Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00608 and RBAM_003590

See Amino acid alignment / Visit BSNT_00608 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:21
# Commandline: needle
#    -asequence dna-align/BSNT_00608___yckE.1.9828.seq
#    -bsequence dna-align/RBAM_003590___yckE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00608___yckE-RBAM_003590___yckE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00608___yckE-RBAM_003590___yckE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00608___yckE
# 2: RBAM_003590___yckE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1454
# Identity:    1130/1454 (77.7%)
# Similarity:  1130/1454 (77.7%)
# Gaps:          37/1454 ( 2.5%)
# Score: 4303.0
# 
#
#=======================================

BSNT_00608___      1 ATGATCCACCAGCATCCAAAA-----TCTTTTCC--GAAACATTTTTTGT     43
                     |||||      .|||..||||     .||.||||  ||.||| |||.|.|
RBAM_003590__      1 ATGAT------ACATAAAAAACAGGGCCTGTTCCCTGATACA-TTTCTAT     43

BSNT_00608___     44 GGGGCTCTGCTTCTGCAGCGTACCAGATTGAAGGCGCTTGGAATGAAGAT     93
                     ||||.||.||.||.||.||.||.|||.|||||||.||.||||||.||||.
RBAM_003590__     44 GGGGGTCAGCCTCGGCTGCCTATCAGGTTGAAGGAGCCTGGAATAAAGAC     93

BSNT_00608___     94 GGCAAAGGCCCTTCTGTTTGGGATGTGTTTACGAAAATACCGGGCAAAAC    143
                     ||.|||||.|||||.||.|||||..|.||.||||||||||||||.|||||
RBAM_003590__     94 GGTAAAGGACCTTCAGTATGGGACTTATTCACGAAAATACCGGGTAAAAC    143

BSNT_00608___    144 GTTTAAAGGAACCAATGGCGAGATTGCGGTTGACCATTATCACCGATTTA    193
                     |||||||||..|.||||||||.|..||.||.|.|||||||.|.||.|.||
RBAM_003590__    144 GTTTAAAGGCTCAAATGGCGATACAGCAGTCGGCCATTATGAGCGTTATA    193

BSNT_00608___    194 AAGAAGATGTCGCTCTGATGGCTGAGATGGGGTTAAAAGCATATCGATTT    243
                     ||||||||.||||..|||||||.||.|||||.||.|||||.||.||.|||
RBAM_003590__    194 AAGAAGATATCGCCTTGATGGCAGAAATGGGTTTGAAAGCTTACCGCTTT    243

BSNT_00608___    244 TCCGTCAGCTGGCCACGGGTTTTTCCAAAAGGAAAAGGAGAGATCAATGA    293
                     ||.|||||||||||..|..|||||||.||.||.|.|||.||.|||||.||
RBAM_003590__    244 TCTGTCAGCTGGCCGAGAATTTTTCCGAATGGCAGAGGGGAAATCAACGA    293

BSNT_00608___    294 AGCAGGTCTAGCGTTTTACGATAG-TCTGATTGATGAATTGCTTTCTCAT    342
                     |.||||..|.||.|||||||| || .|||||.|||||||||.|||||.|.
RBAM_003590__    294 ATCAGGGATCGCATTTTACGA-AGACCTGATCGATGAATTGATTTCTAAC    342

BSNT_00608___    343 CACATCGAGCCGGTTCTGACTTTATATCACTGGGATTTGCCTCAAGCGCT    392
                     .|.||.||||||||.||||||.|.|||||.|||||.||||||||..||||
RBAM_003590__    343 GATATTGAGCCGGTGCTGACTCTTTATCATTGGGACTTGCCTCAGACGCT    392

BSNT_00608___    393 TATGGACGAATACGGCGGGTTTGAATCCAGAAACATCATAGAGGATTTTA    442
                     .|||||.|||||||||||.||||||||.|||||.||.||.||.|||||||
RBAM_003590__    393 GATGGATGAATACGGCGGCTTTGAATCAAGAAAAATTATTGATGATTTTA    442

