Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00569 and RBAM_003450
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:18
# Commandline: needle
# -asequence dna-align/BSNT_00569___ycgN.1.9828.seq
# -bsequence dna-align/RBAM_003450___ycgN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00569___ycgN-RBAM_003450___ycgN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00569___ycgN-RBAM_003450___ycgN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00569___ycgN
# 2: RBAM_003450___ycgN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1548
# Identity: 1392/1548 (89.9%)
# Similarity: 1392/1548 (89.9%)
# Gaps: 0/1548 ( 0.0%)
# Score: 6336.0
#
#
#=======================================
BSNT_00569___ 1 ATGACAACACCTTACAAACACGAGCCATTCACAAATTTCCAAGATCAAAA 50
|||||.||||||||.||||||||.||||||||.|||||||||||||||..
RBAM_003450__ 1 ATGACTACACCTTATAAACACGAACCATTCACGAATTTCCAAGATCAATC 50
BSNT_00569___ 51 CAACGTGGAAGCGTTTAAAAAAGCGCTTGCGACAGTAAGCGAATATTTAG 100
.|||||.||||..|||||.||||||||||||||.||||..||.|||.|.|
RBAM_003450__ 51 GAACGTTGAAGAATTTAAGAAAGCGCTTGCGACGGTAAATGAGTATCTGG 100
BSNT_00569___ 101 GAAAAGACTATCCGCTTGTCATTAACGGCGAGAGAGTGGAAACGGAAGCG 150
|||||||.||||||||.|||||.|||||.||.|..||.||.||.|||||.
RBAM_003450__ 101 GAAAAGATTATCCGCTCGTCATCAACGGTGAAAAGGTAGAGACCGAAGCA 150
BSNT_00569___ 151 AAAATCGTTTCAATCAACCCGGCTGATAAAGAAGAAGTCGTCGGCCGAGT 200
||||||||.||.||.|||||.||.||.|||||||||||||||||...|||
RBAM_003450__ 151 AAAATCGTATCCATTAACCCTGCGGACAAAGAAGAAGTCGTCGGAAAAGT 200
BSNT_00569___ 201 GTCAAAAGCGTCTCAAGAGCACGCTGAGCAAGCGATTCAAGCGGCTGCAA 250
||||||.|||||.||.|||||||||||||||||||||.||||.|||||.|
RBAM_003450__ 201 GTCAAAGGCGTCCCAGGAGCACGCTGAGCAAGCGATTGAAGCTGCTGCGA 250
BSNT_00569___ 251 AAGCATTTGAAGAGTGGAGATACACGTCTCCTGAAGAGAGAGCGGCTGTC 300
||||.||.|||||||||||||||||.||.||||||||.||||||||.||.
RBAM_003450__ 251 AAGCGTTCGAAGAGTGGAGATACACATCCCCTGAAGAAAGAGCGGCCGTT 300
BSNT_00569___ 301 CTGTTCCGCGCTGCTGCCAAAGTCCGCAGAAGAAAACATGAATTCTCAGC 350
.||||||||||.|||||||||||||||.|.|||||.||.||||||||.||
RBAM_003450__ 301 TTGTTCCGCGCAGCTGCCAAAGTCCGCCGCAGAAAGCACGAATTCTCCGC 350
BSNT_00569___ 351 TTTGCTTGTGAAAGAAGCAGGAAAGCCTTGGAACGAGGCGGATGCCGATA 400
..||||.||.||.|||||.|||||.|||||||||||.||.|||||.||||
RBAM_003450__ 351 CCTGCTCGTCAAGGAAGCGGGAAAACCTTGGAACGAAGCTGATGCGGATA 400
