Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00570 and RBAM_003460
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:19
# Commandline: needle
# -asequence dna-align/BSNT_00570___ycgO.1.9828.seq
# -bsequence dna-align/RBAM_003460___ycgO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00570___ycgO-RBAM_003460___ycgO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00570___ycgO-RBAM_003460___ycgO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00570___ycgO
# 2: RBAM_003460___ycgO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1366
# Identity: 1068/1366 (78.2%)
# Similarity: 1068/1366 (78.2%)
# Gaps: 74/1366 ( 5.4%)
# Score: 4323.5
#
#
#=======================================
BSNT_00570___ 1 TTGGGTCCGGCAGTAACCGCTCTCAGTGCCGGCGCTGCCGATATGAGCGG 50
||||||||
RBAM_003460__ 1 ------------------------------------------ATGAGCGG 8
BSNT_00570___ 51 CTGGCTGCTGATGGGGCTTCCGGGCGCCATGTTTTCTACTGGTCTGAGCG 100
.|||||..||||||||||||||||.||.|||||.||.||.||..|.||||
RBAM_003460__ 9 ATGGCTCTTGATGGGGCTTCCGGGTGCTATGTTCTCGACAGGATTAAGCG 58
BSNT_00570___ 101 GCGCTTGGATCGTCATCGGACTT-TGCCTTGGAGCGTGGGCGAACTGGCT 149
||||||||||.||..||||.||| || ||.||.|||||||||||||||||
RBAM_003460__ 59 GCGCTTGGATTGTGCTCGGGCTTGTG-CTCGGGGCGTGGGCGAACTGGCT 107
BSNT_00570___ 150 TTACGTCGCACCGCGGCTGAGAACCTATACTGAAAAAGCGGGGAATTCCA 199
||.|||.||.|||.|.||||||||.|||||.|||||||||||||||||||
RBAM_003460__ 108 TTTCGTGGCGCCGAGACTGAGAACGTATACCGAAAAAGCGGGGAATTCCA 157
BSNT_00570___ 200 TTACAATTCCCGGATTCCTGGAAAATCGCTTCGGAGATCAAACAAAGCTT 249
|.||.|||||.||.|||||.|||||.||.|||||.|||||.||.||||||
RBAM_003460__ 158 TCACCATTCCGGGTTTCCTTGAAAACCGTTTCGGTGATCATACGAAGCTT 207
BSNT_00570___ 250 CTCAGACTGTTTTCAGGAATTGTCATTTTAGTCTTTTTCACGTTTTATGT 299
||||||||||||||.||..||||.|||.|.|||||||||||.|||||.||
RBAM_003460__ 208 CTCAGACTGTTTTCGGGTCTTGTTATTCTCGTCTTTTTCACATTTTACGT 257
BSNT_00570___ 300 ATCGTCCGGAATGGTGTCCGGCGGCGTCTTATTCAACAGCATCTTGGGGA 349
|||.|||||.|||||.|||||.||.|||||||||||||||||.||.|||.
RBAM_003460__ 258 ATCATCCGGCATGGTATCCGGAGGTGTCTTATTCAACAGCATTTTAGGGT 307
BSNT_00570___ 350 TGGATTATCACACCGGCCTGTGGATTGTGACGGGTGTTGTTGTGGCATAC 399
||.||||.|||||.||.||||||.|.|||||.||.||.|||||.||.|||
RBAM_003460__ 308 TGAATTACCACACGGGACTGTGGGTCGTGACAGGCGTCGTTGTCGCCTAC 357
BSNT_00570___ 400 ACCCTGTTTGGCGGCTTTTTGGCAGTCAGCTGGACAGATTTTGTTCAGGG 449
|||.||||.||.|||||||||||.||.||||||||.||.||||||||.||
RBAM_003460__ 358 ACCTTGTTCGGGGGCTTTTTGGCGGTAAGCTGGACGGACTTTGTTCAAGG 407
BSNT_00570___ 450 GATCATTATGTTTGCCGCACTCATTCTTGTGCCGATCGTTACGTTTTTCC 499
|||||||||||||||.||.||.||||||||||||||.||.|||.||||||
RBAM_003460__ 408 GATCATTATGTTTGCGGCGCTTATTCTTGTGCCGATTGTGACGATTTTCC 457
BSNT_00570___ 500 ACACGGGAGGAGCAGGTGATACAGTTGCTGAAATTCGCTCTGTAGATCCT 549
|.|||||.||..|.||.||.||.|||||.||.||.||.||.||..|.||.