BSNT_00608___    443 ATCACTACTGTATTACTCTTTATAAACGTTTTGGAGACAGGGTGAAATAT    492
                     ||.|.|||||.|||.|..|.||.|||.|.||.|..|.||.||||||.||.
RBAM_003590__    443 ATGATTACTGCATTGCGTTATACAAAAGATTCGCCGGCAAGGTGAAGTAC    492

BSNT_00608___    493 TGGGTTACGTTAAATGAACAGAACTACAATTTTAATCACGGATTTATTAC    542
                     |||||.||||||||.||.|||||.||.||||||.||.||||.||||||||
RBAM_003590__    493 TGGGTCACGTTAAACGAGCAGAATTATAATTTTCATAACGGGTTTATTAC    542

BSNT_00608___    543 AGCCATG--CATCCGCCTGGAGTGAAAGACAGAAAACGATTTTACGAAGC    590
                     |||  ||  ||||||||.||.||.||.|||||||||||||||||.|||||
RBAM_003590__    543 AGC--TGCACATCCGCCCGGCGTAAAGGACAGAAAACGATTTTATGAAGC    590

BSNT_00608___    591 AAACCATATTGCGTTTCTGGCTAATGCAAAAGCCATCGAATCATTTAGAG    640
                     .||.|||||.||.|||.|.||||||||.|||||.||.|||||.||.|||.
RBAM_003590__    591 GAATCATATCGCATTTTTAGCTAATGCCAAAGCGATTGAATCCTTCAGAC    640

BSNT_00608___    641 AATATGTGCCTGAAGGCAAAATAGGTCCTAGCTTTGCATATTCTCCGGCT    690
                     |||||||.|||||.||....||.||.||.|||||.||.|||||.||||||
RBAM_003590__    641 AATATGTTCCTGACGGTTTGATCGGCCCGAGCTTCGCTTATTCACCGGCT    690

BSNT_00608___    691 TA-CCCTTTATTAAGCCATCCAGAGGATAT-ACTGGCATTTGAAAACGCC    738
                     || ||..||| .|||.|||||.||.||.|| ||| ||||||||||||||.
RBAM_003590__    691 TATCCGCTTA-CAAGTCATCCTGAAGACATAACT-GCATTTGAAAACGCA    738

BSNT_00608___    739 GAAGAATTTATGAACAATTGGTGGCTTGACATGTATTGCTGGGGAACCTA    788
                     ||.|||||||||||..|||||||||||||.|||||||||.||||.||.||
RBAM_003590__    739 GAGGAATTTATGAATCATTGGTGGCTTGATATGTATTGCCGGGGGACTTA    788

BSNT_00608___    789 CCCGCAAATTCCATTCCGCTACTT---GGAAAAACAGGGATGGGCGCCGA    835
                     .|||||||||||.|||...||.||   |||||   ||||.||||||||..
RBAM_003590__    789 TCCGCAAATTCCTTTCAATTATTTAAAGGAAA---AGGGCTGGGCGCCCG    835

BSNT_00608___    836 CAATCGAAGCAGGAGATATCGAGCTGCTTGCCAAAGGGAAGCCTGATTTT    885
                     |.||.|||||.||.|||||.||..|||||||.|||||.|||||.||||||
RBAM_003590__    836 CCATTGAAGCCGGGGATATGGAATTGCTTGCAAAAGGCAAGCCGGATTTT    885

BSNT_00608___    886 GTAGGTGTCAATTATTATCAGACGATCACCTATGAACGAAATCCGCTTGA    935
                     .|.|||||.|||||||||||||||||.||.||.|||.|||||||.|||||
RBAM_003590__    886 ATCGGTGTTAATTATTATCAGACGATTACGTACGAAAGAAATCCTCTTGA    935

