Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00629 and RBAM_003710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:22
# Commandline: needle
# -asequence dna-align/BSNT_00629___ycxB.1.9828.seq
# -bsequence dna-align/RBAM_003710.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00629___ycxB-RBAM_003710.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00629___ycxB-RBAM_003710.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00629___ycxB
# 2: RBAM_003710
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 635
# Identity: 239/635 (37.6%)
# Similarity: 239/635 (37.6%)
# Gaps: 316/635 (49.8%)
# Score: 450.5
#
#
#=======================================
BSNT_00629___ 1 ATGATTCAATATGCTAGTGAAAGTATCAATCTTCCAGGAGAAATCGCTTT 50
RBAM_003710 0 -------------------------------------------------- 0
BSNT_00629___ 51 TAAGGATGTAAGAGAAATCTTTTTTTATCAAATCGCAAAAATATCATGCT 100
RBAM_003710 0 -------------------------------------------------- 0
BSNT_00629___ 101 TTTACTTTCTGTTGTTTTGCACCATATTTGCTGCAGTTAACTTCATTAAC 150
||.|||
RBAM_003710 1 --------------------------------------------ATGAAC 6
BSNT_00629___ 151 GGATGGCCCCGTATCGTTTATGGCAG----TGACGCG-----------CT 185
|| |||| |||...|||.| ||..||| ||
RBAM_003710 7 GG-----CCCG----GTTACAGGCGGCACATGGGGCGTCAGAGCTCTCCT 47
BSNT_00629___ 186 TAA----CTTGTTTATGAACAGTATGTTGATTATCGTGATGTCCGTTCTG 231
.|| |||| ||| .|| |||||.||....||.|.||
RBAM_003710 48 GAATTTCCTTG--------CAG-CTG-TGATTCTCTCTTTGGCAGT---- 83
BSNT_00629___ 232 TTTACACTGCTGCTC-----------CTCCTTCTTCTATATGTGAAGT-T 269
||| |.||.|| |||.|||||| .|| |
RBAM_003710 84 ----CAC-GGTGATCGCAACGGCAATCTCATTCTTC---------CGTCT 119
BSNT_00629___ 270 TTCCAGAGCATACAAGAAGAACGAA----CGGATGAAAT-TG--AAAAGA 312
||.||||.||||||| |||||| |||.|||||| || |.|||.
RBAM_003710 120 TTACAGAACATACAA----AACGAATCAGCGGCTGAAATCTGCCAGAAGT 165
BSNT_00629___ 313 A--------CATATACTCTGAA----CCAAGAAGGAATTCGTATATGTTC 350
| |||...|||.||| ||||.|| |
RBAM_003710 166 ATTACGATTCATCAGCTCGGAATCAGCCAAAAA----------------C 199
BSNT_00629___ 351 TAAAAAA------TATGACCTCATTTTCAATTGGGATGAAATTACAGCTG 394
.|||||| .|| ||.||||.|| ||||||||| |||
RBAM_003710 200 AAAAAAACGCAAGCAT----TCTTTTTGAA-TGGGATGAA-------CTG 237
BSNT_00629___ 395 TTTTC-------GAATATAAAAATATCTTCAGGGTCAAT-----ACATCA 432
.|.|| ||..|.|||.||||.|| ||.|| |||||.
RBAM_003710 238 CTCTCGGCTAGGGAGCACAAAGATATGTT-----TCGATTACAAACATCG 282
BSNT_00629___ 433 AGT---GGCCAATA-TATTGCGATCCCCAAAC-ATTTTTTTCACTCCGAA 477
.|| || ||.| |..||| |.||.|||| |.||||.| |.||..||
RBAM_003710 283 GGTTACGG--AACACTTCTGC--TGCCGAAACGACTTTTCT-ATTCGCAA 327
BSNT_00629___ 478 GAGGAGATGAACAGATTCAAGGAGATTATCCTTAAAAATACCGAAACAAA 527
.|.||.||...|...||||.|.|.||..|||...||||| ..|||..|
RBAM_003710 328 AAAGATATCGCCGTTTTCAGGCAAATGCTCCGGGAAAAT-GTGAATGA-- 374
BSNT_00629___ 528 AAAACTCAAATTTA----AAAAGGATCAGCATTGA 558
.|||.||| ||.||.||.|
RBAM_003710 375 ------GAAAGTTAATGTAACAGAATAA------- 396
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