Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06057 and RBAM_003950
See
Amino acid alignment /
Visit
BSNT_06057 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:32
# Commandline: needle
# -asequence dna-align/BSNT_06057___yxeP.1.9828.seq
# -bsequence dna-align/RBAM_003950___yxeP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06057___yxeP-RBAM_003950___yxeP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06057___yxeP-RBAM_003950___yxeP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06057___yxeP
# 2: RBAM_003950___yxeP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1190
# Identity: 853/1190 (71.7%)
# Similarity: 853/1190 (71.7%)
# Gaps: 85/1190 ( 7.1%)
# Score: 2996.0
#
#
#=======================================
BSNT_06057___ 1 ATGGCCGACAAAGCGT----TTCAT-----ACCCGTTTAATCAATATGCG 41
|||||..|..||.||| .|||| |..||||||||||||||.||
RBAM_003950__ 1 ATGGCAAATGAAACGTATGAATCATTAAACAAACGTTTAATCAATATCCG 50
BSNT_06057___ 42 GCGTGATCTTCATGAACATCCTGAGCTGTCATTTCAAGAGATT--GAAAC 89
.||.||.|||||||||||.|||||||||||| ..|.|| ||.| |||||
RBAM_003950__ 51 CCGCGACCTTCATGAACACCCTGAGCTGTCA-GGCGAG-GAATACGAAAC 98
BSNT_06057___ 90 GACGAAAAAAATCCGCCGCTGGCTTGAGGAGGAGCAAATCGAAATACTTG 139
||||||.|||||||||||||||||.|||||.||...||||....|.||||
RBAM_003950__ 99 GACGAATAAAATCCGCCGCTGGCTGGAGGAAGAAGGAATCACGGTTCTTG 148
BSNT_06057___ 140 ATGTTCCTCAATTGGAGACTGGCGTGATTGCAGAAATCAAAGGACGGGAA 189
||.|.||..||.|..|.||.||.|||||.||.|||||||||||| |..||
RBAM_003950__ 149 ATATGCCGAAACTTCAAACCGGAGTGATCGCTGAAATCAAAGGA-GACAA 197
BSNT_06057___ 190 GA-CGGCCCCGTGATAGCAATACGAGCGGATATTGACGCGCTCCCGATCC 238
.| |||||||||.||.||..|..|||||||.||.|||||.||.||||||.
RBAM_003950__ 198 AAGCGGCCCCGTCATCGCCGTCAGAGCGGACATCGACGCACTGCCGATCG 247
BSNT_06057___ 239 AAGAACAGACGAATCTTCCATTTGCATCTAAGGTTGATGGC---ACA--- 282
||||..|.||.||.|||||.|||||.|| || |||
RBAM_003950__ 248 AAGAGAATACAAACCTTCCGTTTGCTTC-----------GCGAAACAGCG 286
BSNT_06057___ 283 -----ATGCATGCGTGCGGACACGATTTTCATACTGCTTCTATTATTGGC 327
|||||.||.|||||.||.|||||.|||||.||.|||||..|.|||
RBAM_003950__ 287 GCGTGATGCACGCCTGCGGCCATGATTTCCATACGGCATCTATCCTCGGC 336
BSNT_06057___ 328 ACAGCGATTTTGCTGAATCAAAGAAGGGCCGAGCTGAAAGGTACAGTCCG 377
||.||..||||..|.|||.|.||||.|...|||||||||||.||.||.||
RBAM_003950__ 337 ACGGCTTTTTTATTAAATGAGAGAAAGCATGAGCTGAAAGGAACGGTGCG 386
BSNT_06057___ 378 CTTTATTTTTCAGCCAGCCGAAGAAATTGCCGCAGGAGCAAGAAAGGTCA 427
.||||||||||||||.||.||||||||.|||||.|||||||||.||||||
RBAM_003950__ 387 GTTTATTTTTCAGCCCGCGGAAGAAATCGCCGCCGGAGCAAGACAGGTCA 436
BSNT_06057___ 428 TAGAAGCTGGCGTACTTGATGGCGTTTCCGCGATTTTCGGCATGCACAAT 477
|.|||||.||||..|||||.||.||.||.|||||.|||||||||||.||.
RBAM_003950__ 437 TTGAAGCCGGCGCGCTTGACGGTGTATCGGCGATATTCGGCATGCATAAC 486
BSNT_06057___ 478 AAGCCGGATCTGCCTGTCGGAACCATTGGTGTAAAGGAAGGTCCGCTTAT 527
||.||.||.||.||.|||||.||..|.|||.|.||.|||||.|||||.||
RBAM_003950__ 487 AAACCTGACCTCCCCGTCGGCACGGTCGGTCTGAAAGAAGGCCCGCTGAT 536
BSNT_06057___ 528 GGCAAGTGTTGACCGGTTTGAGATCGTCATCAAAGGGAAAGGCGGACACG 577
|||.|||||.|||||.|||||.|||....|.|||||.||||||||.||||
RBAM_003950__ 537 GGCGAGTGTCGACCGCTTTGAAATCACTGTTAAAGGAAAAGGCGGCCACG 586
BSNT_06057___ 578 CCGGCATCCCGAATAACAGTATTGATCCAATCGCTGCAGCCGGACAAATC 627
||||.|||||..|||||||.||||||||.||....||.||.|||||.||.
