Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00608 and RBAM_003590
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:21
# Commandline: needle
# -asequence dna-align/BSNT_00608___yckE.1.9828.seq
# -bsequence dna-align/RBAM_003590___yckE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00608___yckE-RBAM_003590___yckE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00608___yckE-RBAM_003590___yckE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00608___yckE
# 2: RBAM_003590___yckE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1454
# Identity: 1130/1454 (77.7%)
# Similarity: 1130/1454 (77.7%)
# Gaps: 37/1454 ( 2.5%)
# Score: 4303.0
#
#
#=======================================
BSNT_00608___ 1 ATGATCCACCAGCATCCAAAA-----TCTTTTCC--GAAACATTTTTTGT 43
||||| .|||..|||| .||.|||| ||.||| |||.|.|
RBAM_003590__ 1 ATGAT------ACATAAAAAACAGGGCCTGTTCCCTGATACA-TTTCTAT 43
BSNT_00608___ 44 GGGGCTCTGCTTCTGCAGCGTACCAGATTGAAGGCGCTTGGAATGAAGAT 93
||||.||.||.||.||.||.||.|||.|||||||.||.||||||.||||.
RBAM_003590__ 44 GGGGGTCAGCCTCGGCTGCCTATCAGGTTGAAGGAGCCTGGAATAAAGAC 93
BSNT_00608___ 94 GGCAAAGGCCCTTCTGTTTGGGATGTGTTTACGAAAATACCGGGCAAAAC 143
||.|||||.|||||.||.|||||..|.||.||||||||||||||.|||||
RBAM_003590__ 94 GGTAAAGGACCTTCAGTATGGGACTTATTCACGAAAATACCGGGTAAAAC 143
BSNT_00608___ 144 GTTTAAAGGAACCAATGGCGAGATTGCGGTTGACCATTATCACCGATTTA 193
|||||||||..|.||||||||.|..||.||.|.|||||||.|.||.|.||
RBAM_003590__ 144 GTTTAAAGGCTCAAATGGCGATACAGCAGTCGGCCATTATGAGCGTTATA 193
BSNT_00608___ 194 AAGAAGATGTCGCTCTGATGGCTGAGATGGGGTTAAAAGCATATCGATTT 243
||||||||.||||..|||||||.||.|||||.||.|||||.||.||.|||
RBAM_003590__ 194 AAGAAGATATCGCCTTGATGGCAGAAATGGGTTTGAAAGCTTACCGCTTT 243
BSNT_00608___ 244 TCCGTCAGCTGGCCACGGGTTTTTCCAAAAGGAAAAGGAGAGATCAATGA 293
||.|||||||||||..|..|||||||.||.||.|.|||.||.|||||.||
RBAM_003590__ 244 TCTGTCAGCTGGCCGAGAATTTTTCCGAATGGCAGAGGGGAAATCAACGA 293
BSNT_00608___ 294 AGCAGGTCTAGCGTTTTACGATAG-TCTGATTGATGAATTGCTTTCTCAT 342
|.||||..|.||.|||||||| || .|||||.|||||||||.|||||.|.
RBAM_003590__ 294 ATCAGGGATCGCATTTTACGA-AGACCTGATCGATGAATTGATTTCTAAC 342
BSNT_00608___ 343 CACATCGAGCCGGTTCTGACTTTATATCACTGGGATTTGCCTCAAGCGCT 392
.|.||.||||||||.||||||.|.|||||.|||||.||||||||..||||
RBAM_003590__ 343 GATATTGAGCCGGTGCTGACTCTTTATCATTGGGACTTGCCTCAGACGCT 392
BSNT_00608___ 393 TATGGACGAATACGGCGGGTTTGAATCCAGAAACATCATAGAGGATTTTA 442
.|||||.|||||||||||.||||||||.|||||.||.||.||.|||||||
RBAM_003590__ 393 GATGGATGAATACGGCGGCTTTGAATCAAGAAAAATTATTGATGATTTTA 442
BSNT_00608___ 443 ATCACTACTGTATTACTCTTTATAAACGTTTTGGAGACAGGGTGAAATAT 492
||.|.|||||.|||.|..|.||.|||.|.||.|..|.||.||||||.||.