RBAM_003460__ 458 ATACGGGCGGCCCGGGGGAAACCGTTGCCGATATCCGTTCCGTCAACCCG 507
BSNT_00570___ 550 GATATGTTTAACATTTTCAAAGGAACGAGCGTCCTTGGCATTATTTCTTT 599
||..||||||||||.||||||||.||||.|||||||||||||||||||||
RBAM_003460__ 508 GAACTGTTTAACATGTTCAAAGGGACGACCGTCCTTGGCATTATTTCTTT 557
BSNT_00570___ 600 GTTTGCCTGGGGGCTGGGATACTTTGGCCAGCCGCATATTATTGTGCGTT 649
.|||||.||||||||.||.||.||.||.||||||||||||||||||||.|
RBAM_003460__ 558 ATTTGCGTGGGGGCTCGGCTATTTCGGGCAGCCGCATATTATTGTGCGCT 607
BSNT_00570___ 650 TTATGGCGATCACGTCTGTCAAAGAGATCAAAAGAGCGCG-CAGA---AT 695
|||||||||||||.|||||.|||||.|||||| |||| |||| ||
RBAM_003460__ 608 TTATGGCGATCACATCTGTGAAAGAAATCAAA----CGCGCCAGACGGAT 653
BSNT_00570___ 696 CGGGATGGGCTGGATGATTTTGTCTGCAGTAGGCGCAGTGCTGACCGGT- 744
|||.|||||.||||||||||||||||||.|||||||..||.|.||.|||
RBAM_003460__ 654 CGGAATGGGATGGATGATTTTGTCTGCACTAGGCGCGCTGTTTACGGGTC 703
BSNT_00570___ 745 TTGGGCGGAATCGCTTATTACCATCAGCGCGGCATGACACTGAAG----- 789
|||.| ||||||||.||||||||.||||.||| |||||||
RBAM_003460__ 704 TTGCG-GGAATCGCGTATTACCACCAGCACGG------ACTGAAGCTGGC 746
BSNT_00570___ 790 -GACCCAGAGACGATTTTTATTCAATTAGGGAATATCTTGTTCCATCCGA 838
||.||.||.||.|||||||||||..|.||.||.||..|||||||.||||
RBAM_003460__ 747 TGATCCGGAAACCATTTTTATTCAGCTCGGCAACATTCTGTTCCACCCGA 796
BSNT_00570___ 839 TTATCACGGGTTTTCTGATTTCAGCGATTTTGGCCGCGATTATGAGTACA 888
||||.|||||.|||||.|||||.||||||||.||.||.|||||||||||.
RBAM_003460__ 797 TTATTACGGGATTTCTCATTTCTGCGATTTTAGCGGCCATTATGAGTACG 846
BSNT_00570___ 889 ATTTCTTCCCAGCTGCTTGTGACATCAAGCTCTCTGGTAGAAGATTTGTA 938
|||||.||.||||||||.||.||.||.||.|||.|.|||||.||||||||
RBAM_003460__ 847 ATTTCGTCTCAGCTGCTCGTTACGTCCAGTTCTTTAGTAGAGGATTTGTA 896
BSNT_00570___ 939 TAAGTCGATGTTCAGACGCTCAGCTTCAGATAAAGAACTGGTGTTTTTAG 988
||||||.||||||||.||.||.|||||.|||||.|||||.||.|||.|.|
RBAM_003460__ 897 TAAGTCCATGTTCAGGCGTTCGGCTTCTGATAAGGAACTCGTATTTCTGG 946
BSNT_00570___ 989 GCCGACTGGCTGTTCTGGCTGTTTCAATTGTCGCGTTGGTTATGGCTTGG 1038
|..||.||||.||.||.||.||.|||||..||||.|||||..|.||.|||
RBAM_003460__ 947 GGAGAATGGCAGTGCTTGCGGTGTCAATCATCGCTTTGGTGCTCGCCTGG 996
BSNT_00570___ 1039 GAGAAAAATAACACCATCCTTGGATTGGTCAGCTACGCGTGGGCGGGCTT 1088
||||||||.|||||.||.|||||..|.||||||||.||.||||||||.||
RBAM_003460__ 997 GAGAAAAACAACACGATACTTGGTCTTGTCAGCTATGCATGGGCGGGATT 1046
BSNT_00570___ 1089 CGGTGCATCATTCGGGCCGGTTGTACTGCTCAGTCTGTTTTGGAAACGAA 1138
|||.||.||||||||||||||.||||||||||||.|.|||||||||||.|
RBAM_003460__ 1047 CGGCGCTTCATTCGGGCCGGTCGTACTGCTCAGTTTATTTTGGAAACGGA 1096
BSNT_00570___ 1139 TGACCAAATGGGGGGCACTCGCCGGCATGATTGTGGGAGCAGCGACTGTA 1188
||||.||||||||||||||||||||||||||||.||||||....||.|||
RBAM_003460__ 1097 TGACGAAATGGGGGGCACTCGCCGGCATGATTGCGGGAGCGATTACCGTA 1146
BSNT_00570___ 1189 ATCATTTGGGCGAATGCCGGTCTTTCGGACTTTCTGTATGAAATGATACC 1238
||||||||||||||||||||||||||.||||||.||||.|||||.||.||
RBAM_003460__ 1147 ATCATTTGGGCGAATGCCGGTCTTTCAGACTTTTTGTACGAAATCATTCC 1196
BSNT_00570___ 1239 TGGTTTTGCTGCGAGTCTATTAT----CTGTCTTTTTTGTCAGCATATTG 1284
.||.|||||||..||.|| | ||||.|||.|.||||||.|||||
RBAM_003460__ 1197 GGGCTTTGCTGTAAGCCT----TGCCGCTGTATTTGTCGTCAGCTTATTG 1242
BSNT_00570___ 1285 ACGCAGGCTCCGTCACAAGCTGTCACAGACCAGTTCAACGACTACCAAGA 1334
||.||||||||||||.|||.|||||||||.|||||..|.||.||||..||
RBAM_003460__ 1243 ACACAGGCTCCGTCAAAAGATGTCACAGATCAGTTTCATGAGTACCGTGA 1292
BSNT_00570___ 1335 TACAATGTCACAATAA 1350
||||.|.||.||||||
RBAM_003460__ 1293 TACACTTTCTCAATAA 1308
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