RBAM_003950__ 587 CCGGAATCCCTGATAACAGCATTGATCCGATTCAGGCGGCAGGACAGATT 636
BSNT_06057___ 628 ATCAGCGGGCTGCAATCTGTGGTCAGCCGCAATATCAGCTCACTGCAAAA 677
|||.||||.||||||||.||.||||||.|.|||||||||||.||.||.||
RBAM_003950__ 637 ATCGGCGGCCTGCAATCAGTTGTCAGCAGAAATATCAGCTCGCTTCACAA 686
BSNT_06057___ 678 CGCAGTCGTCAGTATCACAAGAGTAC-AGGCGGGCACCTCGTGGAACGTA 726
.||.||||||||.|||||||||||.| |||| ||||.|||.|||||.||.
RBAM_003950__ 687 TGCCGTCGTCAGCATCACAAGAGTTCAAGGC-GGCAGCTCTTGGAATGTC 735
BSNT_06057___ 727 ATTCCAGACCAAGCTGAAATGGAGGGGACGGTTCGAACCTTTCAAAAAGA 776
||.||.|||||.|.|||||||||.||.||.||.||.||.|||||||||||
RBAM_003950__ 736 ATCCCGGACCATGTTGAAATGGAAGGCACCGTCCGGACGTTTCAAAAAGA 785
BSNT_06057___ 777 AGCGAGGCAGGCTGTTCCCGAGCATATGAGACGAGTGGCTGAAGGAATTG 826
||||.|..|.||||||||..|.|||||||..||.||.||.||||||||.|
RBAM_003950__ 786 AGCGCGTGACGCTGTTCCGAAACATATGAAGCGGGTTGCCGAAGGAATCG 835
BSNT_06057___ 827 CAGCGGGCTATGGGGCACAAGCAGAATTCAAGTGGTTTCCTTATTTGCCT 876
||||.||.|..||||||.|.||.||.|||...||||.|||||| |||
RBAM_003950__ 836 CAGCCGGATTCGGGGCAGAGGCTGATTTCCGCTGGTATCCTTA----CCT 881
BSNT_06057___ 877 TCCGTTCA-----GAATGACGGCACATTTTTGAATGCGGCATCCGAAGCT 921
|||| ||| |||.||| ||.|.||| |||.| |.||.
RBAM_003950__ 882 TCCG-TCAGTGATGAACGAC-GCCCGTTT----------CATAC-AGGCG 918
BSNT_06057___ 922 GCGG----CACGGCT---------TGGCTATCAAACCGTTCACGCTGAGC 958
|||| .|||||| .|||| |||.|||||||..||.||.|
RBAM_003950__ 919 GCGGAACAAACGGCTGAAAGCCTCGGGCT-TCAGACCGTTCGGGCAGAAC 967
BSNT_06057___ 959 AGTCTCCGGGCGGAGAAGACTTCGCTCTGTATCAAGAGAAGATTCCGGGA 1008
||||.||.|||||.||||||||.||..|.||||||||.||.||.||.||.
RBAM_003950__ 968 AGTCGCCCGGCGGGGAAGACTTTGCATTATATCAAGAAAAAATCCCCGGC 1017
BSNT_06057___ 1009 TTTTTTGTCTGGATGGGAACGAACGGGACGGAGGAGTGGCATCATCCGGC 1058
||.||.||||||||||||||.|||||.||.||.||.|||||.|||||.||
RBAM_003950__ 1018 TTCTTCGTCTGGATGGGAACAAACGGAACAGAAGAATGGCACCATCCCGC 1067
BSNT_06057___ 1059 CTTTACACTGGATGAAGATGCCCTTACGGTTGCCTCTCAATACTTTGCGG 1108
|||.|||||.||.|||.|.||.||..|||..||..||.|.|..||.||..
RBAM_003950__ 1068 CTTCACACTCGACGAAAAAGCGCTCCCGGCAGCGGCTGAGTTTTTCGCCC 1117
BSNT_06057___ 1109 AGCTGGCGGTTATTGTATTGGAGACCATCA-----AATGA 1143
.|||.||.||.|..||||||||| || |||||
RBAM_003950__ 1118 GGCTTGCCGTCAACGTATTGGAG-----CAGACGGAATGA 1152
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.