Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06062 and RBAM_003900
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:33
# Commandline: needle
# -asequence dna-align/BSNT_06062___yxeK.1.9828.seq
# -bsequence dna-align/RBAM_003900___yxeK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06062___yxeK-RBAM_003900___yxeK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06062___yxeK-RBAM_003900___yxeK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06062___yxeK
# 2: RBAM_003900___yxeK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1334
# Identity: 1035/1334 (77.6%)
# Similarity: 1035/1334 (77.6%)
# Gaps: 19/1334 ( 1.4%)
# Score: 3960.0
#
#
#=======================================
BSNT_06062___ 1 ATGAC-AAGCAAAAAGAAACAAATCAAATTAGGGGTATTTTTAGCGGGTA 49
||||| |||.|||||| ||||||||.|.||.||.|||.|.|||||.|
RBAM_003900__ 1 ATGACAAAGAAAAAAG----AAATCAAACTCGGTGTGTTTCTCGCGGGCA 46
BSNT_06062___ 50 CAGGCCATCATGTCGCGTCTTGGCGGCACCCGGACGCGCCGTCAGATGCG 99
|.||||||||||||||.||||||.|.||.||..|.||.|||.|.||.|||
RBAM_003900__ 47 CCGGCCATCATGTCGCTTCTTGGAGACATCCTCAGGCACCGGCGGACGCG 96
BSNT_06062___ 100 AGCATGAATTTGGATTATTTTAAAGAGCTTGCGAAAACAGCGGAGCGGGG 149
||||||||||||||||||||.|||||.||.|||||||||||.||||||||
RBAM_003900__ 97 AGCATGAATTTGGATTATTTCAAAGAACTGGCGAAAACAGCTGAGCGGGG 146
BSNT_06062___ 150 CAAGCTGGATATGCTGTTTTTAGCGGACAGCCTTTCAATTGACAGCAAAT 199
.||..||||.|||||||||||.||||||||..|.|||||.|||.||||||
RBAM_003900__ 147 GAAATTGGACATGCTGTTTTTGGCGGACAGTTTATCAATAGACGGCAAAT 196
BSNT_06062___ 200 CACACCCAAATGTATTAACAAGGTTTGAGCCATTCACCCTGCTCTCTGCT 249
||||.||.|||||..|.||..|.||||||||.||.||.|||||.||.||.
RBAM_003900__ 197 CACATCCGAATGTGCTGACGCGCTTTGAGCCGTTTACGCTGCTGTCGGCG 246
BSNT_06062___ 250 TTGGCGCAGGTCACATCAAAAATCGGACTGACAGCAACAGCCTCCACTAC 299
.|.||.|||||||||||....|||||.|||||.||.||.||.||.||.||
RBAM_003900__ 247 CTCGCTCAGGTCACATCCCGCATCGGTCTGACGGCGACCGCGTCTACCAC 296
BSNT_06062___ 300 ATACAGCGAGCCATTCCATATTGCCAGACAGTTTGCCTCATTGGATCATT 349
|||||||||.||.||||||||.||.|||||.|||||.||..|.||.|||.
RBAM_003900__ 297 ATACAGCGAACCGTTCCATATCGCGAGACAATTTGCATCGCTTGACCATC 346
BSNT_06062___ 350 TGTCCAATGGCCGTGCCGGATGGAACGTCGTCACATCATCTATTGAATCA 399
|.|||||.|||||.||.||.|||||.|||||||||||.||.||||||||.
RBAM_003900__ 347 TTTCCAACGGCCGCGCGGGCTGGAATGTCGTCACATCTTCGATTGAATCG 396
BSNT_06062___ 400 ACAGCGCTGAATTTCAGCGGTGAAAAGCACCTAGAACACCATTTGCGCTA 449
||.|||||.|||||||||||.||||||||.||.||.||||||.|..|.||
RBAM_003900__ 397 ACCGCGCTTAATTTCAGCGGCGAAAAGCATCTTGAGCACCATCTCAGATA 446
BSNT_06062___ 450 TCAGCGGGCAGAGGAATTTGTCGAGGTTGTAAAGGGGCTTTGGGATTCAT 499
||||||.||.||.|||||.||.||.||.||.||.||..|.||||||||.|
RBAM_003900__ 447 TCAGCGCGCGGAAGAATTCGTTGAAGTCGTCAAAGGATTATGGGATTCGT 496
BSNT_06062___ 500 GGGAAGAGGACGCCTTTATCCGTAATAAAGAAACGGGTGAATTCTTTGAC 549
||||.||.|||||||||||||||.|.||||||.|.||.|.|||.||.||.
RBAM_003900__ 497 GGGAGGAAGACGCCTTTATCCGTGACAAAGAATCAGGAGCATTTTTCGAT 546
BSNT_06062___ 550 AAAGAAAAAATGCACGAGCTGAACCACAAAGGAGAATATTTCTCGGTTCG 599
|||||.||||||||.||..|||||||.||||||..|||||||||.||..|
RBAM_003900__ 547 AAAGACAAAATGCATGAATTGAACCATAAAGGAACATATTTCTCCGTGAG 596
BSNT_06062___ 600 CGGACCTCTGAACGTTTCAAGAACGCCGCAGGGCCAGCCGGTCATTATCC 649
.||.||..|.||.|||.|..|.||.||.||.||.|..|||||||||||.|
RBAM_003900__ 597 AGGGCCGTTAAATGTTGCCCGCACACCTCAAGGGCGCCCGGTCATTATTC 646
BSNT_06062___ 650 AGGCAGGATCATCAGGAGACGGAAAAGCGCTGGCTGCCAGAACAGCCGAA 699
||||.|||||||||||||||||||||||||||||.||||.|||.||.||.
