Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00665 and RBAM_003980
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:25
# Commandline: needle
# -asequence dna-align/BSNT_00665___yclI.1.9828.seq
# -bsequence dna-align/RBAM_003980___yclI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00665___yclI-RBAM_003980___yclI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00665___yclI-RBAM_003980___yclI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00665___yclI
# 2: RBAM_003980___yclI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1513
# Identity: 1072/1513 (70.9%)
# Similarity: 1072/1513 (70.9%)
# Gaps: 128/1513 ( 8.5%)
# Score: 3683.0
#
#
#=======================================
BSNT_00665___ 1 ATGAACTTTATCAAACGGGCCTTTTGGAATATGAAGGCTAAAAAGGGAAA 50
|||||||||||.|||.|.||||||||||..||||||||.|||||||||||
RBAM_003980__ 1 ATGAACTTTATAAAAAGAGCCTTTTGGAGCATGAAGGCAAAAAAGGGAAA 50
BSNT_00665___ 51 AACGTTATTGCAATTATTTGTGTTTACAGTCATATGTGTCTTTGTTCTAT 100
|||.||.|||||..|..||||||||.||||.||.||..|.|||||.||.|
RBAM_003980__ 51 AACATTTTTGCAGCTGGTTGTGTTTTCAGTGATTTGCATTTTTGTCCTGT 100
BSNT_00665___ 101 CAGGCCTCACCATCCAGTCGGCAGCACAAAAGTCAAGCGAACTGGCCAGA 150
|.||.||.||.||||||||.||||||.|.||.||||||||||||||.||.
RBAM_003980__ 101 CCGGTCTTACGATCCAGTCAGCAGCAAAGAAATCAAGCGAACTGGCAAGG 150
BSNT_00665___ 151 CAGGAACTCGGCGGAAGCGTGACACTTCAGGTTGACCGCCAAAAGCAAAT 200
|||.|.||||||||.|||||.|||||.||||.||||||||||||||||||
RBAM_003980__ 151 CAGCAGCTCGGCGGGAGCGTCACACTCCAGGCTGACCGCCAAAAGCAAAT 200
BSNT_00665___ 201 GGAAAAACAGCAGGACAG-CGGTGAAAA----ACGCAGCTTCAAATCAAC 245
||...|.||||| .|.|| ||||||||| ||| ||..|||||||
RBAM_003980__ 201 GGCGCAGCAGCA-AAAAGACGGTGAAAAGAGGACG----TTTGAATCAAC 245
BSNT_00665___ 246 ACCGATCAAAGTGTCTGATGCGAATAAGCTTGCAGCGCTTGAC--CATGT 293
.|||||....||.||.|||||.||.||||||.|| .|||.|| |||||
RBAM_003980__ 246 GCCGATTTCCGTCTCAGATGCCAAGAAGCTTACA--TCTTTACAGCATGT 293
BSNT_00665___ 294 GAAGAGCTACAATTACACCACATCAGCTTCAGCCAACGCGGGAAACTTTG 343
.||.|..|||||.|.|..|||..||||.|||||.||.||.|.||.|||||
RBAM_003980__ 294 TAAAAATTACAACTTCCTCACGACAGCGTCAGCAAATGCAGAAAGCTTTG 343
BSNT_00665___ 344 ATGCGATTGAAAGCTCTAGTTCAAGTGATTCCAGCTCC---AGCAGTTCA 390
|||||||..||||| |||.|.||.| ||| || |.||||||.
RBAM_003980__ 344 ATGCGATAAAAAGC------TCAGGCGAAT-CAG--CCGATAACAGTTCC 384
BSNT_00665___ 391 AGCTCAAACGCTAAAAACAGC------CAAGGCGGCGGACAAGGCGGACC 434
.|| .||.|| |||||||||||| .|||.
