCGGGCATGCCGCTGTCGTTGAAGAAAA 854
| |||| ||.||.||.||..||||||||||.||.|||.||||.|||||
RBAM_004200__ 809 C-GCTTTTGGCAAAAGCATTCGCCGGGCATGCGGCGGTCATTGACGAAAA 857
BSNT_00693___ 855 AACGGTCGGCATTTTGATGGATTTCCTTCATTTAACTTCCGCTTCCATCT 904
|.||||||||||...||||||.||.||.||||||.|..||||.||..|.|
RBAM_004200__ 858 AGCGGTCGGCATCGCGATGGACTTTCTCCATTTATCGGCCGCGTCTGTAT 907
BSNT_00693___ 905 GGGTTGGCGGAATAGCGGCACTCGTTTTGCTGCTCTCAAAAGAATGGAGG 954
||.|.|||||.||.||.||.||.||..||||.||.|||..|||.|||||.
RBAM_004200__ 908 GGATGGGCGGTATCGCCGCGCTTGTGCTGCTTCTTTCATCAGAGTGGAGA 957
BSNT_00693___ 955 CAGCCTGACAAAACGCTCGCGTGGGAGACGGTCAGACGGTTCTCCCCATG 1004
.|..|.||.|||||..||||.|||||.||||||||||||||.||.||.||
RBAM_004200__ 958 AAAACCGATAAAACCATCGCTTGGGAAACGGTCAGACGGTTTTCTCCTTG 1007
BSNT_00693___ 1005 GGCGCTCACTGCAGTCGGCGTCATTTTGTTTTCAGGCTTGCTCAATGGAT 1054
||||.||.|..|.|||||.||..|.||.||||||||..||||.||.||||
RBAM_004200__ 1008 GGCGTTCGCCTCTGTCGGTGTGCTGTTATTTTCAGGTGTGCTGAACGGAT 1057
BSNT_00693___ 1055 TTTTCATCATTCGTTCAATGGATTCACTGTTCCATACAGCGTATGGCCAA 1104
|||||||.||.||..|..|.||||||||.||.||.||.||.||.|| .||
RBAM_004200__ 1058 TTTTCATTATCCGCACGTTTGATTCACTCTTTCACACCGCTTACGG-TAA 1106
BSNT_00693___ 1105 ---GCTCTTTTAGTGAAAAGCGGGCTGTTTGTTTTCATGCTGGTCTTAGG 1151
||||.||| ||||||.|||.||||||||..|||||||.||..|.||
RBAM_004200__ 1107 GACGCTCCTTT--TGAAAATCGGACTGTTTGTCATCATGCTTGTGCTCGG 1154
BSNT_00693___ 1152 CGCGATTCATTTTCTGCTTACCAGAA----AGCAGCGCCGCACAGGA--A 1195
|||..||||..|...|.|.|| ||| ||||| ..|.|||| |
RBAM_004200__ 1155 CGCCGTTCACGTATGGATAAC--GAAGTTCAGCAG----AAAAAGGAGCA 1198
BSNT_00693___ 1196 TCAGCCGAACGTTGAAAGCGGAGTGGGCAATCGGCATCGCTGTATTGATC 1245
|||||..||||.|.||.||.||.||||||.|.||||||||.||.||..|.
RBAM_004200__ 1199 TCAGCGCAACGATAAAGGCCGAATGGGCACTAGGCATCGCGGTGTTATTT 1248
BSNT_00693___ 1246 ACAGCGGCCGTGTTTACAAGCCTGCCAAGCCCGCCTGAGCCAGCGCCGGA 1295
|||.|.|||||.||.|||||||||||.||||||||...|||.|||||...
RBAM_004200__ 1249 ACAACCGCCGTCTTCACAAGCCTGCCCAGCCCGCCGCCGCCTGCGCCATT 1298
BSNT_00693___ 1296 ACCGTTCTACCAAAC----CA-AAGCGATTGAGAACGGACAAAGCGTTTC 1340
.||.|| .||| || ||.||||.|..|||||..|||.|.|.||
RBAM_004200__ 1299 GCCTTT-----TAACGGCTCAGAAACGATCGGAAACGGGGAAACCCTGTC 1343
BSNT_00693___ 1341 TCT--CAGCATCAGCCCAAACCAGCCCGGAAAAAATGTTTTTGAGCTGCG 1388
|| || |||.|..||.||||||||.||.|||||||..|||.|..|...
RBAM_004200__ 1344 -CTTGCA-CATTACGCCGAACCAGCCGGGTAAAAATGAATTTCAAGTCAT 1391
BSNT_00693___ 1389 TGTCACCGACCATAACGG-AGATCCCGTGAAAAACATCCAGCAAATCACG 1437
|||||||||.||.||||| ||.| ..||.|||.||||.||||||.|.|||
RBAM_004200__ 1392 TGTCACCGATCACAACGGCAGCT-TGGTAAAAGACATTCAGCAATTTACG 1440
BSNT_00693___ 1438 TTAACCGTTTATAAAACAGGTCTGTCAGGCAGCGAAAACA-----AAAGC 1482
.|.||.|||||..|.|| ||.|| ||| ||.|| ||||| |||||
RBAM_004200__ 1441 GTCACTGTTTACCAGAC-GGGCT-TCA-GCGGC--AAACAGCATGAAAGC 1485
BSNT_00693___ 1483 ACCTTTACATTAAAAGAAAAAACAA---AAGGCGTCTTCCAGGATCAA-- 1527
|||||| .|||..||| ||.||.| |||||...|| |.||
RBAM_004200__ 1486 ACCTTT-GATTTGAAG--AAGACGAAGGAAGGCACATT------TGAAGC 1526
BSNT_00693___ 1528 ----AACCTGTCGATTAATGAAAAAGGAAACTGGAAGATCAAAGTCCACG 1573
||||||||.||.|..|||||.|||||||||||||||||||||||||
RBAM_004200__ 1527 CGCCAACCTGTCCATCACCGAAAAGGGAAACTGGAAGATCAAAGTCCACG 1576
BSNT_00693___ 1574 GCCTGACCGGCGACTTTAACGAAATCAATATCATGTTTACAAAGACCAAT 1623
|.|||||...|||.|||||.||||||||....||.||..|||.|||.||.
RBAM_004200__ 1577 GGCTGACAAACGATTTTAATGAAATCAACCAAATATTCTCAACGACAAAC 1626
BSNT_00693___ 1624 TAA 1626
|||
RBAM_004200__ 1627 TAA 1629
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.