Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00538 and RBAM_003280
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:17
# Commandline: needle
# -asequence dna-align/BSNT_00538.1.9828.seq
# -bsequence dna-align/RBAM_003280___amyE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00538-RBAM_003280___amyE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00538-RBAM_003280___amyE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00538
# 2: RBAM_003280___amyE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1983
# Identity: 1261/1983 (63.6%)
# Similarity: 1261/1983 (63.6%)
# Gaps: 552/1983 (27.8%)
# Score: 5558.5
#
#
#=======================================
BSNT_00538 1 ATGTTTGCAAAACGATTCAAAACCTCTTTACTGCCGTTATTCGCTGGATT 50
|||||||.||||||||||||||||||||||||||||||||||||.|||||
RBAM_003280__ 1 ATGTTTGAAAAACGATTCAAAACCTCTTTACTGCCGTTATTCGCCGGATT 50
BSNT_00538 51 TTTATTGCTGTTTTATTTGGTTCTGGCAGGACCGGCGGCTGCGAGTGCTG 100
|||||||||||||.||||||||.||.||||.|||||||||||.|..||||
RBAM_003280__ 51 TTTATTGCTGTTTCATTTGGTTTTGTCAGGCCCGGCGGCTGCAAACGCTG 100
BSNT_00538 101 AAACGGCGAACAAATCGAATGAGCTTACAGCACCGTCGATCAAAAGCGGA 150
||||.||.||||||||||||.||.|.||.||..|.|||.||||||.|||.
RBAM_003280__ 101 AAACTGCAAACAAATCGAATAAGGTGACCGCGTCATCGGTCAAAAACGGG 150
BSNT_00538 151 ACCATTCTTCATGCATGGAATTGGTCGTTCAATACGTTAAAACACAATAT 200
|||||.||||||||||||||||||||||||||||||||||.|||.|||||
RBAM_003280__ 151 ACCATCCTTCATGCATGGAATTGGTCGTTCAATACGTTAACACAAAATAT 200
BSNT_00538 201 GAAGGATATTCATGATGCAGGATATACAGCCATTCAGACATCTCCGATTA 250
|||.|||||||.||||||.||.|||.|||||||||||||.||||||||||
RBAM_003280__ 201 GAAAGATATTCGTGATGCGGGCTATGCAGCCATTCAGACGTCTCCGATTA 250
BSNT_00538 251 ACCAAGTAAAGGAAGGGAATCAAGGAGATAAAAGCATGTCGAACTGGTAC 300
|||||||||||||||||||.||||||||||||||||||..||||||||||
RBAM_003280__ 251 ACCAAGTAAAGGAAGGGAACCAAGGAGATAAAAGCATGAGGAACTGGTAC 300
BSNT_00538 301 TGGCTGTATCAGCCGACATCGTATCAAATTGGCAACCGTTACTTAGGTAC 350
|||||||||||||||||||||||.|||||.|||||||||||||||||.||
RBAM_003280__ 301 TGGCTGTATCAGCCGACATCGTACCAAATCGGCAACCGTTACTTAGGCAC 350
BSNT_00538 351 TGAACAAGAATTTAAAGAAATGTGTGCAGCCGCTGAAGAATATGGCATAA 400
|||||||||||||||.||.|||||||||||.||.|||.||||||||.|||
RBAM_003280__ 351 TGAACAAGAATTTAAGGACATGTGTGCAGCGGCGGAAAAATATGGCGTAA 400
BSNT_00538 401 AGGTCATTGTTGACGCGGTCATCAATCATACCACCAGTGATTATGCCGCG 450
|.||||||||.||.|||||.|||||||||||.|||||.|||||||.||||
