Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00655 and RBAM_003840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:24
# Commandline: needle
# -asequence dna-align/BSNT_00655___yclF.1.9828.seq
# -bsequence dna-align/RBAM_003840___yclF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00655___yclF-RBAM_003840___yclF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00655___yclF-RBAM_003840___yclF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00655___yclF
# 2: RBAM_003840___yclF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1498
# Identity: 1149/1498 (76.7%)
# Similarity: 1149/1498 (76.7%)
# Gaps: 38/1498 ( 2.5%)
# Score: 4273.0
#
#
#=======================================
BSNT_00655___ 1 ATGGCTTCGATTGATAACGAAAGTATCATTAAAAGCGTCCCGCAAAAAGG 50
.||||.||.||||||||.||...|||.|...|||..||.||||||..|||
RBAM_003840__ 1 GTGGCATCTATTGATAAGGACTCTATAACAGAAACTGTGCCGCAACGAGG 50
BSNT_00655___ 51 GTTCTTTGGTCACCCGCGAGGACTATTTACACTATTTTTCACCGAATTTT 100
.||.||.|||||.||.||.||..|.||.|||||.||||||||||||||||
RBAM_003840__ 51 CTTTTTCGGTCATCCCCGCGGCTTGTTCACACTGTTTTTCACCGAATTTT 100
BSNT_00655___ 101 GGGAGCGTTTCTCTTACTATGGAATGAGAGCAATCTTACTTTACTATTTG 150
|||||||||||||.||||||||.||||||||.||.||.|||||||||||.
RBAM_003840__ 101 GGGAGCGTTTCTCCTACTATGGTATGAGAGCCATATTGCTTTACTATTTA 150
BSNT_00655___ 151 TATACAG-AGACGGTAAACGGAGGGCTCGGCTTTGACAAGGGCACTGCGG 199
||.||.| ||.||.| .|.||.||.|||||||||||.||....||.||.|
RBAM_003840__ 151 TACACGGAAGTCGCT-CATGGCGGTCTCGGCTTTGATAAAACGACCGCAG 199
BSNT_00655___ 200 TTGCCATTATGTCGATCTACGGATCACTCGTATACATGTCCACTATTATT 249
|||||||.|||||.||.|||||.||.||||||||||||||.|...|.||.
RBAM_003840__ 200 TTGCCATCATGTCCATATACGGGTCTCTCGTATACATGTCGAGCGTCATC 249
BSNT_00655___ 250 GGCGGATGGCTCGCTGACCGGGTATTCGGTACCGCAAACACCGTGTTTTA 299
|||||||||||.||.||||||||||||||.||.|||||||||||.|||||
RBAM_003840__ 250 GGCGGATGGCTGGCCGACCGGGTATTCGGCACGGCAAACACCGTATTTTA 299
BSNT_00655___ 300 CGGCGGCATATTCATTATGTTCGGCCACATTGCACTCGCCTATCCGGGCA 349
||||||.||.||.|||||||||||.|||||.||.||.||||..||.||||
RBAM_003840__ 300 CGGCGGAATTTTAATTATGTTCGGGCACATCGCTCTTGCCTTCCCTGGCA 349
BSNT_00655___ 350 GCGCGATCGCATTCTATATCAGCATGGCGCTTATTATTGTCGGAACAGGC 399
||.||...||.||.|.||.|||||||||.||.||.|||.|||||||.|||