BSNT_00608___    936 TGGTGTGTCAGAAGGGAAAATGAATACGACAGGCCA-AAAGGGAACCAAT    984
                     .|||||.||.||.|||||||||||.|||||.||.|| |||||| ||.||.
RBAM_003590__    936 CGGTGTATCGGAGGGGAAAATGAACACGACTGGTCAGAAAGGG-ACAAAC    984

BSNT_00608___    985 CAGGAGACGGGGATACCCGGAGTGTTCAAAACGAAAAAAAATCCGCATCT   1034
                     |||||.||.||.|||||.||..||||.|||||||||||.||||||.|.||
RBAM_003590__    985 CAGGATACCGGTATACCAGGTCTGTTTAAAACGAAAAAGAATCCGAACCT   1034

BSNT_00608___   1035 GACAACAAGCAACTGGGATTGGACAATTGACGCAATTGGGCTGCGTATCG   1084
                     ....||.||.||.|||||||||||.||||||.|.||.||.|||||.||||
RBAM_003590__   1035 TGTGACGAGTAATTGGGATTGGACGATTGACCCGATAGGTCTGCGCATCG   1084

BSNT_00608___   1085 GTCTTCGCCGAATTACAAGCCGCTATCAGCTTCCAGTGTTTATAACAGAG   1134
                     |.||.||.||.||.||.|||||||||.||||.||.||.|||||||||||.
RBAM_003590__   1085 GCCTCCGGCGTATAACGAGCCGCTATGAGCTGCCGGTTTTTATAACAGAA   1134

BSNT_00608___   1135 AACGGTTTGGGTGAATTTGATAA---AGTTGAGGACGGCACTGTACAGGA   1181
                     |||||..||||.|||||.|||||   ||..||.||||||.|..|.|||||
RBAM_003590__   1135 AACGGGCTGGGGGAATTCGATAAAATAGAAGAAGACGGCTCAATTCAGGA   1184

BSNT_00608___   1182 TGATTATCGAATTGATTATTTACGTTCGCATCTTGAGCAATGCAGACAAG   1231
                     |||.||..|||||||.||||||||.||.||||||||.||.||||||.|.|
RBAM_003590__   1185 TGACTACAGAATTGACTATTTACGCTCCCATCTTGAACAGTGCAGAGAGG   1234

BSNT_00608___   1232 CCATCAGTGACGGTGTTGATTTAATCGGCTATTGCAGCTGGTCGTTTACT   1281
                     ||||.||||||||.|||.||.|.||||||||.|||||||||||.||.||.
RBAM_003590__   1235 CCATTAGTGACGGAGTTCATCTCATCGGCTACTGCAGCTGGTCATTCACG   1284

BSNT_00608___   1282 GATCTGTTAAGCTGGCTGAACGGCTACCAAAAAAGATACGGATTTGTATA   1331
                     ||||||||||||||||||||||||||.||||||.|.|||||.|||||.||
RBAM_003590__   1285 GATCTGTTAAGCTGGCTGAACGGCTATCAAAAACGCTACGGTTTTGTCTA   1334

BSNT_00608___   1332 TGTCAATCGTGATGAAGAA-AGCACATACGATTTAAAACGCTTGAAGAAA   1380
                     |.|||||||.||||||||| |..| |.|.|||||||||||..|.|.||||
RBAM_003590__   1335 TATCAATCGAGATGAAGAAGATGA-AAAGGATTTAAAACGGATCAGGAAA   1383

BSNT_00608___   1381 AAAAGCTTTTATTGGTATCAAGATGTCATCAAGACGAACGGAGAAAGTTT   1430
                     |||||.|||||||||||.||..||||.||..|.||.|||||..|||||||
RBAM_003590__   1384 AAAAGTTTTTATTGGTACCAGAATGTAATTGAAACAAACGGTAAAAGTTT   1433

BSNT_00608___   1431 ATAA   1434
                     ||||
RBAM_003590__   1434 ATAA   1437


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