RBAM_003280__ 401 AAGTCATTGTCGATGCGGTTATCAATCATACTACCAGCGATTATGGCGCG 450
BSNT_00538 451 ATTTCCAATGAGGTTAAGAGTATTCCAAACTGGACACATGGAAACACACA 500
|||||..|.|||.|||||.||||||||||||||||.||||||||||||||
RBAM_003280__ 451 ATTTCTGACGAGATTAAGCGTATTCCAAACTGGACCCATGGAAACACACA 500
BSNT_00538 501 AATTAAAAACTGGTCTGATCGATGGGATGTCACGCAGAATTCATTGCCCG 550
|||||||||.|||||.|||||||||||.|||||.||.||||||||||.||
RBAM_003280__ 501 AATTAAAAATTGGTCGGATCGATGGGACGTCACTCAAAATTCATTGCTCG 550
BSNT_00538 551 GGCTGTATGACTGGAATACACAAAATACACAAGTACAGTCCTATCTGAAA 600
||||||||||.|||||||||||.|||||..|.||.|||..||||||||||
RBAM_003280__ 551 GGCTGTATGATTGGAATACACAGAATACTGAGGTGCAGGTCTATCTGAAA 600
BSNT_00538 601 CGGTTCTTAGAAAGGGCATTGAATGACGGGGCAGACGGTTTTCGATTTGA 650
||.|||||.|||||.||||||||||||||.||||||||.||.||.|.|||
RBAM_003280__ 601 CGTTTCTTGGAAAGAGCATTGAATGACGGAGCAGACGGGTTCCGCTATGA 650
BSNT_00538 651 TGCCGCCAAACATATAGAGCTTCCGGATGATGGGAGTTACGGCAGTCAAT 700
|||||||||.||||||||||||||||||||.||||.|||||||||.||||
RBAM_003280__ 651 TGCCGCCAAGCATATAGAGCTTCCGGATGACGGGAATTACGGCAGCCAAT 700
BSNT_00538 701 TTTGGCCGAATATCACAAATACATCTGCAGAGTTCCAATACGGAGAAATC 750
|||||||||||||||||||||||||.||.|||||||||||||||||||||
RBAM_003280__ 701 TTTGGCCGAATATCACAAATACATCAGCGGAGTTCCAATACGGAGAAATC 750
BSNT_00538 751 CTGCAGGATAGTGCCTCCAGAGATGCTGCATATGCGAATTATATGGATGT 800
|||||.||.||.||.|||||||||.||||.|||||||||||||||.||||
RBAM_003280__ 751 CTGCAAGACAGCGCGTCCAGAGATACTGCTTATGCGAATTATATGAATGT 800
BSNT_00538 801 GACAGCGTCTAACTATGGGCATTCCATAAGGTCCGCTTTAAAGAATCGTA 850
|||.||.||||||||.|||||||||||.||.||||||||||||||.||||
RBAM_003280__ 801 GACGGCTTCTAACTACGGGCATTCCATCAGATCCGCTTTAAAGAACCGTA 850
BSNT_00538 851 ATCTGGGCGTGTCGAATATCTCCCACTATGCATCTGATGTGTCTGCGGAC 900
|||||.|.|||||||||||||||||.|||||||||||.||||||||||||
RBAM_003280__ 851 ATCTGAGTGTGTCGAATATCTCCCATTATGCATCTGACGTGTCTGCGGAC 900
BSNT_00538 901 AAGCTGGTGACATGGGTGGAGTCGCATGATACGTATGCCAATGATGATGA 950
|||.|.||.|||||||||||.||.||||||||||||||||||||||||||
RBAM_003280__ 901 AAGTTAGTCACATGGGTGGAATCACATGATACGTATGCCAATGATGATGA 950
BSNT_00538 951 AGAGTCGACATGGATGAGCGATGATGATATCCGTTTAGGCTGGGCGGTGA 1000
||||||.|||||||||||.|||||.|||||.||||||||||||||.||||
RBAM_003280__ 951 AGAGTCCACATGGATGAGTGATGACGATATTCGTTTAGGCTGGGCAGTGA 1000
BSNT_00538 1001 TAGCTTCTCGTTCAGGCAGTACGCCTCTTTTCTTTTCCAGACCTGAGGGA 1050
|.|.|||.||.|||||.||.|||||||||||||||||||||||||||||.
