Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00531 and RBAM_003250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:17
# Commandline: needle
# -asequence dna-align/BSNT_00531___amhX.1.9828.seq
# -bsequence dna-align/RBAM_003250___amhX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00531___amhX-RBAM_003250___amhX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00531___amhX-RBAM_003250___amhX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00531___amhX
# 2: RBAM_003250___amhX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1180
# Identity: 860/1180 (72.9%)
# Similarity: 860/1180 (72.9%)
# Gaps: 86/1180 ( 7.3%)
# Score: 3252.5
#
#
#=======================================
BSNT_00531___ 1 ATGCAAAAG-CTTTCAGAAGACATGAAA--CAAACCATTATGGACATCTT 47
||| ||.|| | |||.|...||||||| |||..|||||||||.||.||
RBAM_003250__ 1 ATG-AACAGAC--TCACAGCGCATGAAAAGCAAGTCATTATGGATATTTT 47
BSNT_00531___ 48 CGAGCATCTGCACGCGAATCCTGAAGTCAGCTGGAAGGAATATGAGACAA 97
.||.||.||||||||.|||||.|||||.||||||||.||||||.|.||||
RBAM_003250__ 48 TGACCACCTGCACGCCAATCCCGAAGTAAGCTGGAAAGAATATCAAACAA 97
BSNT_00531___ 98 CTTCATTTTTGAAACAAAAGCTTGAGGATTTAGGGTGCCGGACGCGCACG 147
||..||.|.|||...||||.||..|.||....||.||||||||.||||||
RBAM_003250__ 98 CTGAATATCTGACTGAAAAACTGAAAGAGGCCGGCTGCCGGACCCGCACG 147
BSNT_00531___ 148 TTTTCAGACTGCACCGGGGTTGTCGGCGAAATCGGCTCAGGCTCACCTGT 197
|||...||.||.|||||.|||||||||||||||||...||||||.|||||
RBAM_003250__ 148 TTTGATGATTGTACCGGTGTTGTCGGCGAAATCGGAGAAGGCTCGCCTGT 197
BSNT_00531___ 198 TGTAGCGGTACGCGCTGATATTGACGCGCTGTGGCAGGAGGTTAACGGCA 247
|||.||.||.||.||.|||||||||||||||||||||||.||..||||..
RBAM_003250__ 198 TGTGGCTGTCCGGGCGGATATTGACGCGCTGTGGCAGGAAGTGGACGGTG 247
BSNT_00531___ 248 CATTTCGCGCCAACCATTCCTGCGGACACGATTCACATATGACAATGGCA 297
..||||..||.||||||||.||||||||.||||||||||||||.|||||.
RBAM_003250__ 248 TCTTTCAGGCGAACCATTCATGCGGACATGATTCACATATGACGATGGCG 297
BSNT_00531___ 298 TTGGGCACGTTAATGCTGCTAAAAAAACAACCTGAGCTTCCGAAGGGTAC 347
.|.||||||.|.|||||..||||.|..||.||..|.|||||||||||.||
RBAM_003250__ 298 CTCGGCACGATGATGCTTTTAAAGAGTCAGCCGAAACTTCCGAAGGGCAC 347
BSNT_00531___ 348 AATCCGTTTTATCTTTCAGCCGGCAGAAGAAAAAGGCGGCGGCGCCTTGA 397
.|||||.|||||.|||||||||||.|||||||||||||||||.||..|||
RBAM_003250__ 348 CATCCGCTTTATTTTTCAGCCGGCTGAAGAAAAAGGCGGCGGAGCGCTGA 397
BSNT_00531___ 398 AAATGATAGAAGAAGGCGTGCTTGATGATATCGACTATTTGTATGGCGTT 447
|||||||.|||.|||||||.||.||||||.|.||.|..||.||.|||||.
RBAM_003250__ 398 AAATGATTGAAAAAGGCGTACTGGATGATGTTGATTTCTTATACGGCGTG 447
BSNT_00531___ 448 CACGTCCGTCCGATCCAGGAAACACAAAACGGCCGCTGCGCTCCGTCTAT 497
|||||.||.||..|.||||||||...|||||||||.|||||.|||||.||
RBAM_003250__ 448 CACGTGCGCCCCGTACAGGAAACGGCAAACGGCCGATGCGCACCGTCCAT 497
BSNT_00531___ 498 TCTGCACGGATCAAGCCAGCACATTGAGGGAACGATCATCGGGGAAGAGA 547
||||||.||.|||||||||||.||.||.||...|||.|||||.|||||..
