Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00680 and RBAM_004100
See
Amino acid alignment /
Visit
BSNT_00680 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:26
# Commandline: needle
# -asequence dna-align/BSNT_00680___ycnC.1.9828.seq
# -bsequence dna-align/RBAM_004100___ycnC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00680___ycnC-RBAM_004100___ycnC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00680___ycnC-RBAM_004100___ycnC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00680___ycnC
# 2: RBAM_004100___ycnC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 930
# Identity: 630/930 (67.7%)
# Similarity: 630/930 (67.7%)
# Gaps: 105/930 (11.3%)
# Score: 1957.0
#
#
#=======================================
BSNT_00680___ 1 ATGCTTGATAAAAAAACAGATATCTTGTTAGCCGCGCGAAAGCTTTTTTC 50
|||..||||||.|||||.|||||..||.|.||.||..|.|||||||||||
RBAM_004100__ 1 ATGAATGATAAGAAAACGGATATTCTGCTGGCGGCAAGGAAGCTTTTTTC 50
BSNT_00680___ 51 --GGAAAAGGATTTTACGTCGGTTTCCATGCAGGCGATCGCAGAAGAATG 98
||||||| .|||.||||||||||.|||||||||||||||||.||.||
RBAM_004100__ 51 CGGGAAAAG--CTTTTCGTCGGTTTCGATGCAGGCGATCGCAGAGGAGTG 98
BSNT_00680___ 99 TAAGATGTCAAAAGCTTCGATATATAAGCTGTTTCAATCTAAAGAAGATC 148
.||..|.||.|||||.||..||||||||||||||.||||.||.|||||.|
RBAM_004100__ 99 CAAAGTCTCCAAAGCGTCTTTATATAAGCTGTTTGAATCAAAGGAAGACC 148
BSNT_00680___ 149 TGCTTTTGGAGCTGCT-GTCATTTAACCAGAAGCAAATGGTGGCCGCGGC 197
||||.||||||||||| |.| |||||||||||.||.|||||.|||||.||
RBAM_004100__ 149 TGCTGTTGGAGCTGCTCGAC-TTTAACCAGAAACAGATGGTAGCCGCCGC 197
BSNT_00680___ 198 CTCAAGACTTCAGGAAAATAC-CGCACTTACACCGGAGGAGC-GTTTGAC 245
.|||..|.|..|.|||.|.|| .|| ||..|.||.|||||.| ||||
RBAM_004100__ 198 TTCATTATTGAATGAAGAAACAAGC-CTCTCCCCTGAGGAACGGTTT--- 243
BSNT_00680___ 246 GCAAAAGGTCAAAATG------GAACTGGAGGGCTTCAGGCGGAATCAGC 289
||.||| |||.|| ||.||.||.|||||||||||.|||||||
RBAM_004100__ 244 GCCAAA----AAACTGATGGCTGAGCTTGAAGGCTTCAGGCGCAATCAGC 289
BSNT_00680___ 290 AGTTTTTCAATATGCTGACCTACGGAAACCCCAAGCTGC--ATAATGACC 337
|||||||.||||||||||..|||||||.|||| .||.| .||||||.|
RBAM_004100__ 290 AGTTTTTTAATATGCTGATGTACGGAAGCCCC--TCTTCCATTAATGAGC 337
BSNT_00680___ 338 GGGTCAAACAGCATATCCATCAGA-CCAGATCGACGATTATCTGCTGGCA 386
||||.||||.||||||||| |||| ||.|.||.||..|||||||||||||
RBAM_004100__ 338 GGGTAAAACGGCATATCCA-CAGAGCCCGCTCCACCTTTATCTGCTGGCA 386
BSNT_00680___ 387 CCGCGATTCGCTGATCCAGGCGTATGGAGAAACCATTCTCCCGTTTGTGT 436
.||||||||.|||||.|||.||||.||.|||..||||.|.||.|.|||.|
RBAM_004100__ 387 TCGCGATTCACTGATTCAGACGTACGGCGAAGACATTATTCCTTATGTAT 436
BSNT_00680___ 437 GGGATTTGGTTATCATTCTTCACGG---CATGATGCGTGAGTTTTTAAT- 482
||||..||||.|||.|.||.||.|| |.||| ||| |||
RBAM_004100__ 437 GGGAGCTGGTGATCGTCCTGCAGGGGCTCCTGA-----GAG-----AATG 476
BSNT_00680___ 483 ------GCTGATCAAAATCGAGGAAAAACCGCTTGAGCTTGACCCGATCG 526
||||||.||..|.||..||.|||||||.|..||.||.|||.||.
RBAM_004100__ 477 CATCACGCTGATTAAGCTGGAAAAAGAACCGCTCGCCCTGGAGCCGCTCA 526
BSNT_00680___ 527 CAGAGTTTATCATCAGCACCCTCAATCAGATTATCAAAAACAGG------ 570
|.||||||||||||.||...|||||||..||..||.||||||||
RBAM_004100__ 527 CGGAGTTTATCATCCGCCATCTCAATCTCATCGTCGAAAACAGGACAACC 576
BSNT_00680___ 571 GAAACCCGCCAGTCTCTTCTTCCGCC-----CGAAGCCATCGAGCTTTAT 615
|||||| .||.| ||| .||.| ||.||.||||||
RBAM_004100__ 577 GAAACC--GCATT----------GCCTCAGGAGATG--ATTGACCTTTAT 612
BSNT_00680___ 616 ATTCATTCAGCATCCTCCTACAAGCCAAAGGATAAATCAGTCCTATTATC 665
||....||.||.|||||.|...||||.||.||.|||...||..|..|..|
RBAM_004100__ 613 ATCGCCTCCGCTTCCTCATTTGAGCCGAAAGACAAAAACGTATTGCTGGC 662
BSNT_00680___ 666 GGAAAGCCTGAAGGAATTACATAAAGGCATCTCTTCCCTGTCCGCCGCGG 715
.|||||||||||||||.|..|..|||...||||..|||| |||| |.||
RBAM_004100__ 663 TGAAAGCCTGAAGGAACTGAAAGAAGCGGTCTCAGCCCT-TCCG--GAGG 709
BSNT_00680___ 716 ---ACTATGACGTAGATGAACTGACATCCGCAGCCGCCATGCTGGAGGAA 762
|.|||||||..|..|.|||..|.|||||.||.||.|||||||||.||
RBAM_004100__ 710 AAAAATATGACGCCGCAGGACTCGCTTCCGCGGCGGCTATGCTGGAGAAA 759
BSNT_00680___ 763 GAAGCGAAGAAG--GAAGAACCCCGCGCTTTT-TTACTCAAATCACTGAT 809
|||.| ||.|| .||.|.||.||.|.|||| ||| |.|||.|.||.||
RBAM_004100__ 760 GAATC--AGCAGACAAACAGCCGCGGGATTTTCTTA-TAAAAGCGCTCAT 806
BSNT_00680___ 810 TGGCTATCTGGAACA-----AACCAGTGTTTTAACA-CAGCCCGTTTCCA 853
.||.|||.||||.|| .|||..|| || ||| |||.||.||
RBAM_004100__ 807 CGGTTATTTGGAGCAGGCCGGACCGCTG------CACCAG-CCGCTTGCA 849
BSNT_00680___ 854 --TGTTAAAAACACTGTT--AATTACTTAG 879
.||| ||||||.||.| ||.|| |.|
RBAM_004100__ 850 GCCGTT-AAAACATTGCTCAAACTA-TAA- 876
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.