RBAM_003840__ 350 GCACGGCGGCGTTTTTTACCAGCATGGCTCTGATCATTATCGGAACCGGC 399
BSNT_00655___ 400 TTATTAAAACCAAACGTTTCAAGCGTGGTTGGGGATCTTTACACGAAAGA 449
.|..|.|||||||||||.||.|||||.||.||.|||.|.||.|||||.||
RBAM_003840__ 400 CTGCTTAAACCAAACGTATCCAGCGTTGTCGGAGATTTATATACGAAGGA 449
BSNT_00655___ 450 AGACCCGCGCCGCGACTCAGGTTTCAGTATTTTCTACATGGGGATTAACC 499
||||..|||||||||||||||||||||.||.||.|||||||||||.||||
RBAM_003840__ 450 AGACGAGCGCCGCGACTCAGGTTTCAGCATCTTTTACATGGGGATCAACC 499
BSNT_00655___ 500 TCGGTGGTTTACTTGCGCCGTTAATTATCGGAACACTCGGACAGAAGTAC 549
||||.||.||.|||||||||.|||||.|||||||||||||||||||||||
RBAM_003840__ 500 TCGGCGGATTGCTTGCGCCGCTAATTGTCGGAACACTCGGACAGAAGTAC 549
BSNT_00655___ 550 AACTATCATCTCGGCTTCGGA-GCTGCCGCGGTCGGAATGCTTCTCGGAC 598
|||||.||..|.||||||||| || |||||||.|||.|||.|.|||||||
RBAM_003840__ 550 AACTACCACTTAGGCTTCGGATGC-GCCGCGGCCGGTATGTTCCTCGGAC 598
BSNT_00655___ 599 TTATCGTATTTGCTTTGACAAGAAAGAAAAACCTCGGGCTTGCAGGTTCC 648
|.||.||.||.|||.|.||.|||||||||.|||||||....|||||.|||
RBAM_003840__ 599 TGATTGTTTTCGCTCTTACGAGAAAGAAATACCTCGGCAAAGCAGGCTCC 648
BSNT_00655___ 649 AATGTGCCGAATCCGCTGTCTAAAAAATCTGCGATTGGCACCGGAATCGG 698
|||||.|||||||||.|.||||||..|||.|.|||.|||||.||||||||
RBAM_003840__ 649 AATGTACCGAATCCGATTTCTAAATCATCAGTGATCGGCACGGGAATCGG 698
BSNT_00655___ 699 TGTTATCATTGTGGCGATCGCAGTGATGATC--TCTG-TACAAACAGGCG 745
.||..||||.|..|| .||.||.||.||| |||| |.|||||.|||.
RBAM_003840__ 699 AGTGGTCATCGCAGC---AGCCGTTATCATCGTTCTGATTCAAACCGGCT 745
BSNT_00655___ 746 TGCTGACGATCAATCGTTTTATCG--ACCTTGTAAGTATTCTCGGTATTT 793
.||||||||||.|.|||.|.||.| ||| ||.|||||.|||||.|||.
RBAM_003840__ 746 GGCTGACGATCCAGCGTGTGATTGATACC--GTCAGTATCCTCGGCATTG 793
BSNT_00655___ 794 TGATTCCTGTCATTTATTTCATCATCATGTTTACAAGCAAAAAAGCGGAC 843
|.|||||.||.|||||.||.|||.|.|||||.||.||||||||||| |||
RBAM_003840__ 794 TCATTCCGGTTATTTACTTTATCGTGATGTTCACGAGCAAAAAAGC-GAC 842
BSNT_00655___ 844 -AAAACAGAAAAATCCCGTCTTGCCGCTTACGTTCCTTTGTTTAT--CAG 890
|||||.||||||||.||.|||||.|||||.|||||..|||||.| ||
RBAM_003840__ 843 GAAAACGGAAAAATCACGGCTTGCGGCTTATGTTCCGCTGTTTGTTGCA- 891
BSNT_00655___ 891 TGCTGTCATGTTCTGGGCCATTCAGGAACAGGGAGCGACCATTCTTGCGG 940
||.|..|||||||||||.||||||||.|||||.|||||.||||||||..
