Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00613 and RBAM_003620
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:21
# Commandline: needle
# -asequence dna-align/BSNT_00613___hxlB.1.9828.seq
# -bsequence dna-align/RBAM_003620___hxlB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00613___hxlB-RBAM_003620___hxlB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00613___hxlB-RBAM_003620___hxlB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00613___hxlB
# 2: RBAM_003620___hxlB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 574
# Identity: 411/574 (71.6%)
# Similarity: 411/574 (71.6%)
# Gaps: 32/574 ( 5.6%)
# Score: 1373.0
#
#
#=======================================
BSNT_00613___ 1 ATGAAAACGACTGAATACGTAGCGGAAATTCTCAATGAGTTA---CACAA 47
||||||||||||||||||.||...|||||.||.|||||..|| |.||
RBAM_003620__ 1 ATGAAAACGACTGAATACTTACATGAAATACTAAATGAAATATCCCGCA- 49
BSNT_00613___ 48 TTCAGCAGC-TTATATTTC---TAATGAAGAGGCTGACCAGCTTGCCGAT 93
|.||||| ||| ||.|| .|.|||| ||||||.|||||||.|||
RBAM_003620__ 50 --CCGCAGCATTA-ATATCCGACAGTGAA---GCTGACAAGCTTGCGGAT 93
BSNT_00613___ 94 CACATTCTGTCATCCCACCAAATTTTCACCGCGGGTGCGGGTCGGTCTGG 143
||.|||.|.||..|..|.|||||.|||||..|.||.|||||.||.||.||
RBAM_003620__ 94 CAGATTTTATCGGCAGATCAAATCTTCACGTCCGGAGCGGGACGTTCCGG 143
BSNT_00613___ 144 CCTGATGGCAAAATCCTTCGCGATGAGACTGATGCACATGGGCTTCAACG 193
|.|.|||||.|||.|.|||||.|||||..||||||||||.||..|.||||
RBAM_003620__ 144 CTTTATGGCTAAAGCGTTCGCCATGAGGATGATGCACATCGGTCTGAACG 193
BSNT_00613___ 194 CCCATATAGTAGGTGAGATTCTCACTCCGCCGCTCGCCGAAGGAGATCTA 243
|..|.||.||.|||||||..||.||.||.||.|||...|||||.|.|||.
RBAM_003620__ 194 CTTACATCGTCGGTGAGACGCTTACCCCTCCCCTCCAAGAAGGCGGTCTC 243
BSNT_00613___ 244 GTTATTATCGGCTCAGGATCAGGCGAGACAAAGAGCTTGATTCATACCGC 293
||.||.|||||||||||.||||||||.|||||.||..||.|||||||.||
RBAM_003620__ 244 GTCATCATCGGCTCAGGCTCAGGCGAAACAAAAAGTCTGCTTCATACGGC 293
BSNT_00613___ 294 AGCAAAAGCAAAAAG-CTTACACGGAATTGTTGCCGCTTTAACCATCAAT 342
.|.||||||.||||| |||| ||||.||..|..|.||.|||||.||.||.
RBAM_003620__ 294 TGAAAAAGCCAAAAGCCTTA-ACGGCATCATCACTGCATTAACGATTAAC 342
BSNT_00613___ 343 CCGGAATCAAGCGTCGGAAAACAAGCGGACCTCATCATCAGAATGCCTGG 392
||.||.|||||..||||.||||..|||||.||.|..||.|..||.||.||
RBAM_003620__ 343 CCCGACTCAAGTCTCGGCAAACTTGCGGATCTTACAATAACGATTCCCGG 392
BSNT_00613___ 393 TTCTCCTAA-----AGACCCGTCAAACGGAAGCTATAAA-ACCATTCAGC 436
.|||||||| |||||.| ||| ||..|.||| ||.|||||||
RBAM_003620__ 393 CTCTCCTAAGGAAGAGACCGG-----CGG-AGACAGAAAGACGATTCAGC 436
BSNT_00613___ 437 CAATGGGATCATTATTTGAACAAACTTTGCTGCTATTCTATGATGCAGTG 486
|.|||||.||.|||||.|||||||||.|.|||||.||.||.|||||.||.
RBAM_003620__ 437 CGATGGGTTCTTTATTCGAACAAACTCTTCTGCTGTTTTACGATGCGGTT 486
BSNT_00613___ 487 ATTTTAAAACTCATGGAGAAAAAAGGACTCGATTCTG-AAACTATGTTCA 535
|||.|||||.|||||||||||||||.|.|..||||.| |.|| |||||.|
RBAM_003620__ 487 ATTCTAAAAATCATGGAGAAAAAAGAATTGAATTCAGCAGAC-ATGTTTA 535
BSNT_00613___ 536 CTCACCACGCAAACCTTGAATAG- 558
|..|.||.||.||.||.|||| |
RBAM_003620__ 536 CAAAGCATGCGAATCTGGAAT-GA 558
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