RBAM_003250__ 498 TCTGCATGGCTCAAGCCAGCATATAGAAGGCCTGATTATCGGAGAAGAAG 547
BSNT_00531___ 548 CTCATGGCGCCCGTCCGCACCTCGGGAAAAACAGCATTGAAATTGCGGCA 597
|.||.|||||..|.|||||.|||||....|||||.||.|||||.||.||.
RBAM_003250__ 548 CCCACGGCGCGAGACCGCATCTCGGCCTTAACAGTATCGAAATCGCCGCT 597
BSNT_00531___ 598 TTTCTTGTACATAAGCTCGGACTCATTCATATTGA--CCCGCAAATCCCG 645
.||||.||.||.||.|||.|..||||||||.|||| ||.|| ||||||
RBAM_003250__ 598 CTTCTCGTCCAAAAACTCAGCTTCATTCATCTTGATCCCGGC--ATCCCG 645
BSNT_00531___ 646 CATACCGTCAAAATGACAAAACTTCAAGCCGGCGGTGAAAGCTCTAACAT 695
|||.||||.||.||||||||.|||||.||.||||||||.||.||.||.||
RBAM_003250__ 646 CATTCCGTGAAGATGACAAAGCTTCAGGCAGGCGGTGAGAGTTCCAATAT 695
BSNT_00531___ 696 CATTCCAGGAAAAGCATCGTTCAGCCTTGATTTGCGCGCACAGACCAATG 745
||||||.||||||||||||||||||||||||.|.||||||||.|||||||
RBAM_003250__ 696 CATTCCGGGAAAAGCATCGTTCAGCCTTGATCTCCGCGCACAAACCAATG 745
BSNT_00531___ 746 AAGCCATGGAGGCGTTAATCGCCGAGACAGAAAGAGCCTGTGAAGCGGCC 795
..|||||||||...||||.||||||.||.||||||||||||||.|||||.
RBAM_003250__ 746 CCGCCATGGAGAAATTAACCGCCGAAACCGAAAGAGCCTGTGAGGCGGCG 795
BSNT_00531___ 796 GCCGCTGCATTCGGCGCAAAAATCGATCTGCAAAAAGAACACAGCCTTCC 845
||.||.||||||||||||||||||||.||||||||||||||||||||.||
RBAM_003250__ 796 GCTGCCGCATTCGGCGCAAAAATCGAACTGCAAAAAGAACACAGCCTCCC 845
BSNT_00531___ 846 TGCGGCAACACAAAACAAAGAAGCTGAAGCGATCATGGCAGAAGCCATTA 895
.||.||....|.|||||||||.||.|||||.|||||||
RBAM_003250__ 846 GGCAGCCGAGCGAAACAAAGAGGCGGAAGCCATCATGG------------ 883
BSNT_00531___ 896 CAGATATCATCGGGGCTGAGCGGC-------------------TTGATGA 926
||||.|.|.|.|||||| |.|||||
RBAM_003250__ 884 -------CATCTGCGATAAGCGGCATTCTCGGAGAAGAATATGTGGATGA 926
BSNT_00531___ 927 CCCGCTTGTCACTACCGGCGGAGAGGATTTCCATTTTTACGCCGTGAAGG 976
.||.|||||.||.|||||.|||||||||||.||.|||||||...|.||||
RBAM_003250__ 927 ACCTCTTGTGACAACCGGAGGAGAGGATTTTCACTTTTACGGGTTAAAGG 976
BSNT_00531___ 977 TGCCGAATCTGAAAACAACGATGCTCGGACTAGGCTGCGGGCTCCAGCCG 1026
|||||||..|.|||||.|||||||||||.|||||.|||||.||..|||||
RBAM_003250__ 977 TGCCGAACTTAAAAACGACGATGCTCGGCCTAGGATGCGGTCTGGAGCCG 1026
BSNT_00531___ 1027 GGACTCCATCATCCGCACATGACATTTGACAGAAATGCGATGTTCAACGG 1076
||.||.||.|||||.||.||||||||||||.|||..||.||.||.|..||
RBAM_003250__ 1027 GGGCTTCACCATCCCCAAATGACATTTGACCGAAGCGCCATCTTTACTGG 1076
BSNT_00531___ 1077 CATTCACATTTTAGCGAATGCCGTATTAAAAACTTTT----CAAAAGGCT 1122
|.||.|.||.|||.||..||||||..|.|||.|.||| ||.||
RBAM_003250__ 1077 CGTTGAGATATTAACGGCTGCCGTCCTCAAATCGTTTGAAGCATAA---- 1122
BSNT_00531___ 1123 GATTCACCCGCTGCCGCTTACGTAAAATAA 1152
RBAM_003250__ 1122 ------------------------------ 1122
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