RBAM_003980__ 385 GGC------------GACGGCCGTTTTCAAGGCGGCGGA------AGACA 416
BSNT_00665___ 435 GCAAATGGTTCAAGCCGATCTTTCGATTGAAGGTGTCATCAGCACAGCGT 484
|..||| ||| |||.|||.|||||||.|||||.||..||...||.||.|
RBAM_003980__ 417 GATAAT--TTC-AGCGGATATTTCGATCGAAGGCGTGCTCTCTACGGCAT 463
BSNT_00665___ 485 TAGTCGATGATTTCTCTGACGGAGA-TTCAAAAATCACAGACGGACGCGC 533
|..|.|||||||||.|.|.||| || .|||||||||||.|||||||||||
RBAM_003980__ 464 TGCTTGATGATTTCACAGGCGG-GAGCTCAAAAATCACTGACGGACGCGC 512
BSNT_00665___ 534 GATTACAAAATCAGATGTCGG-CAAAAAAGTAACAGTGATCAACGAAACT 582
.||.|||||..|||||| ||| |..||||||..|.|||||.||.|||||.
RBAM_003980__ 513 CATCACAAAGACAGATG-CGGACGCAAAAGTCGCCGTGATTAATGAAACG 561
BSNT_00665___ 583 TTAGCGGAAGAAAATGATTTGAGCGTTGGCGATTCGATCACAATTGAATC 632
.|.||.||..||||..|..|||..||.||||..||.||.||..|| ||
RBAM_003980__ 562 CTGGCAGATCAAAACAAGCTGAAGGTCGGCGGCTCCATTACCGTT---TC 608
BSNT_00665___ 633 AGCAACAGATGAAGAT------ACGACGGTAAAGCTGAAGATCGTCGGTA 676
..||||||..||.||| |..||| |||||.||.||.||.||.|
RBAM_003980__ 609 CTCAACAGCGGATGATTCTGTGAAAACG---AAGCTTAAAATTGTGGGAA 655
BSNT_00665___ 677 TTTATAAAACAACATCTTCAGGCGATGACCAAGCCCAAAATTTCTCTTTC 726
|.||||||||||||||.|||||.||.||.||.||.||..||||.||.|||
RBAM_003980__ 656 TCTATAAAACAACATCCTCAGGAGACGATCAGGCACAGCATTTTTCATTC 705
BSNT_00665___ 727 TTAAACCCTTATAACAAGCTTTATACGCCTTACACAGCAACAGCGGCGCT 776
|||||.|||.|.||.||..|.||||||||||||||.||..|.||||||.|
RBAM_003980__ 706 TTAAATCCTGACAATAAAATCTATACGCCTTACACCGCCGCGGCGGCGTT 755
BSNT_00665___ 777 GAAAGGCGAC-GACTATAAAAATACGATTGACTCAGCTGTTTACTATATG 825
.||||| |.| ||.||.|||||.|..||...||||||.|||||.||||||
RBAM_003980__ 756 AAAAGG-GTCTGATTACAAAAACAAAATCAGCTCAGCCGTTTATTATATG 804
BSNT_00665___ 826 GACGACGCGAAAAATATGGATGCTTTCGTAAAAGCAGCGAAGAAAACATC 875
||.||.||.|||.||||.||..|.|||||....||.|||||.||||||||
RBAM_003980__ 805 GATGATGCCAAATATATTGACTCATTCGTTGCGGCTGCGAAAAAAACATC 854
BSNT_00665___ 876 AATAGACTTCGATA----CGTACACACTGAATACAAACGATCAGCTTTAC 921
.||||| .|||| | ||..|..|||..|||||.||||||.|.||.
