Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_00642 and RBAM_003780

See Amino acid alignment / Visit BSNT_00642 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:23
# Commandline: needle
#    -asequence dna-align/BSNT_00642___yckK.1.9828.seq
#    -bsequence dna-align/RBAM_003780___yckK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00642___yckK-RBAM_003780___yckK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00642___yckK-RBAM_003780___yckK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00642___yckK
# 2: RBAM_003780___yckK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 821
# Identity:     661/821 (80.5%)
# Similarity:   661/821 (80.5%)
# Gaps:          37/821 ( 4.5%)
# Score: 2680.5
# 
#
#=======================================

BSNT_00642___      1 ATGAAAAAAGCATTATTGGCTTTATTCATGGTCGTAAGTATTGCAGCTCT     50
                     |||||||||||||||||.|||||.||||||.|.||.||.||.|||...||
RBAM_003780__      1 ATGAAAAAAGCATTATTCGCTTTGTTCATGATGGTCAGCATCGCAATGCT     50

BSNT_00642___     51 TGCAGCTTGCGGAGCAGGAAATGACA---------ATC--AGTCAAAAGA     89
                     ||||||.||||||     ||.|.|||         |||  |||||     
RBAM_003780__     51 TGCAGCCTGCGGA-----AACTCACAGGACAGCGGATCTAAGTCA-----     90

BSNT_00642___     90 TAATGCCAAAGATGGCGATCTTTGGGCTTCAATTAAGAAAAAAGGTGTGC    139
                            |||||.|||||||||||||||||..|.|||||||||||.||.|
RBAM_003780__     91 -------AAAGACGGCGATCTTTGGGCTTCTGTCAAGAAAAAAGGCGTAC    133

BSNT_00642___    140 TCACAGTCGGAACGGAAGGAACATATGAGCCGTTCACTTACCACGACAAA    189
                     |.||.|||||.||.||||||||.||.||.|||||.||.|.|||.||.|||
RBAM_003780__    134 TGACCGTCGGTACAGAAGGAACGTACGAACCGTTTACCTTCCATGATAAA    183

BSNT_00642___    190 GACACTGATAAACTGACTGGCTATGATGTCGAAGTTA-TCACAGAAGTCG    238
                     .|.|||||.||||||||.||.||||||||.|||||.| ||| ||||||||
RBAM_003780__    184 AAGACTGACAAACTGACCGGATATGATGTTGAAGTGATTCA-AGAAGTCG    232

BSNT_00642___    239 CAAAACGCCTCGGGCTTAAAGTCGACTTTAAGGAAACACAATGGGACAGC    288
                     |.|||||||||||.||.||||..|||||.||.|||||.||||||||||||
RBAM_003780__    233 CGAAACGCCTCGGTCTGAAAGCTGACTTCAAAGAAACGCAATGGGACAGC    282

BSNT_00642___    289 ATGTTTGCCGGCCTGAATTCCAAACGGTTTGACGTCATTGCCAACCAAGT    338
                     |||||||||||..|.||..|.|||||||||||||||.|||||||||||||
RBAM_003780__    283 ATGTTTGCCGGATTAAACGCGAAACGGTTTGACGTCGTTGCCAACCAAGT    332

BSNT_00642___    339 CGGAAAAACAGATCGTGAAGACAAATATGATTTCTCAGATAAATACACAA    388
                     |||.|||||||..|||||..||.||||||||||.||.|||||||||||||
RBAM_003780__    333 CGGCAAAACAGGCCGTGAGAACCAATATGATTTTTCGGATAAATACACAA    382

BSNT_00642___    389 CATCAAGAGCCGTTGTCGTTACGAAAAAAGACAACAACGATATTAAGTCA    438
                     |.||||..||.||.|||||.|||||||||||||.| |||  |||..|..|
RBAM_003780__    383 CGTCAAATGCAGTCGTCGTGACGAAAAAAGACAGC-ACG--ATTGCGAAA    429

BSNT_00642___    439 GAAGCAGATGTAAAAGGAAAAACATCAGCTCAATCACTGACAAGCAACTA    488
                     ||.||.|||||.||||||||||||.|.|||||.|||.|.||||||||.||
RBAM_003780__    430 GAGGCTGATGTCAAAGGAAAAACAGCGGCTCAGTCATTAACAAGCAATTA    479

BSNT_00642___    489 CAACAAATTAGCTACAAATGCCGGCGCTAAAGTAGAAGGCGTTGAAGGTA    538
                     |||.||||||||.|.|.|.||||||||.|||.|.||||||||||||||.|
RBAM_003780__    480 CAATAAATTAGCGAAAGAAGCCGGCGCGAAAATTGAAGGCGTTGAAGGCA    529

BSNT_00642___    539 TGGCGCAGGCCCTTCAAATGATCCAGCAAGGCCGCGTCGATATGACATAC    588
                     ||||.||..|||||||..|.||.|||||.|||||||..|||.||||.|||
RBAM_003780__    530 TGGCTCAATCCCTTCAGCTCATTCAGCAGGGCCGCGCTGATCTGACTTAC    579

BSNT_00642___    589 AACGATAAACTTGCCGTATTGAACTACTTAAAAACATCTGGCAATAAAAA    638
                     ||||||||.|||||||||.||||||||||||||||.||.|||||||||||
RBAM_003780__    580 AACGATAAGCTTGCCGTACTGAACTACTTAAAAACGTCCGGCAATAAAAA    629

BSNT_00642___    639 CGTGAAAATCGCGTTTGAAACAGGTGATCCTCAGTCA-ACATATTTCACG    687
                     |||||||||||||||||||.||||..|.||.||| || ||.||||||.|.
RBAM_003780__    630 CGTGAAAATCGCGTTTGAAGCAGGCCAGCCGCAG-CAGACGTATTTCGCA    678

BSNT_00642___    688 TTCCGTAAAGGAAGCGGCGAGGTTGTTGA-TCAAGTCAACAAAGCATTAA    736
                     |||||.||||||||||||||..||| ||| |||.|||||||||||.||||
RBAM_003780__    679 TTCCGAAAAGGAAGCGGCGAACTTG-TGACTCACGTCAACAAAGCGTTAA    727

BSNT_00642___    737 AAGAAATGAAAGAGGACGGGACTCTTTCTAAAATTTCTAAAAAATGGTTC    786
                     ||||||||||||||||||||||||||||||||||..|.||||||||||||
RBAM_003780__    728 AAGAAATGAAAGAGGACGGGACTCTTTCTAAAATAGCGAAAAAATGGTTC    777

BSNT_00642___    787 GGCGAAGATGTTTCTAAATAA    807
                     |||||||||||||||||.|||
RBAM_003780__    778 GGCGAAGATGTTTCTAAGTAA    798


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00642 and RBAM_003780

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
