Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00545 and RBAM_003330

See Amino acid alignment / Visit BSNT_00545 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:17
# Commandline: needle
#    -asequence dna-align/BSNT_00545___ycgG.1.9828.seq
#    -bsequence dna-align/RBAM_003330___yqcI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00545___ycgG-RBAM_003330___yqcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00545___ycgG-RBAM_003330___yqcI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00545___ycgG
# 2: RBAM_003330___yqcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 787
# Identity:     579/787 (73.6%)
# Similarity:   579/787 (73.6%)
# Gaps:          38/787 ( 4.8%)
# Score: 2145.5
# 
#
#=======================================

BSNT_00545___      1 TTGAGGTGGATCAATGGTGAATGGGATTTACACCAAAAGTTTTCTGGAAC     50
                                  ||||..|..|.|.|.|||||.|||||||         
RBAM_003330__      1 -------------ATGGCAAGCGAGCTGTACACAAAAAGTT---------     28

BSNT_00545___     51 GTATTCAGGA----------GAGCTTCCTGAATGGCAAAGAATCGCTTTT     90
                     |..||.||||          ||.||.||..|.|||||.|||.||||||||
RBAM_003330__     29 GCCTTGAGGAAAAGTTGTTGGATCTGCCAAATTGGCAGAGAGTCGCTTTT     78

BSNT_00545___     91 GAGCTGCTGGCAGAAACTCTGGGGGACGACGCGGATACGTTTCCGTGCAT    140
                     |||||.||..|||||||..|.||.||..|.||||||||||||||||||||
RBAM_003330__     79 GAGCTTCTATCAGAAACAATAGGTGATAAAGCGGATACGTTTCCGTGCAT    128

BSNT_00545___    141 TCCCGGACGCCAGGCGTTTCTGACTGATCAGCTTCGGATTGCTTTTGCCG    190
                     |||.|||||.||||..|||.||||.||||||||.|||||..|.|||||.|
RBAM_003330__    129 TCCGGGACGTCAGGGATTTTTGACAGATCAGCTCCGGATATCCTTTGCGG    178

BSNT_00545___    191 GAGATCCGCGGGAAAACCGCACAGCGGAGGAACTGGCTCCGTTGCTTGCG    240
                     |.|||||.||.|||.|..|.||..||||||||.|||....|.||||..|.
RBAM_003330__    179 GTGATCCTCGCGAAGAGGGAACCCCGGAGGAAGTGGGGATGCTGCTGTCC    228

BSNT_00545___    241 GAGTACGGCAAGATATCGCGGGACACGGGAAAATACGCATCCCTCGTTGT    290
                     ||||||||.|||||.||..||.|.||.||||.||||||.||.||..||||
RBAM_003330__    229 GAGTACGGAAAGATCTCAAGGAATACCGGAAGATACGCGTCGCTGCTTGT    278

BSNT_00545___    291 GTTGTTTGATACACCGGAAGATTTGGCGGAGCATTATTCGATTGAAGCGT    340
                     |.|.||||||||.||.||.|||||.||.|||||||||||..||||.||||
RBAM_003330__    279 GATTTTTGATACGCCTGAGGATTTAGCTGAGCATTATTCCGTTGAGGCGT    328

BSNT_00545___    341 ATGAAGAGCTGTTTTGGCGCTTTTTAAATAGACTGA--GTCATCAAGACG    388
                     |||||||||||||.|||...||||||||..|.||||  |.|..|  |||.
RBAM_003330__    329 ATGAAGAGCTGTTCTGGTCTTTTTTAAACCGGCTGAGCGGCTGC--GACC    376

BSNT_00545___    389 AAAAAGAATGGCCGGAAGACATTCCGGCCGATCCCGAGCATTATAAATGG    438
                     ..|||||.||||||||||||||.||||..||.||.||.||||||||||||
RBAM_003330__    377 CGAAAGACTGGCCGGAAGACATGCCGGAAGACCCTGAACATTATAAATGG    426

BSNT_00545___    439 GAGTTTTGTTTTGACGGCGAGCCGTACTTTCTTCTCTGCGCTACACCGGC    488
                     |||||.||.|||||||||||||||||.|||.||||.|||||.||.||.||
RBAM_003330__    427 GAGTTCTGCTTTGACGGCGAGCCGTATTTTATTCTGTGCGCGACGCCTGC    476

BSNT_00545___    489 GCACGAGGCGAGAAAAAGCCGAAGCTTTCCTTTTTTTATGATCACGTTTC    538
                     |||.||.||||||.|||||.|||||||.||.|||||||||.|..||||||
RBAM_003330__    477 GCATGAAGCGAGACAAAGCAGAAGCTTCCCGTTTTTTATGCTGGCGTTTC    526

BSNT_00545___    539 AGCCAAGGTGGGTGTTTG-AGGACCTAAATGGATCAACTGCATTTGGCCG    587
                     ||||.||.|||||.||.| |||| .||||.|..|||||.||.||.||.||
RBAM_003330__    527 AGCCGAGATGGGTTTTCGAAGGA-TTAAACGATTCAACCGCGTTCGGACG    575

BSNT_00545___    588 TAACATGAGCAGGCTGATCCGATCTCGTTTAGAGGCCTATGATCAGGCTC    637
                     .|||||||||.||||||||.||...|||||||||||.|||||..|.||.|
RBAM_003330__    576 AAACATGAGCCGGCTGATCAGAAAACGTTTAGAGGCATATGACGAAGCCC    625

BSNT_00545___    638 CGATTCACCCGCAATTAGGCTGGTACGGAGGAAAAGATAATCGTGAATGG    687
                     |..||||.||.|.|||.||.|||||||||||||||||.|||...||||||
RBAM_003330__    626 CTCTTCATCCCCGATTGGGGTGGTACGGAGGAAAAGACAATTTAGAATGG    675

BSNT_00545___    688 AAGCAGTATTTCCTCCGTGATGACGAAAAACAGGTATCGAAGTGCCCGTT    737
                     |||||.|||||||||||||||||.||.|...|.||.||.|||||.||.||
RBAM_003330__    676 AAGCAATATTTCCTCCGTGATGATGAGACGGAAGTGTCAAAGTGTCCCTT    725

BSNT_00545___    738 TTCTTATTTAAAGAACATGTTCAACAAAATGAAATAA    774
                     ||||||||||||||...||||.||....|.|||||||
RBAM_003330__    726 TTCTTATTTAAAGAGGCTGTTTAAACCGACGAAATAA    762


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