RBAM_003980__ 855 TATAGA---TGATAAAATC-TATGCGATGACGACAAATGATCAGGTGTAT 900
BSNT_00665___ 922 CAGCAAATGGTCGGACCGATTGAAAATGTGGCTTCTTTCTCTAAAAACGT 971
||||||||||||||.||||||||||||||.||.||.||.|||||||||||
RBAM_003980__ 901 CAGCAAATGGTCGGCCCGATTGAAAATGTCGCGTCATTTTCTAAAAACGT 950
BSNT_00665___ 972 GGTGTATCTTGTATCAGTGGCAGGCGCCGTCATTCTTGGCCTGATTGTCA 1021
.||||||||||||||..|.||.|||||.||||||||.||..||||.||.|
RBAM_003980__ 951 AGTGTATCTTGTATCCATCGCGGGCGCGGTCATTCTCGGGTTGATCGTGA 1000
BSNT_00665___ 1022 TGATGTCAATCAGGGAGCGCAAATACGAAATGGGCGTGTTAATGGCCATC 1071
|||||||.||||||||.|||||.||.||||||||.||.||.|||||.|||
RBAM_003980__ 1001 TGATGTCGATCAGGGAACGCAAGTATGAAATGGGTGTCTTGATGGCGATC 1050
BSNT_00665___ 1072 GGTGAAAAACGATGGAAATTGATTGGACAGTTCTTGACTGAGATTCTGAT 1121
||.|||||.||.|||||..|.||.|||||.|||||.||.||.||||||.|
RBAM_003980__ 1051 GGCGAAAAGCGCTGGAAGCTCATCGGACAATTCTTAACGGAAATTCTGGT 1100
BSNT_00665___ 1122 TGTGGCCGTTATCGCTATCGGCCTTGCATCTGTGACGGGAAATCTCGTCG 1171
|||.||||||||.||.|||||..|.|||||.||.|||||.|..||.||.|
RBAM_003980__ 1101 TGTCGCCGTTATTGCCATCGGGATCGCATCCGTCACGGGCAGCCTTGTGG 1150
BSNT_00665___ 1172 CAAATCAGCTTGGAAATCAGCTTTTATCCCAGCAAATCAGTTCATCAACC 1221
|.||||||||.||||||||||||.|.||||||||..||||.|||.|....
RBAM_003980__ 1151 CGAATCAGCTCGGAAATCAGCTTCTTTCCCAGCAGGTCAGCTCAGCCGAT 1200
BSNT_00665___ 1222 GATTCAAC----GCAAACCGCAAGC------------GGACAAATGCCCG 1255
||||| || ||||| ||||| |||.|||||||
RBAM_003980__ 1201 GATTC-ACAGCAGCAAA---CAAGCGGCTGGGGCGGAGGAGAAATGCC-- 1244
BSNT_00665___ 1256 GCGGCGGTGGCGGCATGGGCGGCAAAATGTTCGGCCA-CAGTTCATCAAA 1304
|||| ||.|||||| ||||||||.|| || ||||||...
RBAM_003980__ 1245 GCGG-GGAGGCGGC------------ATGTTCGGTCAGCA-TTCATCCGG 1280
BSNT_00665___ 1305 CGTGGACGTTATCGATTCACTG------AACGTCGCGGTTTCTATGAACG 1348
||.|||..|.|||..|.||.|| |||||| ||..||||.|
RBAM_003980__ 1281 CGCGGATATCATCAGTACAATGCAGGTAAACGTC------TCGCTGAATG 1324
BSNT_00665___ 1349 ACATGCTTATTCTGGGCGGGATCGGCATCCTAATCGCAATCATTGCAACA 1398
||.|.||.|||||.|||||.||||||.||..|||.||..||||.||.|||
RBAM_003980__ 1325 ACCTTCTGATTCTTGGCGGCATCGGCGTCGCAATTGCCGTCATCGCCACA 1374
BSNT_00665___ 1399 TTGCTGCCGTCAATTTCAGTACTGCGGCTTCATCCGAAAACGATATTGAC 1448
||.||||||||..|.|||||..||||||||||.||.||||||||..||.|
RBAM_003980__ 1375 TTACTGCCGTCTGTATCAGTCATGCGGCTTCACCCTAAAACGATCCTGGC 1424
BSNT_00665___ 1449 AAAACAGGAATAG 1461
.||.||||||||.
RBAM_003980__ 1425 CAAGCAGGAATAA 1437
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.