Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00613 and RBAM_003620

See Amino acid alignment / Visit BSNT_00613 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:21
# Commandline: needle
#    -asequence dna-align/BSNT_00613___hxlB.1.9828.seq
#    -bsequence dna-align/RBAM_003620___hxlB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00613___hxlB-RBAM_003620___hxlB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00613___hxlB-RBAM_003620___hxlB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00613___hxlB
# 2: RBAM_003620___hxlB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 574
# Identity:     411/574 (71.6%)
# Similarity:   411/574 (71.6%)
# Gaps:          32/574 ( 5.6%)
# Score: 1373.0
# 
#
#=======================================

BSNT_00613___      1 ATGAAAACGACTGAATACGTAGCGGAAATTCTCAATGAGTTA---CACAA     47
                     ||||||||||||||||||.||...|||||.||.|||||..||   |.|| 
RBAM_003620__      1 ATGAAAACGACTGAATACTTACATGAAATACTAAATGAAATATCCCGCA-     49

BSNT_00613___     48 TTCAGCAGC-TTATATTTC---TAATGAAGAGGCTGACCAGCTTGCCGAT     93
                       |.||||| ||| ||.||   .|.||||   ||||||.|||||||.|||
RBAM_003620__     50 --CCGCAGCATTA-ATATCCGACAGTGAA---GCTGACAAGCTTGCGGAT     93

BSNT_00613___     94 CACATTCTGTCATCCCACCAAATTTTCACCGCGGGTGCGGGTCGGTCTGG    143
                     ||.|||.|.||..|..|.|||||.|||||..|.||.|||||.||.||.||
RBAM_003620__     94 CAGATTTTATCGGCAGATCAAATCTTCACGTCCGGAGCGGGACGTTCCGG    143

BSNT_00613___    144 CCTGATGGCAAAATCCTTCGCGATGAGACTGATGCACATGGGCTTCAACG    193
                     |.|.|||||.|||.|.|||||.|||||..||||||||||.||..|.||||
RBAM_003620__    144 CTTTATGGCTAAAGCGTTCGCCATGAGGATGATGCACATCGGTCTGAACG    193

BSNT_00613___    194 CCCATATAGTAGGTGAGATTCTCACTCCGCCGCTCGCCGAAGGAGATCTA    243
                     |..|.||.||.|||||||..||.||.||.||.|||...|||||.|.|||.
RBAM_003620__    194 CTTACATCGTCGGTGAGACGCTTACCCCTCCCCTCCAAGAAGGCGGTCTC    243

BSNT_00613___    244 GTTATTATCGGCTCAGGATCAGGCGAGACAAAGAGCTTGATTCATACCGC    293
                     ||.||.|||||||||||.||||||||.|||||.||..||.|||||||.||
RBAM_003620__    244 GTCATCATCGGCTCAGGCTCAGGCGAAACAAAAAGTCTGCTTCATACGGC    293

BSNT_00613___    294 AGCAAAAGCAAAAAG-CTTACACGGAATTGTTGCCGCTTTAACCATCAAT    342
                     .|.||||||.||||| |||| ||||.||..|..|.||.|||||.||.||.
RBAM_003620__    294 TGAAAAAGCCAAAAGCCTTA-ACGGCATCATCACTGCATTAACGATTAAC    342

BSNT_00613___    343 CCGGAATCAAGCGTCGGAAAACAAGCGGACCTCATCATCAGAATGCCTGG    392
                     ||.||.|||||..||||.||||..|||||.||.|..||.|..||.||.||
RBAM_003620__    343 CCCGACTCAAGTCTCGGCAAACTTGCGGATCTTACAATAACGATTCCCGG    392

BSNT_00613___    393 TTCTCCTAA-----AGACCCGTCAAACGGAAGCTATAAA-ACCATTCAGC    436
                     .||||||||     |||||.|     ||| ||..|.||| ||.|||||||
RBAM_003620__    393 CTCTCCTAAGGAAGAGACCGG-----CGG-AGACAGAAAGACGATTCAGC    436

BSNT_00613___    437 CAATGGGATCATTATTTGAACAAACTTTGCTGCTATTCTATGATGCAGTG    486
                     |.|||||.||.|||||.|||||||||.|.|||||.||.||.|||||.||.
RBAM_003620__    437 CGATGGGTTCTTTATTCGAACAAACTCTTCTGCTGTTTTACGATGCGGTT    486

BSNT_00613___    487 ATTTTAAAACTCATGGAGAAAAAAGGACTCGATTCTG-AAACTATGTTCA    535
                     |||.|||||.|||||||||||||||.|.|..||||.| |.|| |||||.|
RBAM_003620__    487 ATTCTAAAAATCATGGAGAAAAAAGAATTGAATTCAGCAGAC-ATGTTTA    535

BSNT_00613___    536 CTCACCACGCAAACCTTGAATAG-    558
                     |..|.||.||.||.||.|||| | 
RBAM_003620__    536 CAAAGCATGCGAATCTGGAAT-GA    558


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