RBAM_003280__ 1001 TTGGTTCCCGCTCAGGAAGCACGCCTCTTTTCTTTTCCAGACCTGAGGGC 1050
BSNT_00538 1051 GGCGGAAATGGTGTGAGATTCCCGGGGAAAAGCCAAATAGGCGATCGCGG 1100
||.|||||||||||.|||||.||.||.|||||.||||||||.||||||||
RBAM_003280__ 1051 GGAGGAAATGGTGTAAGATTTCCCGGAAAAAGTCAAATAGGAGATCGCGG 1100
BSNT_00538 1101 GAGTGCTTTATTTGAAGATCAGGCTATCACTGCGGTCAATAGATTTCACA 1150
|||.||.||||||.||||||||||.||||||||||||||||.||||||||
RBAM_003280__ 1101 GAGCGCCTTATTTAAAGATCAGGCGATCACTGCGGTCAATACATTTCACA 1150
BSNT_00538 1151 ATGTGATGGCTGGACAGCATGAGGAACTCTCGAACCCGAATGGAAACAAC 1200
||||.|||||.||.||||..||||||||||||||.||||||||.||||||
RBAM_003280__ 1151 ATGTAATGGCCGGGCAGCCCGAGGAACTCTCGAATCCGAATGGGAACAAC 1200
BSNT_00538 1201 CAGATATTTATGAATCAGCGCGGCTCACATGGCGTTGTGCTGGCAAATGC 1250
||..|.|||||||||||||||||||||.|.||||||||||||||||||||
RBAM_003280__ 1201 CAAGTCTTTATGAATCAGCGCGGCTCAAAAGGCGTTGTGCTGGCAAATGC 1250
BSNT_00538 1251 AGGTTCATCCTCTGTCTCTATCAATACGGCAACAAAATTGCCTGATGGCA 1300
.||.||.||.||||||.|.||||||||..||.|.|||||.|||||.||||
RBAM_003280__ 1251 GGGATCGTCTTCTGTCACCATCAATACTTCAGCGAAATTACCTGACGGCA 1300
BSNT_00538 1301 GGTATGACAATAAAGCTGGAGCGGGTTCATTTCAAGT---GAACGATGGT 1347
|||||||.||||..||.||.||.|||||||||||||| |||| ||.
RBAM_003280__ 1301 GGTATGATAATAGGGCCGGCGCCGGTTCATTTCAAGTAGCGAAC---GGC 1347
BSNT_00538 1348 AAACTGACAGGCACGATCAATGCCAGGTCTGTAGCTGTGCTTTATCCTGA 1397
|||||||||||.||||||||||||||.||.|..|||||.|||||||||||
RBAM_003280__ 1348 AAACTGACAGGTACGATCAATGCCAGATCCGCGGCTGTTCTTTATCCTGA 1397
BSNT_00538 1398 TGATATTGAAA-------TCAGGTGT----------------AAC----- 1419
||||||||.|| |||.||.| |||
RBAM_003280__ 1398 TGATATTGGAAATGCGCCTCATGTCTTTCTTGAGAATTACCAAACGGGGG 1447
BSNT_00538 1420 ----ACATTCTTTCAATGA------------------------------- 1434
.||||||||||||||
RBAM_003280__ 1448 CAGTCCATTCTTTCAATGATCAGCTGACGGTCACCCTGCGTGCAAATGCG 1497
BSNT_00538 1434 -------------------------------------------------- 1434
RBAM_003280__ 1498 AAAACAACAAAAGCCGTTTACCAAATCAATAATGGGCAGCAGACAGCATT 1547
BSNT_00538 1434 -------------------------------------------------- 1434
RBAM_003280__ 1548 TAAGGATGGAGACCGACTAACGATCGGGAAAGGAGATCCAATCGGCACGA 1597
BSNT_00538 1434 -------------------------------------------------- 1434
RBAM_003280__ 1598 CATACAACATCAAATTAACCGGAACGAACGGCGAGGGTGCAGCGAGAACC 1647
BSNT_00538 1434 -------------------------------------------------- 1434
RBAM_003280__ 1648 CAAGAATACACATTTGTCAAAAAAGACCCGTCCCAAACCAACATCATTGG 1697
BSNT_00538 1434 -------------------------------------------------- 1434
RBAM_003280__ 1698 CTATCAAAATCCGGACCATTGGGGCCAGGTAAATGCTTATATTTACAAAC 1747
BSNT_00538 1434 -------------------------------------------------- 1434
RBAM_003280__ 1748 ATGATGGAGGCAGGGCCATAGAATTAACCGGATCGTGGCCGGGGAAAGCA 1797
BSNT_00538 1434 -------------------------------------------------- 1434
RBAM_003280__ 1798 ATGACTAAGAATGCAAATGGAATGTACACGCTGACGCTGCCTGAGAATAC 1847
BSNT_00538 1434 -------------------------------------------------- 1434
RBAM_003280__ 1848 GGATACGGCCAATGCCAAAGTGATTTTTAACAATGGCAGCGCCCAAGTGC 1897
BSNT_00538 1434 -------------------------------------------------- 1434
RBAM_003280__ 1898 CCGGACAGAACCAGCCCGGCTTTGATTATGTGCAGAATGGTTTGTATAAC 1947
BSNT_00538 1434 --------------------------------- 1434
RBAM_003280__ 1948 AACTCCGGTTTGAATGGTTATCTTCCGCATTAA 1980
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