RBAM_003590__ 443 ATGATTACTGCATTGCGTTATACAAAAGATTCGCCGGCAAGGTGAAGTAC 492
BSNT_00608___ 493 TGGGTTACGTTAAATGAACAGAACTACAATTTTAATCACGGATTTATTAC 542
|||||.||||||||.||.|||||.||.||||||.||.||||.||||||||
RBAM_003590__ 493 TGGGTCACGTTAAACGAGCAGAATTATAATTTTCATAACGGGTTTATTAC 542
BSNT_00608___ 543 AGCCATG--CATCCGCCTGGAGTGAAAGACAGAAAACGATTTTACGAAGC 590
||| || ||||||||.||.||.||.|||||||||||||||||.|||||
RBAM_003590__ 543 AGC--TGCACATCCGCCCGGCGTAAAGGACAGAAAACGATTTTATGAAGC 590
BSNT_00608___ 591 AAACCATATTGCGTTTCTGGCTAATGCAAAAGCCATCGAATCATTTAGAG 640
.||.|||||.||.|||.|.||||||||.|||||.||.|||||.||.|||.
RBAM_003590__ 591 GAATCATATCGCATTTTTAGCTAATGCCAAAGCGATTGAATCCTTCAGAC 640
BSNT_00608___ 641 AATATGTGCCTGAAGGCAAAATAGGTCCTAGCTTTGCATATTCTCCGGCT 690
|||||||.|||||.||....||.||.||.|||||.||.|||||.||||||
RBAM_003590__ 641 AATATGTTCCTGACGGTTTGATCGGCCCGAGCTTCGCTTATTCACCGGCT 690
BSNT_00608___ 691 TA-CCCTTTATTAAGCCATCCAGAGGATAT-ACTGGCATTTGAAAACGCC 738
|| ||..||| .|||.|||||.||.||.|| ||| ||||||||||||||.
RBAM_003590__ 691 TATCCGCTTA-CAAGTCATCCTGAAGACATAACT-GCATTTGAAAACGCA 738
BSNT_00608___ 739 GAAGAATTTATGAACAATTGGTGGCTTGACATGTATTGCTGGGGAACCTA 788
||.|||||||||||..|||||||||||||.|||||||||.||||.||.||
RBAM_003590__ 739 GAGGAATTTATGAATCATTGGTGGCTTGATATGTATTGCCGGGGGACTTA 788
BSNT_00608___ 789 CCCGCAAATTCCATTCCGCTACTT---GGAAAAACAGGGATGGGCGCCGA 835
.|||||||||||.|||...||.|| ||||| ||||.||||||||..
RBAM_003590__ 789 TCCGCAAATTCCTTTCAATTATTTAAAGGAAA---AGGGCTGGGCGCCCG 835
BSNT_00608___ 836 CAATCGAAGCAGGAGATATCGAGCTGCTTGCCAAAGGGAAGCCTGATTTT 885
|.||.|||||.||.|||||.||..|||||||.|||||.|||||.||||||
RBAM_003590__ 836 CCATTGAAGCCGGGGATATGGAATTGCTTGCAAAAGGCAAGCCGGATTTT 885
BSNT_00608___ 886 GTAGGTGTCAATTATTATCAGACGATCACCTATGAACGAAATCCGCTTGA 935
.|.|||||.|||||||||||||||||.||.||.|||.|||||||.|||||
RBAM_003590__ 886 ATCGGTGTTAATTATTATCAGACGATTACGTACGAAAGAAATCCTCTTGA 935
BSNT_00608___ 936 TGGTGTGTCAGAAGGGAAAATGAATACGACAGGCCA-AAAGGGAACCAAT 984
.|||||.||.||.|||||||||||.|||||.||.|| |||||| ||.||.