BSNT_00569___ 401 CGGCTGAAGCGATTGACTTCATGGAGTATTATGCACGTCAAATGATCGAA 450
|||||||||||||||||||||||||||||||||||||.||||||||||||
RBAM_003450__ 401 CGGCTGAAGCGATTGACTTCATGGAGTATTATGCACGCCAAATGATCGAA 450
BSNT_00569___ 451 CTGGCAAAAGGCAAACCGGTCAACAGCCGTGAAGGCGAGAAAAACCAATA 500
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_003450__ 451 CTGGCAAAAGGCAAACCGGTCAACAGCCGTGAAGGCGAGAAAAACCAATA 500
BSNT_00569___ 501 TGTATACACGCCGACTGGAGTGACAGTCGTTATCCCGCCTTGGAACTTCT 550
|||||||||||||||||||||||||||.|||||.|||||.||||||||||
RBAM_003450__ 501 TGTATACACGCCGACTGGAGTGACAGTTGTTATTCCGCCGTGGAACTTCT 550
BSNT_00569___ 551 TGTTTGCGATCATGGCAGGCACAACAGTGGCGCCGATCATTACTGGAAAC 600
|||||||||||||||||||.||||||||||||||||||.|||||||||||
RBAM_003450__ 551 TGTTTGCGATCATGGCAGGAACAACAGTGGCGCCGATCGTTACTGGAAAC 600
BSNT_00569___ 601 ACAGTGGTTCTGAAACCTGCGAGTGCTACACCTGTTATTGCAGCAAAATT 650
|||||||||||.||||||||||||||||||||||||||||||||||||||
RBAM_003450__ 601 ACAGTGGTTCTAAAACCTGCGAGTGCTACACCTGTTATTGCAGCAAAATT 650
BSNT_00569___ 651 TGTTGAGGTGCTTGAAGAGTCCGGATTGCCAAAAGGCGTAGTCAACTTTG 700
||||||.|||||||||||||||||||||||||||||||||||||||||||
RBAM_003450__ 651 TGTTGAAGTGCTTGAAGAGTCCGGATTGCCAAAAGGCGTAGTCAACTTTG 700
BSNT_00569___ 701 TTCCGGGAAGCGGAGCGGAAGTAGGCGACTATCTTGTTGACCATCCGAAA 750
||||.|||||||||||.|||||||||||.|||||||||||||||||||||
RBAM_003450__ 701 TTCCTGGAAGCGGAGCAGAAGTAGGCGATTATCTTGTTGACCATCCGAAA 750
BSNT_00569___ 751 ACAAGCCTTATCACATTTACGGGATCAAGAGAAGTTGGTACGAGAATTTT 800
||||||||||||||||||||.||||||.|.|||||.||||||||||||||
RBAM_003450__ 751 ACAAGCCTTATCACATTTACAGGATCACGTGAAGTCGGTACGAGAATTTT 800
BSNT_00569___ 801 CGAACGCGCGGCGAAGGTTCAGCCAGGCCAGCAGCACTTTAAGCGTGTCA 850
|||||||||||||||.||.|||||.|||||||||||..|.||.||.||||
RBAM_003450__ 801 CGAACGCGCGGCGAAAGTGCAGCCGGGCCAGCAGCATCTGAAACGCGTCA 850
BSNT_00569___ 851 TCGCTGAAATGGGCGGTAAAGATACGGTTGTTGTCGATGAGGATGCGGAC 900
|.||.||||||||||||||||||||||||||.||.||.||.|||||||||
RBAM_003450__ 851 TTGCAGAAATGGGCGGTAAAGATACGGTTGTCGTTGACGAAGATGCGGAC 900
BSNT_00569___ 901 ATTGAATTAGCGGCTCAATCGATCTTTACTTCAGCATTCGGCTTTGCGGG 950
||||||||.|||||||||||.||||||||.||||||||||||||.|||||
RBAM_003450__ 901 ATTGAATTGGCGGCTCAATCCATCTTTACATCAGCATTCGGCTTCGCGGG 950
BSNT_00569___ 951 ACAAAAATGCTCTGCAGGTTCACGTGCAGTAGTTCATGAAAAAGTGTATG 1000
|||||||||.||||||||||||||||||||.||.||||||||||||||||