RBAM_003900__ 647 AGGCCGGATCATCAGGAGACGGAAAAGCGCTGGCCGCCAAAACGGCGGAG 696
BSNT_06062___ 700 GTGATCTTCACAGCACAAAACCACCTGGAATCAGCTCAAGAATTTTATCA 749
||.||.|||||.||.|||||.||..|||||||.||.||.|||||.|||||
RBAM_003900__ 697 GTCATTTTCACCGCGCAAAATCATTTGGAATCCGCGCAGGAATTCTATCA 746
BSNT_06062___ 750 ATCCATTAAAGAACAGGCTGCGGAATTCGGACGTGATCCAGAAAAAATTG 799
|||.|||||||||||.||.||....|||||.||||||||.||||||||.|
RBAM_003900__ 747 ATCTATTAAAGAACAAGCGGCTTCTTTCGGCCGTGATCCTGAAAAAATCG 796
BSNT_06062___ 800 CCATTATGCCGGGTATTTTCCCAATCATTGCTGATACAGAAGAAGCAGCG 849
|.||.||||||||.|||||.||..|.||.||.|||||.|||||||.|||.
RBAM_003900__ 797 CGATCATGCCGGGAATTTTTCCCGTTATCGCCGATACCGAAGAAGAAGCA 846
BSNT_06062___ 850 CAAGCCAAATACAAGGAGCTCCAAGATCTGATTATCCCATCTGTCGGTCT 899
||.||.|||||..|.|||||||||||.||.||.||.||.||||||||.||
RBAM_003900__ 847 CAGGCAAAATATGAAGAGCTCCAAGACCTCATCATTCCGTCTGTCGGCCT 896
BSNT_06062___ 900 GCAAATTCTCCAAAATTACTTAGGCGGAATTGATTTGTCGGCGTATCCGC 949
|.|.|||||.|||||.||..|.|||||..|.||..||||.||.|..||||
RBAM_003900__ 897 GAACATTCTGCAAAACTATCTGGGCGGCGTCGACCTGTCCGCCTGCCCGC 946
BSNT_06062___ 950 TTGATGGGCCGCTGCC-GAAGCTT-GACGCAGAAGCTTCCAATGCGGTGA 997
||||.||.|||||||| ||| || ||.||.||.||.||.|||||.||.|
RBAM_003900__ 947 TTGACGGCCCGCTGCCTGAA--TTGGATGCGGATGCGTCGAATGCCGTTA 994
BSNT_06062___ 998 AGAGCCGCTTCAAGCTTGTTCAGGAAATGGCTGAACGGGACAATATGACG 1047
|.||||||||||||||.||||||||.|||||..||||.||.||.|||||.
RBAM_003900__ 995 AAAGCCGCTTCAAGCTCGTTCAGGAGATGGCCAAACGCGATAACATGACC 1044
BSNT_06062___ 1048 ATACGAGAGCTTTACAAATACGTTGCAGGCTCCAGAGGCCACCATATCTT 1097
||.||.|||||.||||||||.||.||.||.||.||||||||.||||||||
RBAM_003900__ 1045 ATCCGCGAGCTGTACAAATATGTGGCGGGTTCAAGAGGCCATCATATCTT 1094
BSNT_06062___ 1098 CGTCGGCACGCCGGTGCAGCTCGCCGACAAGATGCAGGAATGGGT-GGAT 1146
.|||||.|||||.|..|||||.|||||.||||||.|.|||||||| |||
RBAM_003900__ 1095 TGTCGGAACGCCAGAACAGCTTGCCGATAAGATGGAAGAATGGGTCGGA- 1143
BSNT_06062___ 1147 AAGAAAGCGTGTGACGGGTTTAACATCATGCCTCCGCTTCTTCCAGAAGG 1196
||..||||.||||||||.||.|||||||||||.||||||.|.||.|||||
RBAM_003900__ 1144 AAACAAGCTTGTGACGGTTTCAACATCATGCCGCCGCTTTTGCCTGAAGG 1193
BSNT_06062___ 1197 ----AATTGAAGTGTTTGTTGATCAAGTGGTTCCGATTTTACAGGAGCGC 1242
|.| .|.|||||.||..|||||.|||||||||||||.||.||.
RBAM_003900__ 1194 TCTCACT----CTTTTTGTAGACAAAGTGATTCCGATTTTACAAGAACGG 1239
BSNT_06062___ 1243 GGCGTGTTCAGAAAAGAATATGAAGGCACAACATTAAGAGAGCACTTCGG 1292
|||||||||||||||||.||||||||.||.||..|.|||||.||.|||||
RBAM_003900__ 1240 GGCGTGTTCAGAAAAGAGTATGAAGGAACGACGCTCAGAGAACATTTCGG 1289
BSNT_06062___ 1293 TTTGGAAAAGCCGGTAAACCGCTATGCAAAGTAA 1326
..|||||||.||||.||||||.|||||..|.|||
RBAM_003900__ 1290 ACTGGAAAAACCGGCAAACCGATATGCCGACTAA 1323
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