RBAM_003590__ 936 CGGTGTATCGGAGGGGAAAATGAACACGACTGGTCAGAAAGGG-ACAAAC 984
BSNT_00608___ 985 CAGGAGACGGGGATACCCGGAGTGTTCAAAACGAAAAAAAATCCGCATCT 1034
|||||.||.||.|||||.||..||||.|||||||||||.||||||.|.||
RBAM_003590__ 985 CAGGATACCGGTATACCAGGTCTGTTTAAAACGAAAAAGAATCCGAACCT 1034
BSNT_00608___ 1035 GACAACAAGCAACTGGGATTGGACAATTGACGCAATTGGGCTGCGTATCG 1084
....||.||.||.|||||||||||.||||||.|.||.||.|||||.||||
RBAM_003590__ 1035 TGTGACGAGTAATTGGGATTGGACGATTGACCCGATAGGTCTGCGCATCG 1084
BSNT_00608___ 1085 GTCTTCGCCGAATTACAAGCCGCTATCAGCTTCCAGTGTTTATAACAGAG 1134
|.||.||.||.||.||.|||||||||.||||.||.||.|||||||||||.
RBAM_003590__ 1085 GCCTCCGGCGTATAACGAGCCGCTATGAGCTGCCGGTTTTTATAACAGAA 1134
BSNT_00608___ 1135 AACGGTTTGGGTGAATTTGATAA---AGTTGAGGACGGCACTGTACAGGA 1181
|||||..||||.|||||.||||| ||..||.||||||.|..|.|||||
RBAM_003590__ 1135 AACGGGCTGGGGGAATTCGATAAAATAGAAGAAGACGGCTCAATTCAGGA 1184
BSNT_00608___ 1182 TGATTATCGAATTGATTATTTACGTTCGCATCTTGAGCAATGCAGACAAG 1231
|||.||..|||||||.||||||||.||.||||||||.||.||||||.|.|
RBAM_003590__ 1185 TGACTACAGAATTGACTATTTACGCTCCCATCTTGAACAGTGCAGAGAGG 1234
BSNT_00608___ 1232 CCATCAGTGACGGTGTTGATTTAATCGGCTATTGCAGCTGGTCGTTTACT 1281
||||.||||||||.|||.||.|.||||||||.|||||||||||.||.||.
RBAM_003590__ 1235 CCATTAGTGACGGAGTTCATCTCATCGGCTACTGCAGCTGGTCATTCACG 1284
BSNT_00608___ 1282 GATCTGTTAAGCTGGCTGAACGGCTACCAAAAAAGATACGGATTTGTATA 1331
||||||||||||||||||||||||||.||||||.|.|||||.|||||.||
RBAM_003590__ 1285 GATCTGTTAAGCTGGCTGAACGGCTATCAAAAACGCTACGGTTTTGTCTA 1334
BSNT_00608___ 1332 TGTCAATCGTGATGAAGAA-AGCACATACGATTTAAAACGCTTGAAGAAA 1380
|.|||||||.||||||||| |..| |.|.|||||||||||..|.|.||||
RBAM_003590__ 1335 TATCAATCGAGATGAAGAAGATGA-AAAGGATTTAAAACGGATCAGGAAA 1383
BSNT_00608___ 1381 AAAAGCTTTTATTGGTATCAAGATGTCATCAAGACGAACGGAGAAAGTTT 1430
|||||.|||||||||||.||..||||.||..|.||.|||||..|||||||
RBAM_003590__ 1384 AAAAGTTTTTATTGGTACCAGAATGTAATTGAAACAAACGGTAAAAGTTT 1433
BSNT_00608___ 1431 ATAA 1434
||||
RBAM_003590__ 1434 ATAA 1437
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