RBAM_003450__ 951 ACAAAAATGTTCTGCAGGTTCACGTGCAGTTGTCCATGAAAAAGTGTATG 1000
BSNT_00569___ 1001 ATCAAGTATTAGAGCGTGTCATTGAAATTACGGAATCAAAAGTAACAGCT 1050
||||||||||||||||||||||||||||||||||||||||||||||.|||
RBAM_003450__ 1001 ATCAAGTATTAGAGCGTGTCATTGAAATTACGGAATCAAAAGTAACTGCT 1050
BSNT_00569___ 1051 AAACCTGACAGTGCAGATGTTTATATGGGACCTGTCATTGACCAAGGTTC 1100
|||||||||||||||||||||||||||||.||||||||||||||||||||
RBAM_003450__ 1051 AAACCTGACAGTGCAGATGTTTATATGGGGCCTGTCATTGACCAAGGTTC 1100
BSNT_00569___ 1101 TTATGATAAAATTATGAGCTATATTGAGATCGGAAAACAGGAAGGGCGTT 1150
|||.||.||.||.||||||||.|||||.|||||||||.|.|||||.||||
RBAM_003450__ 1101 TTACGACAAGATCATGAGCTACATTGAAATCGGAAAAGAAGAAGGCCGTT 1150
BSNT_00569___ 1151 TAGTAAGCGGCGGTACCGGTGATGATTCGAAAGGATACTTCATCAAACCG 1200
|||||||||||||.|||||.||||||||.|||||.|||||.|||||.|||
RBAM_003450__ 1151 TAGTAAGCGGCGGCACCGGAGATGATTCAAAAGGCTACTTTATCAAGCCG 1200
BSNT_00569___ 1201 ACGATCTTCGCTGACCTTGATCCGAAAGCAAGACTCATGCAGGAAGAAAT 1250
|||||||||||||||||||||||||||||.||||||||||||||||||||
RBAM_003450__ 1201 ACGATCTTCGCTGACCTTGATCCGAAAGCCAGACTCATGCAGGAAGAAAT 1250
BSNT_00569___ 1251 TTTCGGACCTGTCGTTGCATTTTGTAAAGTGTCAGACTTTGATGAAGCTT 1300
||||||.||||||||.||.||||.||||||||||.|||||||||||||||
RBAM_003450__ 1251 TTTCGGGCCTGTCGTGGCGTTTTCTAAAGTGTCAAACTTTGATGAAGCTT 1300
BSNT_00569___ 1301 TAGAAGTGGCAAACAATACTGAATATGGTTTGACAGGCGCGGTTATCACA 1350
||||||||||.||||||||||||||.|||||||||||||||||.||.|||
RBAM_003450__ 1301 TAGAAGTGGCCAACAATACTGAATACGGTTTGACAGGCGCGGTCATTACA 1350
BSNT_00569___ 1351 AACAACCGCAAGCACATCGAGCGTGCGAAACAGGAATTCCATGTCGGAAA 1400
||.||||||||.||.||.||.||.|||||||||||||||||||||||.||
RBAM_003450__ 1351 AATAACCGCAAACATATTGAACGGGCGAAACAGGAATTCCATGTCGGCAA 1400
BSNT_00569___ 1401 CCTATACTTCAACCGCAACTGTACAGGTGCTATCGTCGGCTACCATCCGT 1450
|||.||||||||||||||.|||||.||.||.||.||||||||||||||||
RBAM_003450__ 1401 CCTGTACTTCAACCGCAATTGTACGGGAGCGATTGTCGGCTACCATCCGT 1450
BSNT_00569___ 1451 TTGGCGGCTTCAAAATGTCGGGAACGGATTCAAAAGCAGGCGGGCCGGAT 1500
|.||.||||||||||||||.||.||.|||||||||||.|||||.||||||
RBAM_003450__ 1451 TCGGAGGCTTCAAAATGTCCGGCACTGATTCAAAAGCGGGCGGCCCGGAT 1500
BSNT_00569___ 1501 TACTTGGCTCTGCATATGCAGGCAAAAACAATCAGTGAAATGTTCTAA 1548
||.|||||.||.||.||||||||.||||||||||||||||||||.|||
RBAM_003450__ 1501 TATTTGGCCCTCCACATGCAGGCGAAAACAATCAGTGAAATGTTTTAA 1548
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