RBAM_003840__ 892 -GCGGCAATGTTCTGGGCGATTCAGGAGCAGGGCGCGACGATTCTTGCTT 940
BSNT_00655___ 941 TATACGCTGATGAACGCATAAAACTTTCATT---GGGCGGATTCGAACTT 987
||||.||.|||.|.||||..|.||||||.|| |||| ||.| |.|||
RBAM_003840__ 941 TATATGCGGATCAGCGCACGAGACTTTCCTTTGCGGGC--ATGC-ATCTT 987
BSNT_00655___ 988 CAGTCATCTTGGTTCCAATCATTAAATCCATTGTTTGTCGTCATTTTTGC 1037
.||||.||.||||||||.||..|.||.||.||.||..||||.|||||.||
RBAM_003840__ 988 GAGTCTTCATGGTTCCAGTCTCTGAACCCGTTATTCATCGTTATTTTCGC 1037
BSNT_00655___ 1038 GCCAATATTCGCATGGCTCTGGATGAAGCTTGGCAAACGCCAGCCGTCTA 1087
|||..|.|||||.|||.||||||||||||||||||||||||||||.||.|
RBAM_003840__ 1038 GCCGGTGTTCGCCTGGATCTGGATGAAGCTTGGCAAACGCCAGCCTTCAA 1087
BSNT_00655___ 1088 CACCAGTTAAATTCTCAATCGGAATTATTTTAGCCGGATTGTCATTTATC 1137
||||..||||||||.|.|||||.|||||..|.||||||||.||||||.|.
RBAM_003840__ 1088 CACCGATTAAATTCGCGATCGGCATTATCCTTGCCGGATTATCATTTTTA 1137
BSNT_00655___ 1138 ATTATGGTATTCCCTGCTATGCAAGGAAAAGAAGCACTCGTAAGCCCGCT 1187
.|.|||||..|.||.|.||||...||.|..|..|..||.||.||||||||
RBAM_003840__ 1138 GTCATGGTGCTTCCGGTTATGGGCGGGAGCGGCGAGCTTGTGAGCCCGCT 1187
BSNT_00655___ 1188 TTGGCTTGTTCTCAGCTTCCTGCTTGTCGTGCTTGGAGAGCTGTGCCTGT 1237
|||||||||.|||||||||||..|.||.||||||||.|||||.|||||.|
RBAM_003840__ 1188 TTGGCTTGTGCTCAGCTTCCTTTTGGTTGTGCTTGGTGAGCTTTGCCTTT 1237
BSNT_00655___ 1238 CTCCAGTCGGTTTATCCGTGACAACGAAACTGGCACCAGCTGCCTTCTCT 1287
|.||.||||||||||||||.|||||||||||.||.||.||.||.|||||.
RBAM_003840__ 1238 CACCGGTCGGTTTATCCGTCACAACGAAACTTGCGCCTGCCGCTTTCTCA 1287
BSNT_00655___ 1288 GCACAGACAATGAGTATGTGGTTTCTGACGAACGCAGCAGC--CCAAGCG 1335
||.|||||.|||||.|||||||||.|.||.||||| |.|| .|||||.
RBAM_003840__ 1288 GCGCAGACGATGAGCATGTGGTTTTTAACAAACGC--CTGCGGTCAAGCC 1335
BSNT_00655___ 1336 ATCAATGCCCAAGTAGCCGGATTGTTTGATAAAATTCCTGAAACAATGTA 1385
.|.||.||..||||||.|||.|||||||||||.|||.|||||.|....||
RBAM_003840__ 1336 CTGAACGCAAAAGTAGTCGGTTTGTTTGATAAGATTTCTGAAGCGGCCTA 1385
BSNT_00655___ 1386 CTTCGGCACCATCGGT-TTGATTTCTATCGTTCTTGGCGGCATTCTCCTG 1434
|||||||.|.|||||| ||| ||||.|||.|||| |||.|||.|..||
RBAM_003840__ 1386 CTTCGGCTCAATCGGTCTTG-TTTCGATCATTCT---CGGTATTATTTTG 1431
BSNT_00655___ 1435 ---CTGCTCTCGCCGATGATCAAACGCGCGATGAAAGGGGTCTTATAA 1479
||.||.||.||..|.||.|||||.|||||||||||.||...||||
RBAM_003840__ 1432 ATTCTTCTGTCTCCCGTCATTAAACGGGCGATGAAAGGCGTACAATAA 1479
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