Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00530 and RBAM_003240
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:16
# Commandline: needle
# -asequence dna-align/BSNT_00530___opuAC.1.9828.seq
# -bsequence dna-align/RBAM_003240___opuAC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00530___opuAC-RBAM_003240___opuAC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00530___opuAC-RBAM_003240___opuAC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00530___opuAC
# 2: RBAM_003240___opuAC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 890
# Identity: 688/890 (77.3%)
# Similarity: 688/890 (77.3%)
# Gaps: 16/890 ( 1.8%)
# Score: 2612.0
#
#
#=======================================
BSNT_00530___ 1 ATGCTTAAAAAAATCATCGGCATCGGCGTTTCCGCCATGCTGGCGCTCTC 50
||||||||.|||||||||||..||||||||.||||...||||||.||.||
RBAM_003240__ 1 ATGCTTAAGAAAATCATCGGTGTCGGCGTTACCGCTGCGCTGGCTCTTTC 50
BSNT_00530___ 51 ACTTGCGGCTTGCGGTTCAGAAAAC-GAAAAAAATGCATCCGCAGCAGAA 99
..|.||.||.|||||||| |.|.|| ||....||.|||.|.||.||.||.
RBAM_003240__ 51 TTTGGCTGCCTGCGGTTC-GCAGACTGATGGTAAGGCAACGGCTGCGGAC 99
BSNT_00530___ 100 CAGGTGAATAAGACCATCATCGGGATTGACCCCGGTTCAGGGATTATGTC 149
||||||||.||.|||||.|||||.|||||.||.||.||.|||||.|||.|
RBAM_003240__ 100 CAGGTGAACAAAACCATTATCGGTATTGATCCGGGATCGGGGATCATGGC 149
BSNT_00530___ 150 CCTGACTGACAAAGCGATGAAGGATTATGACCTGAATGACTGGACATTGA 199
||||||.||..|.||..||||||||||.|...||||.||||||| |
RBAM_003240__ 150 CCTGACGGATGAGGCCGTGAAGGATTACGGGTTGAAAGACTGGA-----A 194
BSNT_00530___ 200 TTT-----CTGCGTCAAGTGCTGCGATGACCGCTACGCTTAAAAAGTCAT 244
|.| |.||||||||||||||.|||||.||.||..|.||.||.||||
RBAM_003240__ 195 TGTCGTCACGGCGTCAAGTGCTGCCATGACGGCGACATTGAAGAAATCAT 244
BSNT_00530___ 245 ACGACCGTAAGAAACCGATTATCATTACAGGATGGACACCGCACTGGATG 294
|.|||||.||.||.|||||.|||.|.||.||.|||||.||||||||||||
RBAM_003240__ 245 ATGACCGGAAAAAGCCGATCATCGTAACGGGCTGGACGCCGCACTGGATG 294
BSNT_00530___ 295 TTCTCTAGATATAAGCTGAAATATCTCGATGATCCGAAACAATCTTATGG 344
|||||.|||||.||||||||.|..||.||||||||||||.||.|.||.||
RBAM_003240__ 295 TTCTCCAGATACAAGCTGAAGTTCCTTGATGATCCGAAAAAAACGTACGG 344
BSNT_00530___ 345 CAGCGCAGAGGAAATCCATACGATCACACGCAAAGGCTTCAGCAAAGAAC 394
.|..||.|||.|.||.||||||||.||..|.|..||||||||.||.||||
RBAM_003240__ 345 AACTGCCGAGCAGATTCATACGATTACTAGAACCGGCTTCAGTAAGGAAC 394
BSNT_00530___ 395 AGCCGAATGCCG-CAAAGCTTCTGAGCCAGTTTAAATGGACGCAAGACGA 443
||||.||.||.| ||||| ||||.||||||||.|||||||||||.|||||
RBAM_003240__ 395 AGCCTAACGCGGCCAAAG-TTCTCAGCCAGTTCAAATGGACGCAGGACGA 443
BSNT_00530___ 444 AATGGGCGAAATCATGATCAAGGTGGAGGAAGGCGAGAAACCTGCCAAAG 493
.|||||.|||.|||||||....||.|||||||||||.||.||.|||||||
RBAM_003240__ 444 TATGGGAGAAGTCATGATTGCCGTTGAGGAAGGCGAAAAGCCGGCCAAAG 493
BSNT_00530___ 494 TTGCTGCCGAGTACGTCAATAAACACAAGGATCAGATTGCCGAATGGACA 543
..||.||.||.||.||.||.||||||||.||.||..|.||..||||||||
RBAM_003240__ 494 CCGCAGCTGAATATGTGAAAAAACACAAAGACCAAGTGGCTCAATGGACA 543
BSNT_00530___ 544 AAAGGCGTTCA-AAAGGTAAAGGGAGACAAAATCAACCTTGCCTATGTGG 592
|||||||..|| ||||..|||||| ||.|||||.|||||.||.|||||||
RBAM_003240__ 544 AAAGGCGCCCATAAAGTCAAAGGG-GATAAAATTAACCTGGCTTATGTGG 592
BSNT_00530___ 593 CGTGGGACAGTGAGATTGCAAGTACAAACGTCATAGGCAAAGTCTTAGAA 642
|.|||||||||||.||.||||||||.||.||.||.||.|||||.||..||
RBAM_003240__ 593 CATGGGACAGTGAAATCGCAAGTACGAATGTAATCGGAAAAGTATTTCAA 642
BSNT_00530___ 643 GACTTGGGCTATGAGGTAACACTTACTCAGGTAGAGGCTGGGCCGATGTG 692
|||.|.||||||||.||.|..||.||.||.||.|||||.||.||||||||
RBAM_003240__ 643 GACCTCGGCTATGACGTGAAGCTGACGCAAGTGGAGGCGGGACCGATGTG 692
BSNT_00530___ 693 GACTGCAATTGCGACGGGAAGTGCGGATGCATCCCTTTCCGCATGGCTGC 742
||||||.||||||||.||.||.||||||||.||..|.||.||.|||||.|
RBAM_003240__ 693 GACTGCGATTGCGACAGGCAGCGCGGATGCGTCATTGTCTGCTTGGCTTC 742
BSNT_00530___ 743 CGAATACCCATAAAGCATACGCCGCTAAATATAAAGGCAAATATGATGAT 792
|||||||||||||.|||||.||..||||||||||||||||||||||.|||
RBAM_003240__ 743 CGAATACCCATAAGGCATATGCGTCTAAATATAAAGGCAAATATGAAGAT 792
BSNT_00530___ 793 ATTGGCACAAGTATGACGGGTGTGAAGATGGGGCTTGTTGTTCCTCAATA 842
.|.||.||.|||.||||.||.||.||||||||.||.||.||||||||.||
RBAM_003240__ 793 GTAGGAACGAGTCTGACAGGCGTCAAGATGGGTCTGGTCGTTCCTCAGTA 842
BSNT_00530___ 843 TATGAAAAATGTCAACTCAATTGAAGATTTGAAGAAGTAA 882
|||||||||.|||||.||||||||||||||||||||.|||
RBAM_003240__ 843 TATGAAAAACGTCAATTCAATTGAAGATTTGAAGAAATAA 882
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